Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04115

Experiment: 30_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04110 and AMB_RS04115 are separated by 190 nucleotidesAMB_RS04115 and AMB_RS04120 are separated by 5 nucleotidesAMB_RS04120 and AMB_RS04125 overlap by 4 nucleotides AMB_RS04110: AMB_RS04110 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 861,447 to 862,310 _RS04110 AMB_RS04115: AMB_RS04115 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase, at 862,501 to 863,958 _RS04115 AMB_RS04120: AMB_RS04120 - 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, at 863,964 to 864,728 _RS04120 AMB_RS04125: AMB_RS04125 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase, at 864,725 to 865,501 _RS04125 Position (kb) 862 863 864Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 861.502 kb on + strandat 861.502 kb on + strandat 861.532 kb on + strandat 861.532 kb on + strandat 861.532 kb on + strandat 861.533 kb on - strandat 861.533 kb on - strandat 861.533 kb on - strandat 861.533 kb on - strandat 861.533 kb on - strandat 861.607 kb on + strand, within AMB_RS04110at 861.607 kb on + strand, within AMB_RS04110at 861.685 kb on + strand, within AMB_RS04110at 861.685 kb on + strand, within AMB_RS04110at 861.685 kb on + strand, within AMB_RS04110at 861.685 kb on + strand, within AMB_RS04110at 861.686 kb on - strand, within AMB_RS04110at 861.686 kb on - strand, within AMB_RS04110at 861.686 kb on - strand, within AMB_RS04110at 861.686 kb on - strand, within AMB_RS04110at 861.892 kb on + strand, within AMB_RS04110at 861.893 kb on - strand, within AMB_RS04110at 861.934 kb on + strand, within AMB_RS04110at 861.935 kb on - strand, within AMB_RS04110at 862.042 kb on + strand, within AMB_RS04110at 862.042 kb on + strand, within AMB_RS04110at 862.042 kb on + strand, within AMB_RS04110at 862.043 kb on - strand, within AMB_RS04110at 862.043 kb on - strand, within AMB_RS04110at 862.121 kb on - strand, within AMB_RS04110at 862.121 kb on - strand, within AMB_RS04110at 862.261 kb on + strandat 862.261 kb on + strandat 862.261 kb on + strandat 862.261 kb on + strandat 862.262 kb on - strandat 862.262 kb on - strandat 862.262 kb on - strandat 862.262 kb on - strandat 862.305 kb on - strandat 862.574 kb on + strandat 862.574 kb on + strandat 862.574 kb on + strandat 862.575 kb on - strandat 862.575 kb on - strandat 862.575 kb on - strandat 862.580 kb on + strandat 862.730 kb on + strand, within AMB_RS04115at 862.730 kb on + strand, within AMB_RS04115at 862.731 kb on - strand, within AMB_RS04115at 862.731 kb on - strand, within AMB_RS04115at 862.746 kb on - strand, within AMB_RS04115at 862.746 kb on - strand, within AMB_RS04115at 862.971 kb on + strand, within AMB_RS04115at 862.973 kb on + strand, within AMB_RS04115at 862.973 kb on + strand, within AMB_RS04115at 862.973 kb on + strand, within AMB_RS04115at 862.973 kb on + strand, within AMB_RS04115at 862.973 kb on + strand, within AMB_RS04115at 862.973 kb on + strand, within AMB_RS04115at 862.974 kb on - strand, within AMB_RS04115at 862.974 kb on - strand, within AMB_RS04115at 862.974 kb on - strand, within AMB_RS04115at 862.974 kb on - strand, within AMB_RS04115at 862.974 kb on - strand, within AMB_RS04115at 862.974 kb on - strand, within AMB_RS04115at 863.096 kb on + strand, within AMB_RS04115at 863.096 kb on + strand, within AMB_RS04115at 863.097 kb on - strand, within AMB_RS04115at 863.097 kb on - strand, within AMB_RS04115at 863.097 kb on - strand, within AMB_RS04115at 863.246 kb on + strand, within AMB_RS04115at 863.247 kb on - strand, within AMB_RS04115at 863.247 kb on - strand, within AMB_RS04115at 863.247 kb on - strand, within AMB_RS04115at 863.247 kb on - strand, within AMB_RS04115at 863.247 kb on - strand, within AMB_RS04115at 863.247 kb on - strand, within AMB_RS04115at 863.247 kb on - strand, within AMB_RS04115at 863.469 kb on + strand, within AMB_RS04115at 863.564 kb on + strand, within AMB_RS04115at 863.564 kb on + strand, within AMB_RS04115at 863.573 kb on + strand, within AMB_RS04115at 863.573 kb on + strand, within AMB_RS04115at 863.573 kb on + strand, within AMB_RS04115at 863.573 kb on + strand, within AMB_RS04115at 863.573 kb on + strand, within AMB_RS04115at 863.574 kb on - strand, within AMB_RS04115at 863.574 kb on - strand, within AMB_RS04115at 863.597 kb on + strand, within AMB_RS04115at 863.597 kb on + strand, within AMB_RS04115at 863.598 kb on - strand, within AMB_RS04115at 863.639 kb on + strand, within AMB_RS04115at 863.640 kb on - strand, within AMB_RS04115at 863.980 kb on + strandat 863.980 kb on + strandat 863.981 kb on - strandat 863.981 kb on - strandat 864.130 kb on + strand, within AMB_RS04120at 864.130 kb on + strand, within AMB_RS04120at 864.130 kb on + strand, within AMB_RS04120at 864.130 kb on + strand, within AMB_RS04120at 864.130 kb on + strand, within AMB_RS04120at 864.130 kb on + strand, within AMB_RS04120at 864.131 kb on + strand, within AMB_RS04120at 864.131 kb on - strand, within AMB_RS04120at 864.131 kb on - strand, within AMB_RS04120at 864.234 kb on + strand, within AMB_RS04120at 864.235 kb on - strand, within AMB_RS04120at 864.310 kb on + strand, within AMB_RS04120at 864.313 kb on + strand, within AMB_RS04120at 864.313 kb on + strand, within AMB_RS04120at 864.313 kb on + strand, within AMB_RS04120at 864.314 kb on - strand, within AMB_RS04120at 864.314 kb on - strand, within AMB_RS04120at 864.314 kb on - strand, within AMB_RS04120at 864.314 kb on - strand, within AMB_RS04120at 864.341 kb on - strand, within AMB_RS04120at 864.341 kb on - strand, within AMB_RS04120at 864.358 kb on + strand, within AMB_RS04120at 864.358 kb on + strand, within AMB_RS04120at 864.358 kb on + strand, within AMB_RS04120at 864.359 kb on - strand, within AMB_RS04120at 864.359 kb on - strand, within AMB_RS04120at 864.376 kb on + strand, within AMB_RS04120at 864.376 kb on + strand, within AMB_RS04120at 864.376 kb on + strand, within AMB_RS04120at 864.376 kb on + strand, within AMB_RS04120at 864.376 kb on + strand, within AMB_RS04120at 864.377 kb on - strand, within AMB_RS04120at 864.440 kb on - strand, within AMB_RS04120at 864.440 kb on - strand, within AMB_RS04120at 864.440 kb on - strand, within AMB_RS04120at 864.568 kb on + strand, within AMB_RS04120at 864.568 kb on + strand, within AMB_RS04120at 864.568 kb on + strand, within AMB_RS04120at 864.569 kb on - strand, within AMB_RS04120at 864.569 kb on - strand, within AMB_RS04120at 864.569 kb on - strand, within AMB_RS04120at 864.569 kb on - strand, within AMB_RS04120at 864.705 kb on - strandat 864.706 kb on + strandat 864.707 kb on - strandat 864.906 kb on + strand, within AMB_RS04125at 864.907 kb on - strand, within AMB_RS04125at 864.951 kb on + strand, within AMB_RS04125at 864.951 kb on + strand, within AMB_RS04125at 864.951 kb on + strand, within AMB_RS04125at 864.951 kb on + strand, within AMB_RS04125at 864.951 kb on + strand, within AMB_RS04125at 864.952 kb on - strand, within AMB_RS04125at 864.952 kb on - strand, within AMB_RS04125at 864.952 kb on - strand, within AMB_RS04125at 864.952 kb on - strand, within AMB_RS04125at 864.952 kb on - strand, within AMB_RS04125

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_2
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861,502 + -0.6
861,502 + -0.0
861,532 + -0.2
861,532 + +0.9
861,532 + -0.2
861,533 - +0.6
861,533 - -0.1
861,533 - -2.0
861,533 - +0.6
861,533 - +0.6
861,607 + AMB_RS04110 0.19 +0.3
861,607 + AMB_RS04110 0.19 -2.0
861,685 + AMB_RS04110 0.28 +1.6
861,685 + AMB_RS04110 0.28 -1.4
861,685 + AMB_RS04110 0.28 -0.7
861,685 + AMB_RS04110 0.28 -2.0
861,686 - AMB_RS04110 0.28 -0.4
861,686 - AMB_RS04110 0.28 +1.0
861,686 - AMB_RS04110 0.28 -0.4
861,686 - AMB_RS04110 0.28 +0.2
861,892 + AMB_RS04110 0.52 -4.0
861,893 - AMB_RS04110 0.52 -0.8
861,934 + AMB_RS04110 0.56 +0.4
861,935 - AMB_RS04110 0.56 -1.8
862,042 + AMB_RS04110 0.69 +0.3
862,042 + AMB_RS04110 0.69 -0.0
862,042 + AMB_RS04110 0.69 -1.1
862,043 - AMB_RS04110 0.69 -0.3
862,043 - AMB_RS04110 0.69 -0.9
862,121 - AMB_RS04110 0.78 -1.8
862,121 - AMB_RS04110 0.78 -0.0
862,261 + -2.1
862,261 + -0.0
862,261 + -0.8
862,261 + +1.6
862,262 - -0.0
862,262 - -0.6
862,262 - -1.8
862,262 - -0.5
862,305 - +0.3
862,574 + +0.5
862,574 + -0.7
862,574 + +0.3
862,575 - +0.5
862,575 - -1.8
862,575 - +0.6
862,580 + -2.3
862,730 + AMB_RS04115 0.16 +0.4
862,730 + AMB_RS04115 0.16 -0.9
862,731 - AMB_RS04115 0.16 -0.7
862,731 - AMB_RS04115 0.16 -1.3
862,746 - AMB_RS04115 0.17 -2.8
862,746 - AMB_RS04115 0.17 +0.2
862,971 + AMB_RS04115 0.32 -0.1
862,973 + AMB_RS04115 0.32 -1.5
862,973 + AMB_RS04115 0.32 -0.7
862,973 + AMB_RS04115 0.32 -1.0
862,973 + AMB_RS04115 0.32 -0.6
862,973 + AMB_RS04115 0.32 +0.4
862,973 + AMB_RS04115 0.32 -0.0
862,974 - AMB_RS04115 0.32 +0.4
862,974 - AMB_RS04115 0.32 -0.2
862,974 - AMB_RS04115 0.32 -0.0
862,974 - AMB_RS04115 0.32 +0.7
862,974 - AMB_RS04115 0.32 -0.2
862,974 - AMB_RS04115 0.32 -1.2
863,096 + AMB_RS04115 0.41 +0.1
863,096 + AMB_RS04115 0.41 -1.5
863,097 - AMB_RS04115 0.41 -0.3
863,097 - AMB_RS04115 0.41 +1.2
863,097 - AMB_RS04115 0.41 -2.7
863,246 + AMB_RS04115 0.51 -0.0
863,247 - AMB_RS04115 0.51 -0.3
863,247 - AMB_RS04115 0.51 -0.8
863,247 - AMB_RS04115 0.51 -0.0
863,247 - AMB_RS04115 0.51 -0.9
863,247 - AMB_RS04115 0.51 +1.5
863,247 - AMB_RS04115 0.51 -0.8
863,247 - AMB_RS04115 0.51 +1.5
863,469 + AMB_RS04115 0.66 -0.5
863,564 + AMB_RS04115 0.73 +0.1
863,564 + AMB_RS04115 0.73 +0.4
863,573 + AMB_RS04115 0.74 -2.0
863,573 + AMB_RS04115 0.74 +4.2
863,573 + AMB_RS04115 0.74 -1.3
863,573 + AMB_RS04115 0.74 -0.3
863,573 + AMB_RS04115 0.74 -0.9
863,574 - AMB_RS04115 0.74 +0.5
863,574 - AMB_RS04115 0.74 -0.1
863,597 + AMB_RS04115 0.75 -0.0
863,597 + AMB_RS04115 0.75 +0.7
863,598 - AMB_RS04115 0.75 -0.1
863,639 + AMB_RS04115 0.78 +0.3
863,640 - AMB_RS04115 0.78 -2.0
863,980 + -0.5
863,980 + -0.2
863,981 - -0.0
863,981 - +1.2
864,130 + AMB_RS04120 0.22 -0.3
864,130 + AMB_RS04120 0.22 +0.3
864,130 + AMB_RS04120 0.22 +0.9
864,130 + AMB_RS04120 0.22 -1.5
864,130 + AMB_RS04120 0.22 +0.3
864,130 + AMB_RS04120 0.22 +1.0
864,131 + AMB_RS04120 0.22 -3.7
864,131 - AMB_RS04120 0.22 -1.5
864,131 - AMB_RS04120 0.22 -0.0
864,234 + AMB_RS04120 0.35 +0.0
864,235 - AMB_RS04120 0.35 +0.5
864,310 + AMB_RS04120 0.45 -0.9
864,313 + AMB_RS04120 0.46 +0.0
864,313 + AMB_RS04120 0.46 -0.5
864,313 + AMB_RS04120 0.46 -0.0
864,314 - AMB_RS04120 0.46 +0.8
864,314 - AMB_RS04120 0.46 -3.2
864,314 - AMB_RS04120 0.46 -1.3
864,314 - AMB_RS04120 0.46 -0.3
864,341 - AMB_RS04120 0.49 -0.3
864,341 - AMB_RS04120 0.49 -0.0
864,358 + AMB_RS04120 0.52 +0.5
864,358 + AMB_RS04120 0.52 +3.1
864,358 + AMB_RS04120 0.52 -0.3
864,359 - AMB_RS04120 0.52 +1.5
864,359 - AMB_RS04120 0.52 -2.4
864,376 + AMB_RS04120 0.54 -0.6
864,376 + AMB_RS04120 0.54 -0.9
864,376 + AMB_RS04120 0.54 -1.3
864,376 + AMB_RS04120 0.54 +1.2
864,376 + AMB_RS04120 0.54 -0.4
864,377 - AMB_RS04120 0.54 -0.2
864,440 - AMB_RS04120 0.62 +0.4
864,440 - AMB_RS04120 0.62 +0.1
864,440 - AMB_RS04120 0.62 -1.3
864,568 + AMB_RS04120 0.79 +3.6
864,568 + AMB_RS04120 0.79 -0.8
864,568 + AMB_RS04120 0.79 -0.6
864,569 - AMB_RS04120 0.79 -0.6
864,569 - AMB_RS04120 0.79 +0.2
864,569 - AMB_RS04120 0.79 -0.2
864,569 - AMB_RS04120 0.79 -0.4
864,705 - -1.7
864,706 + -1.0
864,707 - -0.3
864,906 + AMB_RS04125 0.23 -0.8
864,907 - AMB_RS04125 0.23 -1.8
864,951 + AMB_RS04125 0.29 -1.9
864,951 + AMB_RS04125 0.29 -0.4
864,951 + AMB_RS04125 0.29 -1.0
864,951 + AMB_RS04125 0.29 +0.2
864,951 + AMB_RS04125 0.29 -0.5
864,952 - AMB_RS04125 0.29 -2.0
864,952 - AMB_RS04125 0.29 -0.1
864,952 - AMB_RS04125 0.29 -0.8
864,952 - AMB_RS04125 0.29 -0.2
864,952 - AMB_RS04125 0.29 -0.3

Or see this region's nucleotide sequence