Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04040

Experiment: 30_an_nonmag_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS04025 and AMB_RS04030 are separated by 2 nucleotidesAMB_RS04030 and AMB_RS04035 overlap by 4 nucleotidesAMB_RS04035 and AMB_RS04040 are separated by 1 nucleotidesAMB_RS04040 and AMB_RS04045 are separated by 99 nucleotides AMB_RS04025: AMB_RS04025 - glutathione S-transferase, at 843,544 to 844,149 _RS04025 AMB_RS04030: AMB_RS04030 - cupin, at 844,152 to 844,577 _RS04030 AMB_RS04035: AMB_RS04035 - hypothetical protein, at 844,574 to 845,050 _RS04035 AMB_RS04040: AMB_RS04040 - phosphatase, at 845,052 to 845,717 _RS04040 AMB_RS04045: AMB_RS04045 - B12-binding domain-containing radical SAM protein, at 845,817 to 847,313 _RS04045 Position (kb) 845 846Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 844.275 kb on + strand, within AMB_RS04030at 844.275 kb on + strand, within AMB_RS04030at 844.275 kb on + strand, within AMB_RS04030at 844.275 kb on + strand, within AMB_RS04030at 844.275 kb on + strand, within AMB_RS04030at 844.275 kb on + strand, within AMB_RS04030at 844.275 kb on + strand, within AMB_RS04030at 844.276 kb on - strand, within AMB_RS04030at 844.276 kb on - strand, within AMB_RS04030at 844.276 kb on - strand, within AMB_RS04030at 844.276 kb on - strand, within AMB_RS04030at 844.276 kb on - strand, within AMB_RS04030at 844.276 kb on - strand, within AMB_RS04030at 844.276 kb on - strand, within AMB_RS04030at 844.278 kb on + strand, within AMB_RS04030at 844.278 kb on + strand, within AMB_RS04030at 844.279 kb on - strand, within AMB_RS04030at 844.333 kb on + strand, within AMB_RS04030at 844.333 kb on + strand, within AMB_RS04030at 844.333 kb on + strand, within AMB_RS04030at 844.333 kb on + strand, within AMB_RS04030at 844.341 kb on + strand, within AMB_RS04030at 844.341 kb on + strand, within AMB_RS04030at 844.342 kb on - strand, within AMB_RS04030at 844.342 kb on - strand, within AMB_RS04030at 844.342 kb on - strand, within AMB_RS04030at 844.342 kb on - strand, within AMB_RS04030at 844.979 kb on + strand, within AMB_RS04035at 844.979 kb on + strand, within AMB_RS04035at 844.979 kb on + strand, within AMB_RS04035at 844.980 kb on - strand, within AMB_RS04035at 845.124 kb on + strand, within AMB_RS04040at 845.125 kb on - strand, within AMB_RS04040at 845.292 kb on + strand, within AMB_RS04040at 845.293 kb on - strand, within AMB_RS04040at 845.293 kb on - strand, within AMB_RS04040at 845.293 kb on - strand, within AMB_RS04040at 845.293 kb on - strand, within AMB_RS04040at 845.502 kb on + strand, within AMB_RS04040at 845.625 kb on + strand, within AMB_RS04040at 845.626 kb on - strand, within AMB_RS04040at 845.626 kb on - strand, within AMB_RS04040at 845.626 kb on - strand, within AMB_RS04040at 845.626 kb on - strand, within AMB_RS04040at 845.627 kb on + strand, within AMB_RS04040at 845.627 kb on + strand, within AMB_RS04040at 845.627 kb on + strand, within AMB_RS04040at 845.627 kb on + strand, within AMB_RS04040at 845.627 kb on + strand, within AMB_RS04040at 845.628 kb on - strand, within AMB_RS04040at 845.628 kb on - strand, within AMB_RS04040at 845.772 kb on - strandat 845.833 kb on + strandat 845.834 kb on - strandat 845.834 kb on - strandat 845.834 kb on - strandat 845.834 kb on - strandat 845.868 kb on + strandat 845.868 kb on + strandat 845.868 kb on + strandat 845.869 kb on - strandat 846.054 kb on + strand, within AMB_RS04045at 846.213 kb on + strand, within AMB_RS04045at 846.213 kb on + strand, within AMB_RS04045at 846.213 kb on + strand, within AMB_RS04045at 846.213 kb on + strand, within AMB_RS04045at 846.213 kb on + strand, within AMB_RS04045at 846.213 kb on + strand, within AMB_RS04045at 846.213 kb on + strand, within AMB_RS04045at 846.214 kb on - strand, within AMB_RS04045at 846.214 kb on - strand, within AMB_RS04045at 846.214 kb on - strand, within AMB_RS04045at 846.214 kb on - strand, within AMB_RS04045at 846.214 kb on - strand, within AMB_RS04045at 846.214 kb on - strand, within AMB_RS04045at 846.214 kb on - strand, within AMB_RS04045at 846.214 kb on - strand, within AMB_RS04045at 846.237 kb on + strand, within AMB_RS04045at 846.237 kb on + strand, within AMB_RS04045at 846.237 kb on + strand, within AMB_RS04045at 846.238 kb on - strand, within AMB_RS04045at 846.335 kb on + strand, within AMB_RS04045at 846.465 kb on + strand, within AMB_RS04045at 846.466 kb on - strand, within AMB_RS04045at 846.466 kb on - strand, within AMB_RS04045at 846.466 kb on - strand, within AMB_RS04045at 846.466 kb on - strand, within AMB_RS04045at 846.603 kb on + strand, within AMB_RS04045at 846.604 kb on - strand, within AMB_RS04045at 846.668 kb on + strand, within AMB_RS04045at 846.668 kb on + strand, within AMB_RS04045at 846.669 kb on - strand, within AMB_RS04045

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_2
remove
844,275 + AMB_RS04030 0.29 -0.0
844,275 + AMB_RS04030 0.29 -1.4
844,275 + AMB_RS04030 0.29 +0.3
844,275 + AMB_RS04030 0.29 -0.1
844,275 + AMB_RS04030 0.29 +0.8
844,275 + AMB_RS04030 0.29 -0.1
844,275 + AMB_RS04030 0.29 +0.6
844,276 - AMB_RS04030 0.29 -4.4
844,276 - AMB_RS04030 0.29 +0.1
844,276 - AMB_RS04030 0.29 -0.1
844,276 - AMB_RS04030 0.29 -0.6
844,276 - AMB_RS04030 0.29 +1.6
844,276 - AMB_RS04030 0.29 +0.0
844,276 - AMB_RS04030 0.29 -0.7
844,278 + AMB_RS04030 0.30 +0.2
844,278 + AMB_RS04030 0.30 -1.6
844,279 - AMB_RS04030 0.30 +0.1
844,333 + AMB_RS04030 0.42 -0.3
844,333 + AMB_RS04030 0.42 -0.4
844,333 + AMB_RS04030 0.42 +0.3
844,333 + AMB_RS04030 0.42 +0.7
844,341 + AMB_RS04030 0.44 -0.4
844,341 + AMB_RS04030 0.44 +0.2
844,342 - AMB_RS04030 0.45 -0.4
844,342 - AMB_RS04030 0.45 -1.1
844,342 - AMB_RS04030 0.45 -1.9
844,342 - AMB_RS04030 0.45 -1.6
844,979 + AMB_RS04035 0.85 -0.8
844,979 + AMB_RS04035 0.85 +0.2
844,979 + AMB_RS04035 0.85 -0.3
844,980 - AMB_RS04035 0.85 -1.1
845,124 + AMB_RS04040 0.11 -2.2
845,125 - AMB_RS04040 0.11 -0.0
845,292 + AMB_RS04040 0.36 +0.6
845,293 - AMB_RS04040 0.36 +1.6
845,293 - AMB_RS04040 0.36 -0.4
845,293 - AMB_RS04040 0.36 -0.4
845,293 - AMB_RS04040 0.36 -0.8
845,502 + AMB_RS04040 0.68 -1.4
845,625 + AMB_RS04040 0.86 -1.6
845,626 - AMB_RS04040 0.86 -0.7
845,626 - AMB_RS04040 0.86 -2.3
845,626 - AMB_RS04040 0.86 -0.8
845,626 - AMB_RS04040 0.86 -1.4
845,627 + AMB_RS04040 0.86 -2.1
845,627 + AMB_RS04040 0.86 -2.0
845,627 + AMB_RS04040 0.86 +0.2
845,627 + AMB_RS04040 0.86 -0.6
845,627 + AMB_RS04040 0.86 -0.1
845,628 - AMB_RS04040 0.86 -0.4
845,628 - AMB_RS04040 0.86 -2.0
845,772 - -1.4
845,833 + -1.6
845,834 - +0.5
845,834 - -0.8
845,834 - -0.9
845,834 - +1.6
845,868 + +3.9
845,868 + -0.5
845,868 + -1.5
845,869 - -0.2
846,054 + AMB_RS04045 0.16 +1.0
846,213 + AMB_RS04045 0.26 +0.6
846,213 + AMB_RS04045 0.26 -1.0
846,213 + AMB_RS04045 0.26 -0.4
846,213 + AMB_RS04045 0.26 -0.2
846,213 + AMB_RS04045 0.26 -2.0
846,213 + AMB_RS04045 0.26 -1.0
846,213 + AMB_RS04045 0.26 -0.8
846,214 - AMB_RS04045 0.27 -0.8
846,214 - AMB_RS04045 0.27 -3.1
846,214 - AMB_RS04045 0.27 +1.1
846,214 - AMB_RS04045 0.27 +0.0
846,214 - AMB_RS04045 0.27 -1.4
846,214 - AMB_RS04045 0.27 +0.6
846,214 - AMB_RS04045 0.27 -0.2
846,214 - AMB_RS04045 0.27 -0.5
846,237 + AMB_RS04045 0.28 -0.4
846,237 + AMB_RS04045 0.28 -1.3
846,237 + AMB_RS04045 0.28 +0.6
846,238 - AMB_RS04045 0.28 -0.5
846,335 + AMB_RS04045 0.35 -1.6
846,465 + AMB_RS04045 0.43 +0.3
846,466 - AMB_RS04045 0.43 -0.8
846,466 - AMB_RS04045 0.43 -3.1
846,466 - AMB_RS04045 0.43 -1.4
846,466 - AMB_RS04045 0.43 -0.8
846,603 + AMB_RS04045 0.53 -1.4
846,604 - AMB_RS04045 0.53 -3.3
846,668 + AMB_RS04045 0.57 -2.0
846,668 + AMB_RS04045 0.57 -0.8
846,669 - AMB_RS04045 0.57 +0.3

Or see this region's nucleotide sequence