Experiment: 30_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03625 and AMB_RS03630 are separated by 108 nucleotides AMB_RS03630 and AMB_RS03635 are separated by 147 nucleotides
AMB_RS03625: AMB_RS03625 - hypothetical protein, at 762,614 to 763,990
_RS03625
AMB_RS03630: AMB_RS03630 - hypothetical protein, at 764,099 to 765,715
_RS03630
AMB_RS03635: AMB_RS03635 - tetratricopeptide repeat protein, at 765,863 to 768,139
_RS03635
Position (kb) 764
765
766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 763.409 kb on + strand, within AMB_RS03625 at 763.409 kb on + strand, within AMB_RS03625 at 763.409 kb on + strand, within AMB_RS03625 at 763.409 kb on + strand, within AMB_RS03625 at 763.410 kb on - strand, within AMB_RS03625 at 763.410 kb on - strand, within AMB_RS03625 at 763.410 kb on - strand, within AMB_RS03625 at 763.978 kb on + strand at 763.979 kb on - strand at 764.013 kb on + strand at 764.014 kb on - strand at 764.014 kb on - strand at 764.036 kb on + strand at 764.036 kb on + strand at 764.036 kb on + strand at 764.037 kb on - strand at 764.037 kb on - strand at 764.362 kb on - strand, within AMB_RS03630 at 764.362 kb on - strand, within AMB_RS03630 at 764.508 kb on - strand, within AMB_RS03630 at 764.575 kb on - strand, within AMB_RS03630 at 764.638 kb on - strand, within AMB_RS03630 at 764.638 kb on - strand, within AMB_RS03630 at 764.638 kb on - strand, within AMB_RS03630 at 765.020 kb on + strand, within AMB_RS03630 at 765.030 kb on + strand, within AMB_RS03630 at 765.031 kb on - strand, within AMB_RS03630 at 765.311 kb on - strand, within AMB_RS03630 at 765.311 kb on - strand, within AMB_RS03630 at 765.311 kb on - strand, within AMB_RS03630 at 765.395 kb on + strand, within AMB_RS03630 at 765.417 kb on + strand, within AMB_RS03630 at 765.589 kb on + strand at 765.698 kb on + strand at 765.698 kb on + strand at 765.741 kb on - strand at 765.772 kb on + strand at 765.773 kb on - strand at 765.807 kb on + strand at 765.807 kb on + strand at 765.808 kb on - strand at 765.808 kb on - strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.831 kb on + strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.832 kb on - strand at 765.848 kb on - strand at 765.870 kb on + strand at 765.870 kb on + strand at 765.870 kb on + strand at 765.870 kb on + strand at 765.870 kb on + strand at 765.870 kb on + strand at 765.871 kb on - strand at 765.871 kb on - strand at 765.871 kb on - strand at 765.871 kb on - strand at 765.871 kb on - strand at 765.871 kb on - strand at 765.948 kb on + strand at 765.948 kb on + strand at 765.948 kb on + strand at 765.948 kb on + strand at 765.948 kb on + strand at 765.949 kb on - strand at 766.019 kb on + strand at 766.019 kb on + strand at 766.019 kb on + strand at 766.020 kb on - strand at 766.020 kb on - strand at 766.020 kb on - strand at 766.020 kb on - strand at 766.020 kb on - strand at 766.020 kb on - strand at 766.046 kb on + strand at 766.160 kb on + strand, within AMB_RS03635 at 766.160 kb on + strand, within AMB_RS03635 at 766.161 kb on - strand, within AMB_RS03635 at 766.161 kb on - strand, within AMB_RS03635 at 766.282 kb on + strand, within AMB_RS03635 at 766.282 kb on + strand, within AMB_RS03635 at 766.282 kb on + strand, within AMB_RS03635 at 766.386 kb on + strand, within AMB_RS03635 at 766.387 kb on - strand, within AMB_RS03635 at 766.387 kb on - strand, within AMB_RS03635
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_2 remove 763,409 + AMB_RS03625 0.58 +1.6 763,409 + AMB_RS03625 0.58 -0.4 763,409 + AMB_RS03625 0.58 -0.2 763,409 + AMB_RS03625 0.58 +3.2 763,410 - AMB_RS03625 0.58 -0.9 763,410 - AMB_RS03625 0.58 +0.4 763,410 - AMB_RS03625 0.58 -2.0 763,978 + -2.1 763,979 - -2.8 764,013 + +4.7 764,014 - -1.2 764,014 - +0.6 764,036 + +0.4 764,036 + +0.1 764,036 + -0.2 764,037 - -1.2 764,037 - -0.9 764,362 - AMB_RS03630 0.16 -0.5 764,362 - AMB_RS03630 0.16 +0.6 764,508 - AMB_RS03630 0.25 -0.1 764,575 - AMB_RS03630 0.29 -0.0 764,638 - AMB_RS03630 0.33 -1.0 764,638 - AMB_RS03630 0.33 -1.2 764,638 - AMB_RS03630 0.33 +0.0 765,020 + AMB_RS03630 0.57 -0.1 765,030 + AMB_RS03630 0.58 -1.6 765,031 - AMB_RS03630 0.58 -0.4 765,311 - AMB_RS03630 0.75 +0.6 765,311 - AMB_RS03630 0.75 -0.2 765,311 - AMB_RS03630 0.75 -0.9 765,395 + AMB_RS03630 0.80 -1.6 765,417 + AMB_RS03630 0.82 +0.8 765,589 + -1.7 765,698 + -1.7 765,698 + -1.2 765,741 - -2.8 765,772 + -2.6 765,773 - -1.0 765,807 + +0.3 765,807 + -0.7 765,808 - +0.8 765,808 - +0.2 765,831 + -0.1 765,831 + +0.6 765,831 + -0.4 765,831 + +0.6 765,831 + -1.2 765,831 + -0.0 765,831 + -1.0 765,831 + -3.1 765,831 + +0.6 765,831 + -0.3 765,831 + +0.0 765,831 + -2.1 765,831 + -0.1 765,831 + +0.2 765,831 + -0.3 765,832 - -2.2 765,832 - -0.4 765,832 - -1.6 765,832 - -1.3 765,832 - -0.3 765,832 - -1.5 765,832 - -1.1 765,832 - -0.4 765,832 - +0.4 765,832 - -0.4 765,832 - -3.2 765,832 - -1.9 765,832 - -0.5 765,832 - -0.7 765,832 - +0.1 765,848 - -0.2 765,870 + -0.9 765,870 + +0.3 765,870 + -0.7 765,870 + +0.0 765,870 + +1.6 765,870 + -1.2 765,871 - -0.5 765,871 - -0.4 765,871 - +0.2 765,871 - -1.5 765,871 - -1.6 765,871 - -0.5 765,948 + -0.4 765,948 + +0.0 765,948 + -0.4 765,948 + -3.6 765,948 + +0.6 765,949 - -0.3 766,019 + -0.7 766,019 + -3.2 766,019 + +0.3 766,020 - -1.2 766,020 - -0.2 766,020 - +0.4 766,020 - +0.6 766,020 - -0.4 766,020 - -0.1 766,046 + -0.7 766,160 + AMB_RS03635 0.13 -2.7 766,160 + AMB_RS03635 0.13 -1.0 766,161 - AMB_RS03635 0.13 +0.0 766,161 - AMB_RS03635 0.13 -1.7 766,282 + AMB_RS03635 0.18 -0.6 766,282 + AMB_RS03635 0.18 -0.3 766,282 + AMB_RS03635 0.18 -0.6 766,386 + AMB_RS03635 0.23 -1.7 766,387 - AMB_RS03635 0.23 +0.0 766,387 - AMB_RS03635 0.23 +0.0
Or see this region's nucleotide sequence