Experiment: 30_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03485 and AMB_RS03490 overlap by 4 nucleotides AMB_RS03490 and AMB_RS03495 are separated by 183 nucleotides AMB_RS03495 and AMB_RS03500 are separated by 48 nucleotides
AMB_RS03485: AMB_RS03485 - AEC family transporter, at 729,218 to 730,156
_RS03485
AMB_RS03490: AMB_RS03490 - cAMP-binding protein, at 730,153 to 730,554
_RS03490
AMB_RS03495: AMB_RS03495 - alpha/beta hydrolase, at 730,738 to 731,874
_RS03495
AMB_RS03500: AMB_RS03500 - DNA-protecting protein DprA, at 731,923 to 733,050
_RS03500
Position (kb) 730
731
732 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 729.807 kb on - strand, within AMB_RS03485 at 729.822 kb on + strand, within AMB_RS03485 at 729.822 kb on + strand, within AMB_RS03485 at 729.822 kb on + strand, within AMB_RS03485 at 729.822 kb on + strand, within AMB_RS03485 at 729.822 kb on + strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 729.823 kb on - strand, within AMB_RS03485 at 730.463 kb on + strand, within AMB_RS03490 at 730.463 kb on + strand, within AMB_RS03490 at 730.464 kb on - strand, within AMB_RS03490 at 730.594 kb on + strand at 730.594 kb on + strand at 730.595 kb on - strand at 730.654 kb on + strand at 730.846 kb on - strand at 730.906 kb on + strand, within AMB_RS03495 at 730.906 kb on + strand, within AMB_RS03495 at 730.907 kb on - strand, within AMB_RS03495 at 730.907 kb on - strand, within AMB_RS03495 at 730.907 kb on - strand, within AMB_RS03495 at 730.907 kb on - strand, within AMB_RS03495 at 730.907 kb on - strand, within AMB_RS03495 at 730.907 kb on - strand, within AMB_RS03495 at 730.907 kb on - strand, within AMB_RS03495 at 731.124 kb on + strand, within AMB_RS03495 at 731.125 kb on - strand, within AMB_RS03495 at 731.155 kb on + strand, within AMB_RS03495 at 731.155 kb on + strand, within AMB_RS03495 at 731.156 kb on - strand, within AMB_RS03495 at 731.156 kb on - strand, within AMB_RS03495 at 731.156 kb on - strand, within AMB_RS03495 at 731.156 kb on - strand, within AMB_RS03495 at 731.368 kb on + strand, within AMB_RS03495 at 731.385 kb on + strand, within AMB_RS03495 at 731.386 kb on - strand, within AMB_RS03495 at 731.695 kb on + strand, within AMB_RS03495 at 731.695 kb on + strand, within AMB_RS03495 at 731.731 kb on + strand, within AMB_RS03495 at 731.732 kb on - strand, within AMB_RS03495 at 731.732 kb on - strand, within AMB_RS03495 at 731.873 kb on - strand at 732.191 kb on - strand, within AMB_RS03500 at 732.358 kb on + strand, within AMB_RS03500 at 732.358 kb on + strand, within AMB_RS03500 at 732.358 kb on + strand, within AMB_RS03500 at 732.359 kb on - strand, within AMB_RS03500 at 732.359 kb on - strand, within AMB_RS03500 at 732.463 kb on + strand, within AMB_RS03500 at 732.463 kb on + strand, within AMB_RS03500 at 732.556 kb on + strand, within AMB_RS03500 at 732.556 kb on + strand, within AMB_RS03500 at 732.556 kb on + strand, within AMB_RS03500 at 732.557 kb on - strand, within AMB_RS03500 at 732.557 kb on - strand, within AMB_RS03500 at 732.557 kb on - strand, within AMB_RS03500 at 732.557 kb on - strand, within AMB_RS03500 at 732.557 kb on - strand, within AMB_RS03500 at 732.861 kb on + strand, within AMB_RS03500
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_2 remove 729,807 - AMB_RS03485 0.63 +0.0 729,822 + AMB_RS03485 0.64 -0.3 729,822 + AMB_RS03485 0.64 -1.7 729,822 + AMB_RS03485 0.64 -0.7 729,822 + AMB_RS03485 0.64 -0.6 729,822 + AMB_RS03485 0.64 -0.2 729,823 - AMB_RS03485 0.64 -2.4 729,823 - AMB_RS03485 0.64 +4.0 729,823 - AMB_RS03485 0.64 -1.4 729,823 - AMB_RS03485 0.64 +0.2 729,823 - AMB_RS03485 0.64 +0.6 729,823 - AMB_RS03485 0.64 -1.4 729,823 - AMB_RS03485 0.64 -0.1 729,823 - AMB_RS03485 0.64 -0.1 729,823 - AMB_RS03485 0.64 -0.3 729,823 - AMB_RS03485 0.64 -1.0 729,823 - AMB_RS03485 0.64 +0.2 730,463 + AMB_RS03490 0.77 -0.1 730,463 + AMB_RS03490 0.77 -0.2 730,464 - AMB_RS03490 0.77 -0.6 730,594 + -1.5 730,594 + -0.2 730,595 - +0.4 730,654 + -0.3 730,846 - +0.6 730,906 + AMB_RS03495 0.15 -2.5 730,906 + AMB_RS03495 0.15 -0.7 730,907 - AMB_RS03495 0.15 -1.2 730,907 - AMB_RS03495 0.15 -0.6 730,907 - AMB_RS03495 0.15 -4.4 730,907 - AMB_RS03495 0.15 -1.0 730,907 - AMB_RS03495 0.15 -1.4 730,907 - AMB_RS03495 0.15 +0.7 730,907 - AMB_RS03495 0.15 -1.2 731,124 + AMB_RS03495 0.34 -0.5 731,125 - AMB_RS03495 0.34 -0.4 731,155 + AMB_RS03495 0.37 +1.1 731,155 + AMB_RS03495 0.37 -0.7 731,156 - AMB_RS03495 0.37 -1.0 731,156 - AMB_RS03495 0.37 -1.2 731,156 - AMB_RS03495 0.37 -2.1 731,156 - AMB_RS03495 0.37 -1.2 731,368 + AMB_RS03495 0.55 -1.7 731,385 + AMB_RS03495 0.57 -1.2 731,386 - AMB_RS03495 0.57 +0.0 731,695 + AMB_RS03495 0.84 -4.9 731,695 + AMB_RS03495 0.84 +0.3 731,731 + AMB_RS03495 0.87 -2.1 731,732 - AMB_RS03495 0.87 -0.4 731,732 - AMB_RS03495 0.87 -1.8 731,873 - -1.7 732,191 - AMB_RS03500 0.24 -0.4 732,358 + AMB_RS03500 0.39 +0.0 732,358 + AMB_RS03500 0.39 +0.2 732,358 + AMB_RS03500 0.39 -0.7 732,359 - AMB_RS03500 0.39 -0.3 732,359 - AMB_RS03500 0.39 -3.3 732,463 + AMB_RS03500 0.48 -1.0 732,463 + AMB_RS03500 0.48 -2.2 732,556 + AMB_RS03500 0.56 +0.3 732,556 + AMB_RS03500 0.56 +0.7 732,556 + AMB_RS03500 0.56 +0.2 732,557 - AMB_RS03500 0.56 -0.3 732,557 - AMB_RS03500 0.56 -0.4 732,557 - AMB_RS03500 0.56 +0.7 732,557 - AMB_RS03500 0.56 -0.0 732,557 - AMB_RS03500 0.56 -0.6 732,861 + AMB_RS03500 0.83 -1.2
Or see this region's nucleotide sequence