Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03210

Experiment: 30_an_nonmag_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS03205 and AMB_RS03210 are separated by 435 nucleotidesAMB_RS03210 and AMB_RS03215 are separated by 102 nucleotides AMB_RS03205: AMB_RS03205 - DNA recombination/repair protein RecA, at 668,296 to 669,375 _RS03205 AMB_RS03210: AMB_RS03210 - DNA polymerase IV, at 669,811 to 670,992 _RS03210 AMB_RS03215: AMB_RS03215 - alpha/beta hydrolase, at 671,095 to 672,141 _RS03215 Position (kb) 669 670 671Strain fitness (log2 ratio) -3 -2 -1 0 1at 669.119 kb on - strand, within AMB_RS03205at 669.205 kb on + strand, within AMB_RS03205at 669.205 kb on + strand, within AMB_RS03205at 669.206 kb on - strand, within AMB_RS03205at 669.373 kb on + strandat 669.374 kb on - strandat 669.380 kb on + strandat 669.513 kb on + strandat 669.513 kb on + strandat 669.578 kb on + strandat 669.578 kb on + strandat 669.578 kb on + strandat 669.578 kb on + strandat 669.578 kb on + strandat 669.578 kb on + strandat 669.578 kb on + strandat 669.579 kb on - strandat 669.579 kb on - strandat 669.579 kb on - strandat 669.579 kb on - strandat 669.579 kb on - strandat 669.579 kb on - strandat 669.579 kb on - strandat 669.579 kb on - strandat 669.579 kb on - strandat 669.579 kb on - strandat 669.791 kb on + strandat 669.799 kb on + strandat 669.800 kb on - strandat 669.800 kb on - strandat 669.800 kb on - strandat 669.800 kb on - strandat 669.801 kb on + strandat 669.801 kb on + strandat 669.802 kb on - strandat 669.821 kb on - strandat 669.831 kb on + strandat 670.067 kb on - strand, within AMB_RS03210at 670.067 kb on - strand, within AMB_RS03210at 670.067 kb on - strand, within AMB_RS03210at 670.067 kb on - strand, within AMB_RS03210at 670.165 kb on + strand, within AMB_RS03210at 670.165 kb on + strand, within AMB_RS03210at 670.165 kb on + strand, within AMB_RS03210at 670.165 kb on + strand, within AMB_RS03210at 670.166 kb on - strand, within AMB_RS03210at 670.166 kb on - strand, within AMB_RS03210at 670.166 kb on - strand, within AMB_RS03210at 670.166 kb on - strand, within AMB_RS03210at 670.166 kb on - strand, within AMB_RS03210at 670.246 kb on + strand, within AMB_RS03210at 670.246 kb on + strand, within AMB_RS03210at 670.247 kb on - strand, within AMB_RS03210at 670.247 kb on - strand, within AMB_RS03210at 670.363 kb on + strand, within AMB_RS03210at 670.363 kb on + strand, within AMB_RS03210at 670.363 kb on + strand, within AMB_RS03210at 670.363 kb on + strand, within AMB_RS03210at 670.363 kb on + strand, within AMB_RS03210at 670.363 kb on + strand, within AMB_RS03210at 670.364 kb on - strand, within AMB_RS03210at 670.598 kb on + strand, within AMB_RS03210at 670.787 kb on + strand, within AMB_RS03210at 670.788 kb on - strand, within AMB_RS03210at 670.867 kb on - strand, within AMB_RS03210at 670.867 kb on - strand, within AMB_RS03210at 670.991 kb on - strandat 670.991 kb on - strandat 671.096 kb on + strandat 671.097 kb on - strandat 671.141 kb on + strandat 671.142 kb on - strandat 671.142 kb on - strandat 671.202 kb on - strand, within AMB_RS03215at 671.287 kb on + strand, within AMB_RS03215at 671.287 kb on + strand, within AMB_RS03215at 671.287 kb on + strand, within AMB_RS03215at 671.601 kb on - strand, within AMB_RS03215at 671.643 kb on - strand, within AMB_RS03215at 671.822 kb on + strand, within AMB_RS03215at 671.823 kb on - strand, within AMB_RS03215at 671.841 kb on + strand, within AMB_RS03215at 671.842 kb on - strand, within AMB_RS03215at 671.843 kb on + strand, within AMB_RS03215at 671.843 kb on + strand, within AMB_RS03215at 671.843 kb on + strand, within AMB_RS03215at 671.843 kb on + strand, within AMB_RS03215at 671.844 kb on - strand, within AMB_RS03215at 671.844 kb on - strand, within AMB_RS03215at 671.924 kb on + strand, within AMB_RS03215at 671.925 kb on - strand, within AMB_RS03215at 671.972 kb on + strand, within AMB_RS03215at 671.973 kb on - strand, within AMB_RS03215at 671.973 kb on - strand, within AMB_RS03215

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_2
remove
669,119 - AMB_RS03205 0.76 -2.7
669,205 + AMB_RS03205 0.84 -0.4
669,205 + AMB_RS03205 0.84 -2.2
669,206 - AMB_RS03205 0.84 -2.3
669,373 + -2.5
669,374 - -1.0
669,380 + -0.5
669,513 + -0.1
669,513 + -0.3
669,578 + -1.7
669,578 + -0.7
669,578 + -0.7
669,578 + -0.7
669,578 + -2.7
669,578 + -2.0
669,578 + -1.1
669,579 - -0.4
669,579 - -1.7
669,579 - -1.7
669,579 - -0.7
669,579 - -0.4
669,579 - +0.2
669,579 - +0.6
669,579 - -1.4
669,579 - -0.1
669,579 - -1.4
669,791 + -1.7
669,799 + -2.5
669,800 - -0.1
669,800 - -1.2
669,800 - +0.0
669,800 - -1.2
669,801 + +0.6
669,801 + +0.5
669,802 - -0.2
669,821 - -2.6
669,831 + -0.7
670,067 - AMB_RS03210 0.22 -1.0
670,067 - AMB_RS03210 0.22 -0.7
670,067 - AMB_RS03210 0.22 -2.4
670,067 - AMB_RS03210 0.22 -1.2
670,165 + AMB_RS03210 0.30 -0.6
670,165 + AMB_RS03210 0.30 -2.2
670,165 + AMB_RS03210 0.30 +0.6
670,165 + AMB_RS03210 0.30 -1.2
670,166 - AMB_RS03210 0.30 -0.8
670,166 - AMB_RS03210 0.30 +0.6
670,166 - AMB_RS03210 0.30 -1.2
670,166 - AMB_RS03210 0.30 -1.0
670,166 - AMB_RS03210 0.30 +0.6
670,246 + AMB_RS03210 0.37 -1.8
670,246 + AMB_RS03210 0.37 +0.5
670,247 - AMB_RS03210 0.37 +0.7
670,247 - AMB_RS03210 0.37 +0.4
670,363 + AMB_RS03210 0.47 -2.5
670,363 + AMB_RS03210 0.47 +0.9
670,363 + AMB_RS03210 0.47 -1.0
670,363 + AMB_RS03210 0.47 -0.4
670,363 + AMB_RS03210 0.47 -2.1
670,363 + AMB_RS03210 0.47 +0.0
670,364 - AMB_RS03210 0.47 +0.9
670,598 + AMB_RS03210 0.67 +0.0
670,787 + AMB_RS03210 0.83 -1.8
670,788 - AMB_RS03210 0.83 -1.4
670,867 - AMB_RS03210 0.89 -0.4
670,867 - AMB_RS03210 0.89 -0.4
670,991 - -1.0
670,991 - -2.4
671,096 + -1.0
671,097 - -1.0
671,141 + -0.4
671,142 - +0.6
671,142 - +0.0
671,202 - AMB_RS03215 0.10 -0.7
671,287 + AMB_RS03215 0.18 -0.6
671,287 + AMB_RS03215 0.18 +0.1
671,287 + AMB_RS03215 0.18 +1.0
671,601 - AMB_RS03215 0.48 -2.8
671,643 - AMB_RS03215 0.52 -1.4
671,822 + AMB_RS03215 0.69 -0.3
671,823 - AMB_RS03215 0.70 +0.1
671,841 + AMB_RS03215 0.71 -1.0
671,842 - AMB_RS03215 0.71 -1.2
671,843 + AMB_RS03215 0.71 +0.0
671,843 + AMB_RS03215 0.71 -1.4
671,843 + AMB_RS03215 0.71 -0.6
671,843 + AMB_RS03215 0.71 -2.0
671,844 - AMB_RS03215 0.72 -2.0
671,844 - AMB_RS03215 0.72 -1.1
671,924 + AMB_RS03215 0.79 -0.8
671,925 - AMB_RS03215 0.79 -2.5
671,972 + AMB_RS03215 0.84 -1.4
671,973 - AMB_RS03215 0.84 -1.5
671,973 - AMB_RS03215 0.84 -0.4

Or see this region's nucleotide sequence