Experiment: 30_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02990 and AMB_RS02995 are separated by 9 nucleotides AMB_RS02995 and AMB_RS03000 are separated by 83 nucleotides AMB_RS03000 and AMB_RS03005 are separated by 61 nucleotides AMB_RS03005 and AMB_RS03010 are separated by 5 nucleotides
AMB_RS02990: AMB_RS02990 - hypothetical protein, at 626,353 to 626,838
_RS02990
AMB_RS02995: AMB_RS02995 - anti-sigma factor antagonist, at 626,848 to 627,246
_RS02995
AMB_RS03000: AMB_RS03000 - acetoacetate--CoA ligase, at 627,330 to 629,288
_RS03000
AMB_RS03005: AMB_RS03005 - carbonate dehydratase, at 629,350 to 630,120
_RS03005
AMB_RS03010: AMB_RS03010 - hypothetical protein, at 630,126 to 630,908
_RS03010
Position (kb) 627
628
629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 626.341 kb on + strand at 626.362 kb on + strand at 626.362 kb on + strand at 626.363 kb on - strand at 626.849 kb on + strand at 626.850 kb on - strand at 627.084 kb on + strand, within AMB_RS02995 at 627.084 kb on + strand, within AMB_RS02995 at 627.084 kb on + strand, within AMB_RS02995 at 627.085 kb on - strand, within AMB_RS02995 at 627.086 kb on + strand, within AMB_RS02995 at 627.156 kb on - strand, within AMB_RS02995 at 627.187 kb on + strand, within AMB_RS02995 at 627.187 kb on + strand, within AMB_RS02995 at 627.188 kb on - strand, within AMB_RS02995 at 627.188 kb on - strand, within AMB_RS02995 at 627.188 kb on - strand, within AMB_RS02995 at 627.188 kb on - strand, within AMB_RS02995 at 627.192 kb on + strand, within AMB_RS02995 at 627.192 kb on + strand, within AMB_RS02995 at 627.192 kb on + strand, within AMB_RS02995 at 627.193 kb on - strand, within AMB_RS02995 at 627.193 kb on - strand, within AMB_RS02995 at 627.193 kb on - strand, within AMB_RS02995 at 627.193 kb on - strand, within AMB_RS02995 at 627.193 kb on - strand, within AMB_RS02995 at 627.204 kb on + strand, within AMB_RS02995 at 627.205 kb on - strand, within AMB_RS02995 at 627.235 kb on + strand at 627.246 kb on + strand at 627.435 kb on + strand at 627.435 kb on + strand at 627.436 kb on - strand at 627.436 kb on - strand at 627.436 kb on - strand at 627.766 kb on - strand, within AMB_RS03000 at 627.766 kb on - strand, within AMB_RS03000 at 627.766 kb on - strand, within AMB_RS03000 at 627.766 kb on - strand, within AMB_RS03000 at 627.918 kb on + strand, within AMB_RS03000 at 627.918 kb on + strand, within AMB_RS03000 at 627.918 kb on + strand, within AMB_RS03000 at 627.918 kb on + strand, within AMB_RS03000 at 627.919 kb on - strand, within AMB_RS03000 at 627.925 kb on - strand, within AMB_RS03000 at 628.011 kb on + strand, within AMB_RS03000 at 628.011 kb on + strand, within AMB_RS03000 at 628.012 kb on - strand, within AMB_RS03000 at 628.012 kb on - strand, within AMB_RS03000 at 628.014 kb on - strand, within AMB_RS03000 at 628.131 kb on + strand, within AMB_RS03000 at 628.131 kb on + strand, within AMB_RS03000 at 628.131 kb on + strand, within AMB_RS03000 at 628.132 kb on - strand, within AMB_RS03000 at 628.132 kb on - strand, within AMB_RS03000 at 628.132 kb on - strand, within AMB_RS03000 at 628.140 kb on + strand, within AMB_RS03000 at 628.140 kb on + strand, within AMB_RS03000 at 628.140 kb on + strand, within AMB_RS03000 at 628.141 kb on - strand, within AMB_RS03000 at 628.141 kb on - strand, within AMB_RS03000 at 628.141 kb on - strand, within AMB_RS03000 at 628.260 kb on + strand, within AMB_RS03000 at 628.261 kb on - strand, within AMB_RS03000 at 628.261 kb on - strand, within AMB_RS03000 at 628.261 kb on - strand, within AMB_RS03000 at 628.261 kb on - strand, within AMB_RS03000 at 628.261 kb on - strand, within AMB_RS03000 at 628.335 kb on + strand, within AMB_RS03000 at 628.335 kb on + strand, within AMB_RS03000 at 628.336 kb on - strand, within AMB_RS03000 at 628.372 kb on + strand, within AMB_RS03000 at 628.372 kb on + strand, within AMB_RS03000 at 628.373 kb on - strand, within AMB_RS03000 at 628.536 kb on + strand, within AMB_RS03000 at 628.536 kb on + strand, within AMB_RS03000 at 628.536 kb on + strand, within AMB_RS03000 at 628.536 kb on + strand, within AMB_RS03000 at 628.537 kb on - strand, within AMB_RS03000 at 628.537 kb on - strand, within AMB_RS03000 at 628.537 kb on - strand, within AMB_RS03000 at 628.537 kb on - strand, within AMB_RS03000 at 628.537 kb on - strand, within AMB_RS03000 at 628.537 kb on - strand, within AMB_RS03000 at 628.542 kb on + strand, within AMB_RS03000 at 628.543 kb on - strand, within AMB_RS03000 at 628.638 kb on + strand, within AMB_RS03000 at 628.639 kb on - strand, within AMB_RS03000 at 628.736 kb on + strand, within AMB_RS03000 at 628.736 kb on + strand, within AMB_RS03000 at 628.736 kb on + strand, within AMB_RS03000 at 628.794 kb on + strand, within AMB_RS03000 at 628.795 kb on - strand, within AMB_RS03000 at 628.795 kb on - strand, within AMB_RS03000 at 628.806 kb on + strand, within AMB_RS03000 at 628.806 kb on + strand, within AMB_RS03000 at 628.856 kb on + strand, within AMB_RS03000 at 628.944 kb on + strand, within AMB_RS03000 at 628.945 kb on - strand, within AMB_RS03000 at 628.945 kb on - strand, within AMB_RS03000 at 628.945 kb on - strand, within AMB_RS03000 at 629.419 kb on - strand at 629.506 kb on + strand, within AMB_RS03005 at 629.686 kb on + strand, within AMB_RS03005 at 629.687 kb on - strand, within AMB_RS03005 at 630.001 kb on + strand, within AMB_RS03005 at 630.001 kb on + strand, within AMB_RS03005 at 630.001 kb on + strand, within AMB_RS03005 at 630.002 kb on - strand, within AMB_RS03005 at 630.227 kb on + strand, within AMB_RS03010 at 630.227 kb on + strand, within AMB_RS03010 at 630.227 kb on + strand, within AMB_RS03010 at 630.228 kb on - strand, within AMB_RS03010
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_2 remove 626,341 + +0.3 626,362 + -0.8 626,362 + -1.2 626,363 - -0.7 626,849 + -0.4 626,850 - -1.3 627,084 + AMB_RS02995 0.59 +0.6 627,084 + AMB_RS02995 0.59 -0.9 627,084 + AMB_RS02995 0.59 -1.2 627,085 - AMB_RS02995 0.59 -1.9 627,086 + AMB_RS02995 0.60 -0.4 627,156 - AMB_RS02995 0.77 +0.1 627,187 + AMB_RS02995 0.85 +0.6 627,187 + AMB_RS02995 0.85 +0.6 627,188 - AMB_RS02995 0.85 -1.6 627,188 - AMB_RS02995 0.85 -0.7 627,188 - AMB_RS02995 0.85 -0.9 627,188 - AMB_RS02995 0.85 -0.1 627,192 + AMB_RS02995 0.86 -1.2 627,192 + AMB_RS02995 0.86 -0.4 627,192 + AMB_RS02995 0.86 +0.6 627,193 - AMB_RS02995 0.86 -1.4 627,193 - AMB_RS02995 0.86 -2.5 627,193 - AMB_RS02995 0.86 -1.4 627,193 - AMB_RS02995 0.86 -2.5 627,193 - AMB_RS02995 0.86 -0.2 627,204 + AMB_RS02995 0.89 -3.5 627,205 - AMB_RS02995 0.89 +0.9 627,235 + +1.6 627,246 + +0.1 627,435 + -0.2 627,435 + -1.7 627,436 - +0.4 627,436 - -2.6 627,436 - +0.8 627,766 - AMB_RS03000 0.22 +0.6 627,766 - AMB_RS03000 0.22 -1.7 627,766 - AMB_RS03000 0.22 -0.4 627,766 - AMB_RS03000 0.22 -0.6 627,918 + AMB_RS03000 0.30 -1.7 627,918 + AMB_RS03000 0.30 -0.8 627,918 + AMB_RS03000 0.30 +2.3 627,918 + AMB_RS03000 0.30 +0.6 627,919 - AMB_RS03000 0.30 -0.6 627,925 - AMB_RS03000 0.30 -0.9 628,011 + AMB_RS03000 0.35 -1.5 628,011 + AMB_RS03000 0.35 -1.7 628,012 - AMB_RS03000 0.35 +0.6 628,012 - AMB_RS03000 0.35 -0.9 628,014 - AMB_RS03000 0.35 +1.4 628,131 + AMB_RS03000 0.41 -0.4 628,131 + AMB_RS03000 0.41 -0.7 628,131 + AMB_RS03000 0.41 -1.5 628,132 - AMB_RS03000 0.41 -1.1 628,132 - AMB_RS03000 0.41 +0.1 628,132 - AMB_RS03000 0.41 -0.2 628,140 + AMB_RS03000 0.41 -1.5 628,140 + AMB_RS03000 0.41 -2.7 628,140 + AMB_RS03000 0.41 -0.1 628,141 - AMB_RS03000 0.41 -0.4 628,141 - AMB_RS03000 0.41 +0.2 628,141 - AMB_RS03000 0.41 +0.4 628,260 + AMB_RS03000 0.47 -0.2 628,261 - AMB_RS03000 0.48 -1.4 628,261 - AMB_RS03000 0.48 -1.3 628,261 - AMB_RS03000 0.48 -1.7 628,261 - AMB_RS03000 0.48 -1.4 628,261 - AMB_RS03000 0.48 -2.3 628,335 + AMB_RS03000 0.51 -0.8 628,335 + AMB_RS03000 0.51 -0.4 628,336 - AMB_RS03000 0.51 +0.6 628,372 + AMB_RS03000 0.53 -1.8 628,372 + AMB_RS03000 0.53 +0.8 628,373 - AMB_RS03000 0.53 -0.9 628,536 + AMB_RS03000 0.62 +0.1 628,536 + AMB_RS03000 0.62 -0.0 628,536 + AMB_RS03000 0.62 -0.2 628,536 + AMB_RS03000 0.62 +0.1 628,537 - AMB_RS03000 0.62 -0.4 628,537 - AMB_RS03000 0.62 +0.1 628,537 - AMB_RS03000 0.62 -2.3 628,537 - AMB_RS03000 0.62 -0.5 628,537 - AMB_RS03000 0.62 -1.9 628,537 - AMB_RS03000 0.62 -0.6 628,542 + AMB_RS03000 0.62 -0.4 628,543 - AMB_RS03000 0.62 -1.5 628,638 + AMB_RS03000 0.67 -1.5 628,639 - AMB_RS03000 0.67 +0.3 628,736 + AMB_RS03000 0.72 -2.1 628,736 + AMB_RS03000 0.72 -0.2 628,736 + AMB_RS03000 0.72 -0.3 628,794 + AMB_RS03000 0.75 -1.7 628,795 - AMB_RS03000 0.75 +3.8 628,795 - AMB_RS03000 0.75 -0.5 628,806 + AMB_RS03000 0.75 -0.0 628,806 + AMB_RS03000 0.75 +0.4 628,856 + AMB_RS03000 0.78 -0.7 628,944 + AMB_RS03000 0.82 -1.1 628,945 - AMB_RS03000 0.82 -0.1 628,945 - AMB_RS03000 0.82 -0.8 628,945 - AMB_RS03000 0.82 +0.3 629,419 - -3.2 629,506 + AMB_RS03005 0.20 +1.8 629,686 + AMB_RS03005 0.44 -0.7 629,687 - AMB_RS03005 0.44 -0.9 630,001 + AMB_RS03005 0.84 -2.0 630,001 + AMB_RS03005 0.84 +0.1 630,001 + AMB_RS03005 0.84 -1.8 630,002 - AMB_RS03005 0.85 +0.1 630,227 + AMB_RS03010 0.13 -0.9 630,227 + AMB_RS03010 0.13 -0.2 630,227 + AMB_RS03010 0.13 -2.9 630,228 - AMB_RS03010 0.13 +0.7
Or see this region's nucleotide sequence