Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02880

Experiment: 30_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02880 and AMB_RS02885 are separated by 65 nucleotides AMB_RS02880: AMB_RS02880 - hypothetical protein, at 605,690 to 605,962 _RS02880 AMB_RS02885: AMB_RS02885 - sel1 repeat family protein, at 606,028 to 607,215 _RS02885 Position (kb) 605 606Strain fitness (log2 ratio) -2 -1 0 1at 604.720 kb on + strandat 604.720 kb on + strandat 604.879 kb on + strandat 604.975 kb on - strandat 605.025 kb on + strandat 605.026 kb on - strandat 605.026 kb on - strandat 605.027 kb on + strandat 605.279 kb on - strandat 605.414 kb on - strandat 605.414 kb on - strandat 605.456 kb on - strandat 605.633 kb on + strandat 605.634 kb on - strandat 605.634 kb on - strandat 605.701 kb on - strandat 605.826 kb on + strand, within AMB_RS02880at 605.827 kb on - strand, within AMB_RS02880at 605.827 kb on - strand, within AMB_RS02880at 605.953 kb on + strandat 605.960 kb on + strandat 605.960 kb on + strandat 605.960 kb on + strandat 605.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_2
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604,720 + -0.6
604,720 + -1.3
604,879 + -0.2
604,975 - -0.9
605,025 + -0.1
605,026 - +0.0
605,026 - -0.5
605,027 + -0.4
605,279 - -0.7
605,414 - +0.6
605,414 - +1.6
605,456 - -0.7
605,633 + +0.1
605,634 - +0.9
605,634 - -1.0
605,701 - -1.7
605,826 + AMB_RS02880 0.50 -2.5
605,827 - AMB_RS02880 0.50 -1.7
605,827 - AMB_RS02880 0.50 -1.2
605,953 + -2.5
605,960 + +0.4
605,960 + -0.3
605,960 + +0.8
605,961 - -1.7

Or see this region's nucleotide sequence