Experiment: 30_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02690 and AMB_RS02695 are separated by 248 nucleotides AMB_RS02695 and AMB_RS02700 are separated by 154 nucleotides
AMB_RS02690: AMB_RS02690 - dihydropyrimidine dehydrogenase subunit A, at 562,515 to 563,930
_RS02690
AMB_RS02695: AMB_RS02695 - undecaprenyl-diphosphatase 1, at 564,179 to 564,982
_RS02695
AMB_RS02700: AMB_RS02700 - carboxypeptidase, at 565,137 to 567,248
_RS02700
Position (kb) 564
565 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 563.203 kb on + strand, within AMB_RS02690 at 563.203 kb on + strand, within AMB_RS02690 at 563.203 kb on + strand, within AMB_RS02690 at 563.203 kb on + strand, within AMB_RS02690 at 563.203 kb on + strand, within AMB_RS02690 at 563.204 kb on - strand, within AMB_RS02690 at 563.204 kb on - strand, within AMB_RS02690 at 563.368 kb on + strand, within AMB_RS02690 at 563.369 kb on - strand, within AMB_RS02690 at 563.369 kb on - strand, within AMB_RS02690 at 563.690 kb on - strand, within AMB_RS02690 at 563.690 kb on - strand, within AMB_RS02690 at 564.144 kb on + strand at 564.144 kb on + strand at 564.144 kb on + strand at 564.145 kb on - strand at 564.145 kb on - strand at 564.145 kb on - strand at 564.145 kb on - strand at 564.145 kb on - strand at 564.189 kb on + strand at 564.189 kb on + strand at 564.190 kb on - strand at 564.351 kb on - strand, within AMB_RS02695 at 564.416 kb on + strand, within AMB_RS02695 at 564.646 kb on - strand, within AMB_RS02695 at 564.905 kb on - strand at 564.905 kb on - strand at 564.905 kb on - strand at 564.905 kb on - strand at 564.965 kb on + strand at 564.966 kb on - strand at 564.992 kb on - strand at 565.074 kb on + strand at 565.075 kb on - strand at 565.075 kb on - strand at 565.135 kb on + strand at 565.135 kb on + strand at 565.135 kb on + strand at 565.136 kb on - strand at 565.138 kb on + strand at 565.138 kb on + strand at 565.139 kb on - strand at 565.414 kb on + strand, within AMB_RS02700 at 565.414 kb on + strand, within AMB_RS02700 at 565.879 kb on + strand, within AMB_RS02700 at 565.891 kb on + strand, within AMB_RS02700 at 565.892 kb on - strand, within AMB_RS02700 at 565.978 kb on + strand, within AMB_RS02700
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_2 remove 563,203 + AMB_RS02690 0.49 +0.1 563,203 + AMB_RS02690 0.49 -0.0 563,203 + AMB_RS02690 0.49 +0.2 563,203 + AMB_RS02690 0.49 -1.5 563,203 + AMB_RS02690 0.49 -0.7 563,204 - AMB_RS02690 0.49 -1.1 563,204 - AMB_RS02690 0.49 -1.1 563,368 + AMB_RS02690 0.60 -1.0 563,369 - AMB_RS02690 0.60 +1.7 563,369 - AMB_RS02690 0.60 -0.2 563,690 - AMB_RS02690 0.83 -1.4 563,690 - AMB_RS02690 0.83 -0.5 564,144 + +0.2 564,144 + +0.5 564,144 + -0.7 564,145 - +1.5 564,145 - +0.1 564,145 - +0.6 564,145 - -1.3 564,145 - -1.3 564,189 + +1.0 564,189 + -1.8 564,190 - +0.1 564,351 - AMB_RS02695 0.21 -0.8 564,416 + AMB_RS02695 0.29 -2.0 564,646 - AMB_RS02695 0.58 -4.9 564,905 - +0.9 564,905 - -0.7 564,905 - +0.5 564,905 - -1.8 564,965 + -0.6 564,966 - -0.7 564,992 - -0.9 565,074 + -0.9 565,075 - +0.0 565,075 - -0.3 565,135 + -0.3 565,135 + +0.1 565,135 + -0.3 565,136 - -0.7 565,138 + +0.1 565,138 + +0.4 565,139 - -2.2 565,414 + AMB_RS02700 0.13 -1.9 565,414 + AMB_RS02700 0.13 -1.3 565,879 + AMB_RS02700 0.35 -0.7 565,891 + AMB_RS02700 0.36 -0.4 565,892 - AMB_RS02700 0.36 -1.1 565,978 + AMB_RS02700 0.40 -0.7
Or see this region's nucleotide sequence