Experiment: 30_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01870 and AMB_RS01875 are separated by 100 nucleotides AMB_RS01875 and AMB_RS01880 are separated by 42 nucleotides AMB_RS01880 and AMB_RS01885 are separated by 70 nucleotides AMB_RS01885 and AMB_RS01890 overlap by 53 nucleotides
AMB_RS01870: AMB_RS01870 - DUF3489 domain-containing protein, at 400,202 to 400,792
_RS01870
AMB_RS01875: AMB_RS01875 - hypothetical protein, at 400,893 to 401,072
_RS01875
AMB_RS01880: AMB_RS01880 - hypothetical protein, at 401,115 to 401,507
_RS01880
AMB_RS01885: AMB_RS01885 - hypothetical protein, at 401,578 to 402,129
_RS01885
AMB_RS01890: AMB_RS01890 - phage terminase large subunit family protein, at 402,077 to 404,062
_RS01890
Position (kb) 401
402
403 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 400.837 kb on + strand at 400.838 kb on - strand at 400.931 kb on - strand, within AMB_RS01875 at 400.931 kb on - strand, within AMB_RS01875 at 400.931 kb on - strand, within AMB_RS01875 at 400.931 kb on - strand, within AMB_RS01875 at 400.980 kb on + strand, within AMB_RS01875 at 400.980 kb on + strand, within AMB_RS01875 at 400.981 kb on - strand, within AMB_RS01875 at 400.981 kb on - strand, within AMB_RS01875 at 401.076 kb on + strand at 401.077 kb on - strand at 401.077 kb on - strand at 401.077 kb on - strand at 401.167 kb on + strand, within AMB_RS01880 at 401.168 kb on - strand, within AMB_RS01880 at 401.168 kb on - strand, within AMB_RS01880 at 401.543 kb on - strand at 401.566 kb on - strand at 401.599 kb on + strand at 401.599 kb on + strand at 401.599 kb on + strand at 401.599 kb on + strand at 401.600 kb on - strand at 401.600 kb on - strand at 401.600 kb on - strand at 401.600 kb on - strand at 401.743 kb on - strand, within AMB_RS01885 at 401.790 kb on + strand, within AMB_RS01885 at 401.790 kb on + strand, within AMB_RS01885 at 401.790 kb on + strand, within AMB_RS01885 at 401.791 kb on - strand, within AMB_RS01885 at 401.791 kb on - strand, within AMB_RS01885 at 401.791 kb on - strand, within AMB_RS01885 at 401.791 kb on - strand, within AMB_RS01885 at 401.791 kb on - strand, within AMB_RS01885 at 401.809 kb on - strand, within AMB_RS01885 at 402.135 kb on - strand at 402.135 kb on - strand at 402.291 kb on - strand, within AMB_RS01890 at 402.291 kb on - strand, within AMB_RS01890 at 402.334 kb on - strand, within AMB_RS01890 at 402.556 kb on + strand, within AMB_RS01890 at 402.557 kb on - strand, within AMB_RS01890 at 402.557 kb on - strand, within AMB_RS01890 at 402.672 kb on - strand, within AMB_RS01890 at 402.807 kb on - strand, within AMB_RS01890 at 402.807 kb on - strand, within AMB_RS01890 at 402.920 kb on + strand, within AMB_RS01890 at 402.921 kb on - strand, within AMB_RS01890 at 402.921 kb on - strand, within AMB_RS01890 at 403.021 kb on + strand, within AMB_RS01890 at 403.049 kb on + strand, within AMB_RS01890 at 403.049 kb on + strand, within AMB_RS01890 at 403.049 kb on + strand, within AMB_RS01890 at 403.050 kb on - strand, within AMB_RS01890 at 403.050 kb on - strand, within AMB_RS01890 at 403.050 kb on - strand, within AMB_RS01890
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_2 remove 400,837 + +0.1 400,838 - +0.9 400,931 - AMB_RS01875 0.21 +0.7 400,931 - AMB_RS01875 0.21 -0.6 400,931 - AMB_RS01875 0.21 -0.9 400,931 - AMB_RS01875 0.21 -0.6 400,980 + AMB_RS01875 0.48 -0.8 400,980 + AMB_RS01875 0.48 -0.7 400,981 - AMB_RS01875 0.49 -0.6 400,981 - AMB_RS01875 0.49 -2.6 401,076 + -0.2 401,077 - +0.1 401,077 - -2.4 401,077 - +0.1 401,167 + AMB_RS01880 0.13 -1.7 401,168 - AMB_RS01880 0.13 -1.8 401,168 - AMB_RS01880 0.13 +0.1 401,543 - -0.6 401,566 - -0.2 401,599 + -0.7 401,599 + +0.2 401,599 + -0.8 401,599 + -0.7 401,600 - -0.5 401,600 - -0.6 401,600 - -2.9 401,600 - -0.3 401,743 - AMB_RS01885 0.30 +0.1 401,790 + AMB_RS01885 0.38 +0.2 401,790 + AMB_RS01885 0.38 -0.5 401,790 + AMB_RS01885 0.38 -0.2 401,791 - AMB_RS01885 0.39 +1.1 401,791 - AMB_RS01885 0.39 -0.8 401,791 - AMB_RS01885 0.39 -0.5 401,791 - AMB_RS01885 0.39 -0.0 401,791 - AMB_RS01885 0.39 -0.9 401,809 - AMB_RS01885 0.42 -0.6 402,135 - -2.2 402,135 - -0.3 402,291 - AMB_RS01890 0.11 -2.6 402,291 - AMB_RS01890 0.11 -0.3 402,334 - AMB_RS01890 0.13 -0.4 402,556 + AMB_RS01890 0.24 -0.0 402,557 - AMB_RS01890 0.24 +1.7 402,557 - AMB_RS01890 0.24 +0.1 402,672 - AMB_RS01890 0.30 +0.7 402,807 - AMB_RS01890 0.37 -1.2 402,807 - AMB_RS01890 0.37 -3.5 402,920 + AMB_RS01890 0.42 -1.1 402,921 - AMB_RS01890 0.42 -1.5 402,921 - AMB_RS01890 0.42 -0.2 403,021 + AMB_RS01890 0.48 -1.8 403,049 + AMB_RS01890 0.49 -0.7 403,049 + AMB_RS01890 0.49 -0.6 403,049 + AMB_RS01890 0.49 -1.2 403,050 - AMB_RS01890 0.49 -2.6 403,050 - AMB_RS01890 0.49 -2.6 403,050 - AMB_RS01890 0.49 -3.7
Or see this region's nucleotide sequence