Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01785

Experiment: 30_an_nonmag_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS01775 and AMB_RS01780 are separated by 291 nucleotidesAMB_RS01780 and AMB_RS01785 are separated by 29 nucleotidesAMB_RS01785 and AMB_RS01790 overlap by 29 nucleotidesAMB_RS01790 and AMB_RS01795 are separated by 16 nucleotides AMB_RS01775: AMB_RS01775 - hypothetical protein, at 385,338 to 386,096 _RS01775 AMB_RS01780: AMB_RS01780 - sigma-70 family RNA polymerase sigma factor, at 386,388 to 386,951 _RS01780 AMB_RS01785: AMB_RS01785 - hypothetical protein, at 386,981 to 387,376 _RS01785 AMB_RS01790: AMB_RS01790 - oxidoreductase, at 387,348 to 388,103 _RS01790 AMB_RS01795: AMB_RS01795 - DUF669 domain-containing protein, at 388,120 to 388,626 _RS01795 Position (kb) 386 387 388Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 386.234 kb on + strandat 386.493 kb on - strand, within AMB_RS01780at 386.579 kb on + strand, within AMB_RS01780at 386.580 kb on - strand, within AMB_RS01780at 386.580 kb on - strand, within AMB_RS01780at 386.580 kb on - strand, within AMB_RS01780at 386.946 kb on - strandat 386.946 kb on - strandat 386.946 kb on - strandat 386.946 kb on - strandat 386.946 kb on - strandat 386.946 kb on - strandat 387.044 kb on - strand, within AMB_RS01785at 387.090 kb on - strand, within AMB_RS01785at 387.090 kb on - strand, within AMB_RS01785at 387.090 kb on - strand, within AMB_RS01785at 387.090 kb on - strand, within AMB_RS01785at 387.090 kb on - strand, within AMB_RS01785at 387.252 kb on - strand, within AMB_RS01785at 387.252 kb on - strand, within AMB_RS01785at 387.252 kb on - strand, within AMB_RS01785at 387.252 kb on - strand, within AMB_RS01785at 387.252 kb on - strand, within AMB_RS01785at 387.330 kb on - strand, within AMB_RS01785at 387.330 kb on - strand, within AMB_RS01785at 387.347 kb on - strandat 387.565 kb on - strand, within AMB_RS01790at 387.565 kb on - strand, within AMB_RS01790at 387.565 kb on - strand, within AMB_RS01790at 387.565 kb on - strand, within AMB_RS01790at 387.565 kb on - strand, within AMB_RS01790at 387.693 kb on + strand, within AMB_RS01790at 387.693 kb on + strand, within AMB_RS01790at 387.694 kb on - strand, within AMB_RS01790at 387.694 kb on - strand, within AMB_RS01790at 387.694 kb on - strand, within AMB_RS01790at 387.724 kb on - strand, within AMB_RS01790at 387.724 kb on - strand, within AMB_RS01790at 387.724 kb on - strand, within AMB_RS01790at 387.725 kb on + strand, within AMB_RS01790at 387.725 kb on + strand, within AMB_RS01790at 387.726 kb on - strand, within AMB_RS01790at 387.726 kb on - strand, within AMB_RS01790at 387.726 kb on - strand, within AMB_RS01790at 387.726 kb on - strand, within AMB_RS01790at 387.726 kb on - strand, within AMB_RS01790at 387.726 kb on - strand, within AMB_RS01790at 387.786 kb on - strand, within AMB_RS01790at 387.826 kb on - strand, within AMB_RS01790at 387.826 kb on - strand, within AMB_RS01790at 387.826 kb on - strand, within AMB_RS01790at 387.835 kb on - strand, within AMB_RS01790at 387.835 kb on - strand, within AMB_RS01790at 387.835 kb on - strand, within AMB_RS01790at 387.872 kb on - strand, within AMB_RS01790at 387.988 kb on - strand, within AMB_RS01790at 388.102 kb on - strandat 388.195 kb on + strand, within AMB_RS01795at 388.195 kb on + strand, within AMB_RS01795at 388.195 kb on + strand, within AMB_RS01795at 388.196 kb on - strand, within AMB_RS01795at 388.196 kb on - strand, within AMB_RS01795at 388.196 kb on - strand, within AMB_RS01795at 388.196 kb on - strand, within AMB_RS01795at 388.252 kb on + strand, within AMB_RS01795at 388.253 kb on - strand, within AMB_RS01795at 388.253 kb on - strand, within AMB_RS01795at 388.253 kb on - strand, within AMB_RS01795

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_2
remove
386,234 + +0.4
386,493 - AMB_RS01780 0.19 -0.6
386,579 + AMB_RS01780 0.34 -0.6
386,580 - AMB_RS01780 0.34 -0.8
386,580 - AMB_RS01780 0.34 -0.3
386,580 - AMB_RS01780 0.34 -0.3
386,946 - -0.9
386,946 - -0.1
386,946 - -1.5
386,946 - -0.6
386,946 - -1.1
386,946 - -1.1
387,044 - AMB_RS01785 0.16 -0.4
387,090 - AMB_RS01785 0.28 -0.9
387,090 - AMB_RS01785 0.28 -0.3
387,090 - AMB_RS01785 0.28 +0.6
387,090 - AMB_RS01785 0.28 -2.3
387,090 - AMB_RS01785 0.28 +0.2
387,252 - AMB_RS01785 0.68 -1.8
387,252 - AMB_RS01785 0.68 -0.2
387,252 - AMB_RS01785 0.68 -1.1
387,252 - AMB_RS01785 0.68 +0.2
387,252 - AMB_RS01785 0.68 -2.7
387,330 - AMB_RS01785 0.88 +0.7
387,330 - AMB_RS01785 0.88 -0.2
387,347 - -0.3
387,565 - AMB_RS01790 0.29 +0.1
387,565 - AMB_RS01790 0.29 +0.1
387,565 - AMB_RS01790 0.29 -0.6
387,565 - AMB_RS01790 0.29 -0.4
387,565 - AMB_RS01790 0.29 +1.7
387,693 + AMB_RS01790 0.46 -0.6
387,693 + AMB_RS01790 0.46 +0.2
387,694 - AMB_RS01790 0.46 -0.3
387,694 - AMB_RS01790 0.46 -3.1
387,694 - AMB_RS01790 0.46 -1.5
387,724 - AMB_RS01790 0.50 -0.1
387,724 - AMB_RS01790 0.50 -1.9
387,724 - AMB_RS01790 0.50 -0.6
387,725 + AMB_RS01790 0.50 -2.0
387,725 + AMB_RS01790 0.50 -0.3
387,726 - AMB_RS01790 0.50 -0.5
387,726 - AMB_RS01790 0.50 -1.5
387,726 - AMB_RS01790 0.50 -1.5
387,726 - AMB_RS01790 0.50 -0.3
387,726 - AMB_RS01790 0.50 -2.1
387,726 - AMB_RS01790 0.50 -0.6
387,786 - AMB_RS01790 0.58 -1.3
387,826 - AMB_RS01790 0.63 +4.2
387,826 - AMB_RS01790 0.63 +0.2
387,826 - AMB_RS01790 0.63 -1.9
387,835 - AMB_RS01790 0.64 -1.1
387,835 - AMB_RS01790 0.64 +0.3
387,835 - AMB_RS01790 0.64 -1.3
387,872 - AMB_RS01790 0.69 -1.1
387,988 - AMB_RS01790 0.85 -0.8
388,102 - +0.7
388,195 + AMB_RS01795 0.15 -0.7
388,195 + AMB_RS01795 0.15 +0.7
388,195 + AMB_RS01795 0.15 -4.4
388,196 - AMB_RS01795 0.15 -1.5
388,196 - AMB_RS01795 0.15 -0.6
388,196 - AMB_RS01795 0.15 -0.6
388,196 - AMB_RS01795 0.15 -1.1
388,252 + AMB_RS01795 0.26 -3.3
388,253 - AMB_RS01795 0.26 -1.3
388,253 - AMB_RS01795 0.26 -0.3
388,253 - AMB_RS01795 0.26 +0.0

Or see this region's nucleotide sequence