Experiment: 30_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01580 and AMB_RS01585 overlap by 9 nucleotides AMB_RS01585 and AMB_RS01590 are separated by 15 nucleotides AMB_RS01590 and AMB_RS01595 overlap by 4 nucleotides AMB_RS01595 and AMB_RS01600 are separated by 59 nucleotides
AMB_RS01580: AMB_RS01580 - small-conductance mechanosensitive channel, at 352,142 to 353,422
_RS01580
AMB_RS01585: AMB_RS01585 - regulatory protein RecX, at 353,414 to 353,962
_RS01585
AMB_RS01590: AMB_RS01590 - multidrug ABC transporter permease, at 353,978 to 354,790
_RS01590
AMB_RS01595: AMB_RS01595 - XRE family transcriptional regulator, at 354,787 to 355,593
_RS01595
AMB_RS01600: AMB_RS01600 - class I SAM-dependent methyltransferase, at 355,653 to 356,417
_RS01600
Position (kb) 353
354
355 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 353.117 kb on + strand, within AMB_RS01580 at 353.117 kb on + strand, within AMB_RS01580 at 353.117 kb on + strand, within AMB_RS01580 at 353.117 kb on + strand, within AMB_RS01580 at 353.118 kb on - strand, within AMB_RS01580 at 353.118 kb on - strand, within AMB_RS01580 at 353.144 kb on + strand, within AMB_RS01580 at 353.144 kb on + strand, within AMB_RS01580 at 353.144 kb on + strand, within AMB_RS01580 at 353.715 kb on + strand, within AMB_RS01585 at 353.716 kb on - strand, within AMB_RS01585 at 353.733 kb on + strand, within AMB_RS01585 at 353.734 kb on - strand, within AMB_RS01585 at 353.868 kb on + strand, within AMB_RS01585 at 353.868 kb on + strand, within AMB_RS01585 at 353.868 kb on + strand, within AMB_RS01585 at 353.868 kb on + strand, within AMB_RS01585 at 353.880 kb on + strand, within AMB_RS01585 at 353.880 kb on + strand, within AMB_RS01585 at 353.881 kb on - strand, within AMB_RS01585 at 353.881 kb on - strand, within AMB_RS01585 at 353.904 kb on + strand, within AMB_RS01585 at 353.905 kb on - strand, within AMB_RS01585 at 353.905 kb on - strand, within AMB_RS01585 at 353.905 kb on - strand, within AMB_RS01585 at 353.974 kb on + strand at 353.974 kb on + strand at 353.974 kb on + strand at 353.974 kb on + strand at 353.974 kb on + strand at 353.974 kb on + strand at 353.974 kb on + strand at 353.974 kb on + strand at 353.974 kb on + strand at 353.975 kb on - strand at 353.975 kb on - strand at 353.975 kb on - strand at 353.975 kb on - strand at 353.975 kb on - strand at 354.089 kb on + strand, within AMB_RS01590 at 354.090 kb on - strand, within AMB_RS01590 at 354.090 kb on - strand, within AMB_RS01590 at 354.090 kb on - strand, within AMB_RS01590 at 354.216 kb on + strand, within AMB_RS01590 at 354.217 kb on - strand, within AMB_RS01590 at 354.217 kb on - strand, within AMB_RS01590 at 354.253 kb on + strand, within AMB_RS01590 at 354.254 kb on - strand, within AMB_RS01590 at 354.292 kb on + strand, within AMB_RS01590 at 354.292 kb on + strand, within AMB_RS01590 at 354.449 kb on + strand, within AMB_RS01590 at 354.450 kb on - strand, within AMB_RS01590 at 354.584 kb on + strand, within AMB_RS01590 at 354.585 kb on - strand, within AMB_RS01590 at 354.585 kb on - strand, within AMB_RS01590 at 354.585 kb on - strand, within AMB_RS01590 at 354.644 kb on + strand, within AMB_RS01590 at 354.644 kb on + strand, within AMB_RS01590 at 354.644 kb on + strand, within AMB_RS01590 at 354.644 kb on + strand, within AMB_RS01590 at 354.644 kb on + strand, within AMB_RS01590 at 354.645 kb on - strand, within AMB_RS01590 at 354.773 kb on + strand at 354.774 kb on - strand at 354.774 kb on - strand at 354.788 kb on + strand at 354.886 kb on + strand, within AMB_RS01595 at 354.886 kb on + strand, within AMB_RS01595 at 354.887 kb on - strand, within AMB_RS01595 at 355.206 kb on - strand, within AMB_RS01595 at 355.253 kb on - strand, within AMB_RS01595 at 355.253 kb on - strand, within AMB_RS01595 at 355.313 kb on + strand, within AMB_RS01595 at 355.313 kb on + strand, within AMB_RS01595 at 355.314 kb on - strand, within AMB_RS01595 at 355.314 kb on - strand, within AMB_RS01595 at 355.574 kb on - strand at 355.576 kb on - strand at 355.593 kb on + strand at 355.713 kb on + strand at 355.714 kb on - strand at 355.714 kb on - strand at 355.714 kb on - strand at 355.714 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_2 remove 353,117 + AMB_RS01580 0.76 +0.9 353,117 + AMB_RS01580 0.76 -0.8 353,117 + AMB_RS01580 0.76 -1.3 353,117 + AMB_RS01580 0.76 -0.5 353,118 - AMB_RS01580 0.76 -1.1 353,118 - AMB_RS01580 0.76 -1.7 353,144 + AMB_RS01580 0.78 -0.3 353,144 + AMB_RS01580 0.78 -0.0 353,144 + AMB_RS01580 0.78 -4.1 353,715 + AMB_RS01585 0.55 -1.3 353,716 - AMB_RS01585 0.55 -0.3 353,733 + AMB_RS01585 0.58 -0.3 353,734 - AMB_RS01585 0.58 -2.6 353,868 + AMB_RS01585 0.83 -0.6 353,868 + AMB_RS01585 0.83 -1.1 353,868 + AMB_RS01585 0.83 -1.3 353,868 + AMB_RS01585 0.83 -1.9 353,880 + AMB_RS01585 0.85 -0.5 353,880 + AMB_RS01585 0.85 -2.5 353,881 - AMB_RS01585 0.85 -0.9 353,881 - AMB_RS01585 0.85 -0.0 353,904 + AMB_RS01585 0.89 -0.1 353,905 - AMB_RS01585 0.89 -0.1 353,905 - AMB_RS01585 0.89 +0.1 353,905 - AMB_RS01585 0.89 -0.4 353,974 + -2.9 353,974 + +0.0 353,974 + -0.3 353,974 + +0.1 353,974 + -1.1 353,974 + +0.1 353,974 + -1.7 353,974 + -1.3 353,974 + +0.7 353,975 - -0.7 353,975 - -1.1 353,975 - +0.7 353,975 - +1.0 353,975 - -0.9 354,089 + AMB_RS01590 0.14 -0.6 354,090 - AMB_RS01590 0.14 -0.2 354,090 - AMB_RS01590 0.14 -1.5 354,090 - AMB_RS01590 0.14 +0.2 354,216 + AMB_RS01590 0.29 -0.0 354,217 - AMB_RS01590 0.29 -1.7 354,217 - AMB_RS01590 0.29 -2.4 354,253 + AMB_RS01590 0.34 -0.2 354,254 - AMB_RS01590 0.34 +0.0 354,292 + AMB_RS01590 0.39 -0.7 354,292 + AMB_RS01590 0.39 -0.9 354,449 + AMB_RS01590 0.58 -0.1 354,450 - AMB_RS01590 0.58 +0.1 354,584 + AMB_RS01590 0.75 +0.4 354,585 - AMB_RS01590 0.75 -0.7 354,585 - AMB_RS01590 0.75 -1.9 354,585 - AMB_RS01590 0.75 +0.8 354,644 + AMB_RS01590 0.82 -0.3 354,644 + AMB_RS01590 0.82 -1.3 354,644 + AMB_RS01590 0.82 -1.7 354,644 + AMB_RS01590 0.82 +0.7 354,644 + AMB_RS01590 0.82 -0.3 354,645 - AMB_RS01590 0.82 -0.3 354,773 + -1.7 354,774 - +1.7 354,774 - -0.5 354,788 + +1.4 354,886 + AMB_RS01595 0.12 -0.1 354,886 + AMB_RS01595 0.12 -0.4 354,887 - AMB_RS01595 0.12 -2.6 355,206 - AMB_RS01595 0.52 -2.0 355,253 - AMB_RS01595 0.58 +0.5 355,253 - AMB_RS01595 0.58 -3.0 355,313 + AMB_RS01595 0.65 -0.3 355,313 + AMB_RS01595 0.65 +0.1 355,314 - AMB_RS01595 0.65 -2.1 355,314 - AMB_RS01595 0.65 +0.5 355,574 - -0.7 355,576 - +0.7 355,593 + -0.9 355,713 + -1.6 355,714 - -0.8 355,714 - +0.3 355,714 - -0.1 355,714 - -0.3
Or see this region's nucleotide sequence