Experiment: 30_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01160 and AMB_RS01165 are separated by 44 nucleotides AMB_RS01165 and AMB_RS01170 are separated by 11 nucleotides AMB_RS01170 and AMB_RS01175 are separated by 23 nucleotides
AMB_RS01160: AMB_RS01160 - glycosyltransferase, at 257,818 to 258,912
_RS01160
AMB_RS01165: AMB_RS01165 - hypothetical protein, at 258,957 to 259,316
_RS01165
AMB_RS01170: AMB_RS01170 - copper export protein, at 259,328 to 260,911
_RS01170
AMB_RS01175: AMB_RS01175 - C4-dicarboxylate ABC transporter, at 260,935 to 262,242
_RS01175
Position (kb) 259
260
261 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 258.359 kb on + strand, within AMB_RS01160 at 258.359 kb on + strand, within AMB_RS01160 at 258.359 kb on + strand, within AMB_RS01160 at 258.360 kb on - strand, within AMB_RS01160 at 258.360 kb on - strand, within AMB_RS01160 at 258.435 kb on - strand, within AMB_RS01160 at 258.840 kb on + strand at 258.841 kb on - strand at 258.841 kb on - strand at 258.929 kb on + strand at 258.929 kb on + strand at 258.929 kb on + strand at 258.929 kb on + strand at 258.929 kb on + strand at 258.930 kb on - strand at 258.930 kb on - strand at 258.930 kb on - strand at 258.930 kb on - strand at 258.930 kb on - strand at 258.930 kb on - strand at 258.930 kb on - strand at 258.930 kb on - strand at 258.931 kb on + strand at 258.931 kb on + strand at 258.931 kb on + strand at 258.931 kb on + strand at 258.931 kb on + strand at 258.931 kb on + strand at 258.931 kb on + strand at 258.931 kb on + strand at 258.932 kb on - strand at 258.932 kb on - strand at 259.002 kb on - strand, within AMB_RS01165 at 259.102 kb on - strand, within AMB_RS01165 at 259.102 kb on - strand, within AMB_RS01165 at 259.236 kb on + strand, within AMB_RS01165 at 259.236 kb on + strand, within AMB_RS01165 at 259.236 kb on + strand, within AMB_RS01165 at 259.237 kb on - strand, within AMB_RS01165 at 259.237 kb on - strand, within AMB_RS01165 at 259.237 kb on - strand, within AMB_RS01165 at 259.238 kb on + strand, within AMB_RS01165 at 259.729 kb on - strand, within AMB_RS01170 at 259.790 kb on + strand, within AMB_RS01170 at 259.790 kb on + strand, within AMB_RS01170 at 259.790 kb on + strand, within AMB_RS01170 at 259.793 kb on + strand, within AMB_RS01170 at 259.793 kb on + strand, within AMB_RS01170 at 259.793 kb on + strand, within AMB_RS01170 at 259.793 kb on + strand, within AMB_RS01170 at 259.794 kb on - strand, within AMB_RS01170 at 259.794 kb on - strand, within AMB_RS01170 at 259.982 kb on + strand, within AMB_RS01170 at 259.982 kb on + strand, within AMB_RS01170 at 259.983 kb on - strand, within AMB_RS01170 at 260.019 kb on - strand, within AMB_RS01170 at 260.758 kb on + strand at 260.759 kb on - strand at 260.952 kb on + strand at 260.952 kb on + strand at 260.952 kb on + strand at 261.019 kb on + strand at 261.019 kb on + strand at 261.019 kb on + strand at 261.019 kb on + strand at 261.020 kb on - strand at 261.020 kb on - strand at 261.334 kb on - strand, within AMB_RS01175 at 261.395 kb on - strand, within AMB_RS01175 at 261.871 kb on + strand, within AMB_RS01175 at 261.871 kb on + strand, within AMB_RS01175 at 261.871 kb on + strand, within AMB_RS01175 at 261.871 kb on + strand, within AMB_RS01175 at 261.871 kb on + strand, within AMB_RS01175 at 261.871 kb on + strand, within AMB_RS01175 at 261.872 kb on - strand, within AMB_RS01175 at 261.872 kb on - strand, within AMB_RS01175 at 261.872 kb on - strand, within AMB_RS01175
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_2 remove 258,359 + AMB_RS01160 0.49 -0.2 258,359 + AMB_RS01160 0.49 -1.2 258,359 + AMB_RS01160 0.49 -1.9 258,360 - AMB_RS01160 0.49 +0.2 258,360 - AMB_RS01160 0.49 -0.3 258,435 - AMB_RS01160 0.56 -2.6 258,840 + -0.8 258,841 - -0.2 258,841 - -2.2 258,929 + -0.0 258,929 + -1.0 258,929 + -3.5 258,929 + +0.8 258,929 + +0.5 258,930 - -1.9 258,930 - -0.8 258,930 - +0.5 258,930 - -0.7 258,930 - -1.2 258,930 - -0.6 258,930 - -0.5 258,930 - +0.5 258,931 + -1.4 258,931 + -0.5 258,931 + +0.3 258,931 + -0.4 258,931 + -0.4 258,931 + +0.9 258,931 + +1.8 258,931 + -0.0 258,932 - -1.4 258,932 - +0.3 259,002 - AMB_RS01165 0.12 -3.6 259,102 - AMB_RS01165 0.40 -0.8 259,102 - AMB_RS01165 0.40 -0.0 259,236 + AMB_RS01165 0.78 -0.1 259,236 + AMB_RS01165 0.78 -3.0 259,236 + AMB_RS01165 0.78 -0.2 259,237 - AMB_RS01165 0.78 -0.7 259,237 - AMB_RS01165 0.78 -2.3 259,237 - AMB_RS01165 0.78 -0.7 259,238 + AMB_RS01165 0.78 -0.5 259,729 - AMB_RS01170 0.25 -0.8 259,790 + AMB_RS01170 0.29 -0.1 259,790 + AMB_RS01170 0.29 -0.3 259,790 + AMB_RS01170 0.29 +1.4 259,793 + AMB_RS01170 0.29 -0.2 259,793 + AMB_RS01170 0.29 +0.8 259,793 + AMB_RS01170 0.29 -1.2 259,793 + AMB_RS01170 0.29 +1.8 259,794 - AMB_RS01170 0.29 -0.5 259,794 - AMB_RS01170 0.29 -1.5 259,982 + AMB_RS01170 0.41 -1.2 259,982 + AMB_RS01170 0.41 -0.6 259,983 - AMB_RS01170 0.41 -1.2 260,019 - AMB_RS01170 0.44 -1.7 260,758 + -0.5 260,759 - -0.5 260,952 + -0.8 260,952 + +1.0 260,952 + -0.2 261,019 + -0.8 261,019 + -1.4 261,019 + -0.6 261,019 + +0.8 261,020 - +0.2 261,020 - -0.8 261,334 - AMB_RS01175 0.31 -0.9 261,395 - AMB_RS01175 0.35 -0.3 261,871 + AMB_RS01175 0.72 -0.7 261,871 + AMB_RS01175 0.72 -0.4 261,871 + AMB_RS01175 0.72 -0.4 261,871 + AMB_RS01175 0.72 +1.8 261,871 + AMB_RS01175 0.72 -2.2 261,871 + AMB_RS01175 0.72 +0.8 261,872 - AMB_RS01175 0.72 -0.2 261,872 - AMB_RS01175 0.72 +0.3 261,872 - AMB_RS01175 0.72 +0.2
Or see this region's nucleotide sequence