Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00970

Experiment: 30_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00960 and AMB_RS00965 overlap by 4 nucleotidesAMB_RS00965 and AMB_RS00970 are separated by 235 nucleotidesAMB_RS00970 and AMB_RS00975 overlap by 1 nucleotidesAMB_RS00975 and AMB_RS00980 are separated by 85 nucleotides AMB_RS00960: AMB_RS00960 - DNA-binding response regulator, at 218,003 to 218,674 _RS00960 AMB_RS00965: AMB_RS00965 - membrane protein, at 218,671 to 218,961 _RS00965 AMB_RS00970: AMB_RS00970 - DUF1924 domain-containing protein, at 219,197 to 220,033 _RS00970 AMB_RS00975: AMB_RS00975 - hypothetical protein, at 220,033 to 220,494 _RS00975 AMB_RS00980: AMB_RS00980 - hypothetical protein, at 220,580 to 221,104 _RS00980 Position (kb) 219 220 221Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 218.382 kb on + strand, within AMB_RS00960at 218.382 kb on + strand, within AMB_RS00960at 218.383 kb on - strand, within AMB_RS00960at 218.383 kb on - strand, within AMB_RS00960at 218.383 kb on - strand, within AMB_RS00960at 218.541 kb on + strand, within AMB_RS00960at 218.541 kb on + strand, within AMB_RS00960at 218.542 kb on - strand, within AMB_RS00960at 218.717 kb on + strand, within AMB_RS00965at 218.717 kb on + strand, within AMB_RS00965at 218.720 kb on + strand, within AMB_RS00965at 218.720 kb on + strand, within AMB_RS00965at 218.720 kb on + strand, within AMB_RS00965at 218.720 kb on + strand, within AMB_RS00965at 219.089 kb on + strandat 219.089 kb on + strandat 219.090 kb on - strandat 219.090 kb on - strandat 219.095 kb on + strandat 219.095 kb on + strandat 219.138 kb on + strandat 219.138 kb on + strandat 219.138 kb on + strandat 219.138 kb on + strandat 219.138 kb on + strandat 219.138 kb on + strandat 219.139 kb on - strandat 219.139 kb on - strandat 219.139 kb on - strandat 219.139 kb on - strandat 219.139 kb on - strandat 219.139 kb on - strandat 219.144 kb on + strandat 219.144 kb on + strandat 219.144 kb on + strandat 219.269 kb on + strandat 219.269 kb on + strandat 219.269 kb on + strandat 219.269 kb on + strandat 219.269 kb on + strandat 219.269 kb on + strandat 219.269 kb on + strandat 219.269 kb on + strandat 219.270 kb on - strandat 219.293 kb on + strand, within AMB_RS00970at 219.293 kb on + strand, within AMB_RS00970at 219.293 kb on + strand, within AMB_RS00970at 219.293 kb on + strand, within AMB_RS00970at 219.293 kb on + strand, within AMB_RS00970at 219.293 kb on + strand, within AMB_RS00970at 219.293 kb on + strand, within AMB_RS00970at 219.293 kb on + strand, within AMB_RS00970at 219.293 kb on + strand, within AMB_RS00970at 219.293 kb on + strand, within AMB_RS00970at 219.293 kb on + strand, within AMB_RS00970at 219.294 kb on - strand, within AMB_RS00970at 219.294 kb on - strand, within AMB_RS00970at 219.294 kb on - strand, within AMB_RS00970at 219.294 kb on - strand, within AMB_RS00970at 219.294 kb on - strand, within AMB_RS00970at 219.294 kb on - strand, within AMB_RS00970at 219.317 kb on + strand, within AMB_RS00970at 219.318 kb on - strand, within AMB_RS00970at 219.809 kb on + strand, within AMB_RS00970at 219.810 kb on - strand, within AMB_RS00970at 219.851 kb on + strand, within AMB_RS00970at 219.851 kb on + strand, within AMB_RS00970at 219.851 kb on + strand, within AMB_RS00970at 220.007 kb on + strandat 220.007 kb on + strandat 220.007 kb on + strandat 220.007 kb on + strandat 220.007 kb on + strandat 220.007 kb on + strandat 220.008 kb on - strandat 220.008 kb on - strandat 220.016 kb on + strandat 220.016 kb on + strandat 220.016 kb on + strandat 220.016 kb on + strandat 220.016 kb on + strandat 220.016 kb on + strandat 220.016 kb on + strandat 220.016 kb on + strandat 220.016 kb on + strandat 220.016 kb on + strandat 220.016 kb on + strandat 220.016 kb on + strandat 220.018 kb on + strandat 220.018 kb on + strandat 220.018 kb on + strandat 220.018 kb on + strandat 220.018 kb on + strandat 220.018 kb on + strandat 220.018 kb on + strandat 220.018 kb on + strandat 220.018 kb on + strandat 220.018 kb on + strandat 220.018 kb on + strandat 220.019 kb on - strandat 220.019 kb on - strandat 220.019 kb on - strandat 220.480 kb on + strandat 220.480 kb on + strandat 220.480 kb on + strandat 220.480 kb on + strandat 220.480 kb on + strandat 220.480 kb on + strandat 220.582 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_2
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218,382 + AMB_RS00960 0.56 -2.5
218,382 + AMB_RS00960 0.56 -0.5
218,383 - AMB_RS00960 0.57 +0.8
218,383 - AMB_RS00960 0.57 -4.3
218,383 - AMB_RS00960 0.57 -4.5
218,541 + AMB_RS00960 0.80 -2.2
218,541 + AMB_RS00960 0.80 -2.0
218,542 - AMB_RS00960 0.80 -1.0
218,717 + AMB_RS00965 0.16 -1.2
218,717 + AMB_RS00965 0.16 -0.5
218,720 + AMB_RS00965 0.17 -2.7
218,720 + AMB_RS00965 0.17 -0.8
218,720 + AMB_RS00965 0.17 -2.5
218,720 + AMB_RS00965 0.17 -3.2
219,089 + -0.2
219,089 + -4.3
219,090 - -1.5
219,090 - -2.6
219,095 + -1.5
219,095 + -1.2
219,138 + -1.5
219,138 + -2.8
219,138 + -2.8
219,138 + -1.6
219,138 + +0.2
219,138 + -0.2
219,139 - -1.9
219,139 - -1.2
219,139 - -1.8
219,139 - +0.0
219,139 - +1.8
219,139 - -1.4
219,144 + -2.3
219,144 + -2.0
219,144 + -1.4
219,269 + -0.2
219,269 + +0.2
219,269 + -0.2
219,269 + -0.8
219,269 + +1.8
219,269 + -1.8
219,269 + -2.3
219,269 + -5.1
219,270 - -0.8
219,293 + AMB_RS00970 0.11 +0.2
219,293 + AMB_RS00970 0.11 -0.8
219,293 + AMB_RS00970 0.11 +1.8
219,293 + AMB_RS00970 0.11 -4.3
219,293 + AMB_RS00970 0.11 -1.2
219,293 + AMB_RS00970 0.11 -3.2
219,293 + AMB_RS00970 0.11 +0.8
219,293 + AMB_RS00970 0.11 -0.8
219,293 + AMB_RS00970 0.11 -2.5
219,293 + AMB_RS00970 0.11 -0.2
219,293 + AMB_RS00970 0.11 -3.3
219,294 - AMB_RS00970 0.12 -0.5
219,294 - AMB_RS00970 0.12 +0.2
219,294 - AMB_RS00970 0.12 -2.8
219,294 - AMB_RS00970 0.12 +0.2
219,294 - AMB_RS00970 0.12 -0.2
219,294 - AMB_RS00970 0.12 -3.8
219,317 + AMB_RS00970 0.14 -0.8
219,318 - AMB_RS00970 0.14 -1.8
219,809 + AMB_RS00970 0.73 -0.2
219,810 - AMB_RS00970 0.73 -2.1
219,851 + AMB_RS00970 0.78 -2.1
219,851 + AMB_RS00970 0.78 -1.0
219,851 + AMB_RS00970 0.78 +0.2
220,007 + -0.7
220,007 + +0.1
220,007 + -1.9
220,007 + -1.2
220,007 + -1.2
220,007 + +0.8
220,008 - +1.3
220,008 - +0.4
220,016 + -1.3
220,016 + +0.2
220,016 + -3.0
220,016 + -2.2
220,016 + -2.0
220,016 + +0.1
220,016 + -2.7
220,016 + -1.0
220,016 + -1.1
220,016 + -0.9
220,016 + +0.8
220,016 + -1.0
220,018 + -0.8
220,018 + -0.5
220,018 + -3.0
220,018 + -1.8
220,018 + -1.3
220,018 + -1.0
220,018 + -2.4
220,018 + -2.8
220,018 + -2.0
220,018 + -3.2
220,018 + -1.5
220,019 - -0.2
220,019 - -2.8
220,019 - -2.2
220,480 + -0.7
220,480 + -0.8
220,480 + -0.8
220,480 + -0.7
220,480 + -0.8
220,480 + -2.3
220,582 - -0.3

Or see this region's nucleotide sequence