Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00940

Experiment: 30_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00935 and AMB_RS00940 are separated by 10 nucleotidesAMB_RS00940 and AMB_RS00945 overlap by 59 nucleotides AMB_RS00935: AMB_RS00935 - methyl-accepting chemotaxis protein, at 212,045 to 213,376 _RS00935 AMB_RS00940: AMB_RS00940 - PAS domain S-box protein, at 213,387 to 213,917 _RS00940 AMB_RS00945: AMB_RS00945 - hypothetical protein, at 213,859 to 214,929 _RS00945 AMB_RS00950: AMB_RS00950 - Serine phosphatase RsbU, at 214,901 to 216,592 _RS00950 Position (kb) 213 214Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 212.916 kb on + strand, within AMB_RS00935at 212.916 kb on + strand, within AMB_RS00935at 212.916 kb on + strand, within AMB_RS00935at 212.917 kb on - strand, within AMB_RS00935at 212.917 kb on - strand, within AMB_RS00935at 212.917 kb on - strand, within AMB_RS00935at 212.917 kb on - strand, within AMB_RS00935at 212.955 kb on + strand, within AMB_RS00935at 212.955 kb on + strand, within AMB_RS00935at 212.956 kb on - strand, within AMB_RS00935at 212.964 kb on + strand, within AMB_RS00935at 212.965 kb on - strand, within AMB_RS00935at 212.965 kb on - strand, within AMB_RS00935at 213.388 kb on + strandat 213.418 kb on + strandat 213.418 kb on + strandat 213.418 kb on + strandat 213.418 kb on + strandat 213.419 kb on - strandat 213.419 kb on - strandat 213.419 kb on - strandat 213.419 kb on - strandat 213.419 kb on - strandat 213.419 kb on - strandat 213.419 kb on - strandat 213.419 kb on - strandat 213.419 kb on - strandat 213.419 kb on - strandat 213.419 kb on - strandat 213.526 kb on + strand, within AMB_RS00940at 213.526 kb on + strand, within AMB_RS00940at 213.526 kb on + strand, within AMB_RS00940at 213.526 kb on + strand, within AMB_RS00940at 213.526 kb on + strand, within AMB_RS00940at 213.584 kb on - strand, within AMB_RS00940at 213.584 kb on - strand, within AMB_RS00940at 213.584 kb on - strand, within AMB_RS00940at 213.611 kb on - strand, within AMB_RS00940at 213.611 kb on - strand, within AMB_RS00940at 213.611 kb on - strand, within AMB_RS00940at 213.621 kb on + strand, within AMB_RS00940at 213.621 kb on + strand, within AMB_RS00940at 213.621 kb on + strand, within AMB_RS00940at 213.622 kb on - strand, within AMB_RS00940at 213.622 kb on - strand, within AMB_RS00940at 213.622 kb on - strand, within AMB_RS00940at 213.673 kb on + strand, within AMB_RS00940at 213.673 kb on + strand, within AMB_RS00940at 213.673 kb on + strand, within AMB_RS00940at 213.673 kb on + strand, within AMB_RS00940at 213.673 kb on + strand, within AMB_RS00940at 213.674 kb on - strand, within AMB_RS00940at 213.674 kb on - strand, within AMB_RS00940at 213.674 kb on - strand, within AMB_RS00940at 213.674 kb on - strand, within AMB_RS00940at 213.790 kb on + strand, within AMB_RS00940at 213.791 kb on - strand, within AMB_RS00940at 213.823 kb on + strand, within AMB_RS00940at 213.827 kb on + strand, within AMB_RS00940at 213.828 kb on - strand, within AMB_RS00940at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.115 kb on + strand, within AMB_RS00945at 214.116 kb on - strand, within AMB_RS00945at 214.116 kb on - strand, within AMB_RS00945at 214.116 kb on - strand, within AMB_RS00945at 214.116 kb on - strand, within AMB_RS00945at 214.116 kb on - strand, within AMB_RS00945at 214.116 kb on - strand, within AMB_RS00945at 214.116 kb on - strand, within AMB_RS00945at 214.249 kb on + strand, within AMB_RS00945at 214.282 kb on + strand, within AMB_RS00945at 214.283 kb on - strand, within AMB_RS00945at 214.283 kb on - strand, within AMB_RS00945at 214.424 kb on + strand, within AMB_RS00945at 214.425 kb on - strand, within AMB_RS00945at 214.425 kb on - strand, within AMB_RS00945at 214.425 kb on - strand, within AMB_RS00945at 214.425 kb on - strand, within AMB_RS00945at 214.429 kb on + strand, within AMB_RS00945at 214.430 kb on - strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.441 kb on + strand, within AMB_RS00945at 214.442 kb on - strand, within AMB_RS00945at 214.442 kb on - strand, within AMB_RS00945at 214.442 kb on - strand, within AMB_RS00945at 214.443 kb on + strand, within AMB_RS00945at 214.444 kb on - strand, within AMB_RS00945at 214.444 kb on - strand, within AMB_RS00945at 214.459 kb on + strand, within AMB_RS00945at 214.459 kb on + strand, within AMB_RS00945at 214.459 kb on + strand, within AMB_RS00945at 214.459 kb on + strand, within AMB_RS00945at 214.459 kb on + strand, within AMB_RS00945at 214.459 kb on + strand, within AMB_RS00945at 214.460 kb on - strand, within AMB_RS00945at 214.460 kb on - strand, within AMB_RS00945at 214.460 kb on - strand, within AMB_RS00945at 214.460 kb on - strand, within AMB_RS00945at 214.460 kb on - strand, within AMB_RS00945at 214.460 kb on - strand, within AMB_RS00945at 214.460 kb on - strand, within AMB_RS00945at 214.639 kb on + strand, within AMB_RS00945at 214.639 kb on + strand, within AMB_RS00945at 214.640 kb on - strand, within AMB_RS00945at 214.677 kb on + strand, within AMB_RS00945at 214.677 kb on + strand, within AMB_RS00945at 214.677 kb on + strand, within AMB_RS00945at 214.678 kb on - strand, within AMB_RS00945at 214.678 kb on - strand, within AMB_RS00945at 214.744 kb on + strand, within AMB_RS00945at 214.744 kb on + strand, within AMB_RS00945at 214.744 kb on + strand, within AMB_RS00945at 214.744 kb on + strand, within AMB_RS00945at 214.745 kb on - strand, within AMB_RS00945at 214.745 kb on - strand, within AMB_RS00945at 214.745 kb on - strand, within AMB_RS00945at 214.745 kb on - strand, within AMB_RS00945at 214.745 kb on - strand, within AMB_RS00945at 214.745 kb on - strand, within AMB_RS00945at 214.849 kb on + strandat 214.849 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_2
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212,916 + AMB_RS00935 0.65 -0.5
212,916 + AMB_RS00935 0.65 -0.1
212,916 + AMB_RS00935 0.65 +2.0
212,917 - AMB_RS00935 0.65 -0.8
212,917 - AMB_RS00935 0.65 -0.8
212,917 - AMB_RS00935 0.65 +0.6
212,917 - AMB_RS00935 0.65 -0.2
212,955 + AMB_RS00935 0.68 -0.4
212,955 + AMB_RS00935 0.68 -0.1
212,956 - AMB_RS00935 0.68 -0.3
212,964 + AMB_RS00935 0.69 -0.2
212,965 - AMB_RS00935 0.69 +1.8
212,965 - AMB_RS00935 0.69 -0.5
213,388 + -0.1
213,418 + -2.4
213,418 + +0.2
213,418 + +0.9
213,418 + -3.7
213,419 - -1.2
213,419 - +0.3
213,419 - -1.5
213,419 - -1.0
213,419 - -0.2
213,419 - -1.4
213,419 - -0.9
213,419 - -0.4
213,419 - -0.8
213,419 - -0.5
213,419 - -0.5
213,526 + AMB_RS00940 0.26 +1.8
213,526 + AMB_RS00940 0.26 +0.2
213,526 + AMB_RS00940 0.26 +1.8
213,526 + AMB_RS00940 0.26 -0.1
213,526 + AMB_RS00940 0.26 +0.2
213,584 - AMB_RS00940 0.37 -1.2
213,584 - AMB_RS00940 0.37 -0.3
213,584 - AMB_RS00940 0.37 +0.1
213,611 - AMB_RS00940 0.42 +0.2
213,611 - AMB_RS00940 0.42 -0.2
213,611 - AMB_RS00940 0.42 -0.1
213,621 + AMB_RS00940 0.44 -2.7
213,621 + AMB_RS00940 0.44 +0.2
213,621 + AMB_RS00940 0.44 -3.8
213,622 - AMB_RS00940 0.44 +2.5
213,622 - AMB_RS00940 0.44 +1.8
213,622 - AMB_RS00940 0.44 -0.2
213,673 + AMB_RS00940 0.54 -0.6
213,673 + AMB_RS00940 0.54 -0.8
213,673 + AMB_RS00940 0.54 -1.0
213,673 + AMB_RS00940 0.54 -0.2
213,673 + AMB_RS00940 0.54 +0.0
213,674 - AMB_RS00940 0.54 +0.9
213,674 - AMB_RS00940 0.54 -0.4
213,674 - AMB_RS00940 0.54 -1.0
213,674 - AMB_RS00940 0.54 -1.8
213,790 + AMB_RS00940 0.76 -0.2
213,791 - AMB_RS00940 0.76 -0.2
213,823 + AMB_RS00940 0.82 -0.4
213,827 + AMB_RS00940 0.83 +0.1
213,828 - AMB_RS00940 0.83 -0.6
214,115 + AMB_RS00945 0.24 -0.3
214,115 + AMB_RS00945 0.24 +1.0
214,115 + AMB_RS00945 0.24 -1.8
214,115 + AMB_RS00945 0.24 -0.4
214,115 + AMB_RS00945 0.24 -0.8
214,115 + AMB_RS00945 0.24 +0.8
214,115 + AMB_RS00945 0.24 -1.4
214,115 + AMB_RS00945 0.24 -0.5
214,115 + AMB_RS00945 0.24 -0.2
214,115 + AMB_RS00945 0.24 +0.2
214,115 + AMB_RS00945 0.24 -2.0
214,115 + AMB_RS00945 0.24 +0.5
214,116 - AMB_RS00945 0.24 -0.2
214,116 - AMB_RS00945 0.24 -0.5
214,116 - AMB_RS00945 0.24 -1.0
214,116 - AMB_RS00945 0.24 +0.6
214,116 - AMB_RS00945 0.24 +0.4
214,116 - AMB_RS00945 0.24 +0.1
214,116 - AMB_RS00945 0.24 -1.4
214,249 + AMB_RS00945 0.36 +0.7
214,282 + AMB_RS00945 0.39 -0.5
214,283 - AMB_RS00945 0.40 -0.4
214,283 - AMB_RS00945 0.40 -0.1
214,424 + AMB_RS00945 0.53 +0.2
214,425 - AMB_RS00945 0.53 +0.2
214,425 - AMB_RS00945 0.53 +0.4
214,425 - AMB_RS00945 0.53 -0.9
214,425 - AMB_RS00945 0.53 -0.7
214,429 + AMB_RS00945 0.53 -1.2
214,430 - AMB_RS00945 0.53 -2.5
214,441 + AMB_RS00945 0.54 -1.0
214,441 + AMB_RS00945 0.54 -1.9
214,441 + AMB_RS00945 0.54 -0.4
214,441 + AMB_RS00945 0.54 +1.5
214,441 + AMB_RS00945 0.54 -1.0
214,441 + AMB_RS00945 0.54 +0.2
214,441 + AMB_RS00945 0.54 -0.2
214,441 + AMB_RS00945 0.54 +0.8
214,441 + AMB_RS00945 0.54 +0.3
214,441 + AMB_RS00945 0.54 -0.3
214,441 + AMB_RS00945 0.54 +0.2
214,441 + AMB_RS00945 0.54 +0.2
214,442 - AMB_RS00945 0.54 -0.4
214,442 - AMB_RS00945 0.54 -3.2
214,442 - AMB_RS00945 0.54 -2.2
214,443 + AMB_RS00945 0.55 -3.7
214,444 - AMB_RS00945 0.55 +1.8
214,444 - AMB_RS00945 0.55 +0.9
214,459 + AMB_RS00945 0.56 -0.2
214,459 + AMB_RS00945 0.56 -0.7
214,459 + AMB_RS00945 0.56 -0.3
214,459 + AMB_RS00945 0.56 -2.4
214,459 + AMB_RS00945 0.56 -0.3
214,459 + AMB_RS00945 0.56 -1.2
214,460 - AMB_RS00945 0.56 -2.0
214,460 - AMB_RS00945 0.56 -0.7
214,460 - AMB_RS00945 0.56 -1.8
214,460 - AMB_RS00945 0.56 -1.8
214,460 - AMB_RS00945 0.56 -2.0
214,460 - AMB_RS00945 0.56 -0.8
214,460 - AMB_RS00945 0.56 +0.8
214,639 + AMB_RS00945 0.73 -0.5
214,639 + AMB_RS00945 0.73 -0.5
214,640 - AMB_RS00945 0.73 -0.8
214,677 + AMB_RS00945 0.76 -0.1
214,677 + AMB_RS00945 0.76 +0.2
214,677 + AMB_RS00945 0.76 -2.2
214,678 - AMB_RS00945 0.76 +0.4
214,678 - AMB_RS00945 0.76 -1.0
214,744 + AMB_RS00945 0.83 -1.5
214,744 + AMB_RS00945 0.83 -1.2
214,744 + AMB_RS00945 0.83 -0.2
214,744 + AMB_RS00945 0.83 -1.8
214,745 - AMB_RS00945 0.83 -1.7
214,745 - AMB_RS00945 0.83 +1.5
214,745 - AMB_RS00945 0.83 -1.4
214,745 - AMB_RS00945 0.83 -0.9
214,745 - AMB_RS00945 0.83 -0.5
214,745 - AMB_RS00945 0.83 -1.9
214,849 + +0.4
214,849 + -1.0

Or see this region's nucleotide sequence