Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00455

Experiment: 30_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00450 and AMB_RS00455 overlap by 52 nucleotidesAMB_RS00455 and AMB_RS00460 overlap by 4 nucleotidesAMB_RS00460 and AMB_RS00465 are separated by 10 nucleotides AMB_RS00450: AMB_RS00450 - radical SAM protein, at 99,030 to 100,166 _RS00450 AMB_RS00455: AMB_RS00455 - KR domain-containing protein, at 100,115 to 100,942 _RS00455 AMB_RS00460: AMB_RS00460 - acylneuraminate cytidylyltransferase family protein, at 100,939 to 101,616 _RS00460 AMB_RS00465: AMB_RS00465 - CBS domain-containing protein, at 101,627 to 103,873 _RS00465 Position (kb) 100 101Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 99.237 kb on + strand, within AMB_RS00450at 99.237 kb on + strand, within AMB_RS00450at 99.238 kb on - strand, within AMB_RS00450at 99.378 kb on + strand, within AMB_RS00450at 99.378 kb on + strand, within AMB_RS00450at 99.378 kb on + strand, within AMB_RS00450at 99.378 kb on + strand, within AMB_RS00450at 99.379 kb on - strand, within AMB_RS00450at 99.379 kb on - strand, within AMB_RS00450at 99.379 kb on - strand, within AMB_RS00450at 99.380 kb on + strand, within AMB_RS00450at 99.380 kb on + strand, within AMB_RS00450at 99.394 kb on - strand, within AMB_RS00450at 99.394 kb on - strand, within AMB_RS00450at 99.405 kb on + strand, within AMB_RS00450at 99.432 kb on + strand, within AMB_RS00450at 99.432 kb on + strand, within AMB_RS00450at 99.432 kb on + strand, within AMB_RS00450at 99.432 kb on + strand, within AMB_RS00450at 99.432 kb on + strand, within AMB_RS00450at 99.432 kb on + strand, within AMB_RS00450at 99.433 kb on - strand, within AMB_RS00450at 99.433 kb on - strand, within AMB_RS00450at 99.438 kb on + strand, within AMB_RS00450at 99.438 kb on + strand, within AMB_RS00450at 99.438 kb on + strand, within AMB_RS00450at 99.445 kb on + strand, within AMB_RS00450at 99.543 kb on + strand, within AMB_RS00450at 99.543 kb on + strand, within AMB_RS00450at 99.543 kb on + strand, within AMB_RS00450at 99.543 kb on + strand, within AMB_RS00450at 99.544 kb on - strand, within AMB_RS00450at 99.544 kb on - strand, within AMB_RS00450at 99.846 kb on + strand, within AMB_RS00450at 99.873 kb on + strand, within AMB_RS00450at 99.924 kb on + strand, within AMB_RS00450at 99.924 kb on + strand, within AMB_RS00450at 99.924 kb on + strand, within AMB_RS00450at 99.993 kb on + strand, within AMB_RS00450at 99.993 kb on + strand, within AMB_RS00450at 99.993 kb on + strand, within AMB_RS00450at 99.993 kb on + strand, within AMB_RS00450at 99.993 kb on + strand, within AMB_RS00450at 99.993 kb on + strand, within AMB_RS00450at 99.994 kb on - strand, within AMB_RS00450at 99.994 kb on - strand, within AMB_RS00450at 99.994 kb on - strand, within AMB_RS00450at 99.994 kb on - strand, within AMB_RS00450at 99.994 kb on - strand, within AMB_RS00450at 100.062 kb on + strandat 100.062 kb on + strandat 100.062 kb on + strandat 100.062 kb on + strandat 100.062 kb on + strandat 100.063 kb on - strandat 100.112 kb on + strandat 100.112 kb on + strandat 100.113 kb on - strandat 100.113 kb on - strandat 100.490 kb on + strand, within AMB_RS00455at 100.490 kb on + strand, within AMB_RS00455at 100.490 kb on + strand, within AMB_RS00455at 100.610 kb on + strand, within AMB_RS00455at 100.640 kb on + strand, within AMB_RS00455at 100.640 kb on + strand, within AMB_RS00455at 100.640 kb on + strand, within AMB_RS00455at 100.640 kb on + strand, within AMB_RS00455at 100.640 kb on + strand, within AMB_RS00455at 100.640 kb on + strand, within AMB_RS00455at 100.640 kb on + strand, within AMB_RS00455at 100.640 kb on + strand, within AMB_RS00455at 100.640 kb on + strand, within AMB_RS00455at 100.673 kb on + strand, within AMB_RS00455at 100.724 kb on + strand, within AMB_RS00455

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_2
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99,237 + AMB_RS00450 0.18 +0.1
99,237 + AMB_RS00450 0.18 -0.5
99,238 - AMB_RS00450 0.18 +0.8
99,378 + AMB_RS00450 0.31 -0.7
99,378 + AMB_RS00450 0.31 -0.9
99,378 + AMB_RS00450 0.31 -0.2
99,378 + AMB_RS00450 0.31 +0.1
99,379 - AMB_RS00450 0.31 -2.0
99,379 - AMB_RS00450 0.31 -2.2
99,379 - AMB_RS00450 0.31 -2.8
99,380 + AMB_RS00450 0.31 -1.4
99,380 + AMB_RS00450 0.31 -1.3
99,394 - AMB_RS00450 0.32 +1.8
99,394 - AMB_RS00450 0.32 -0.8
99,405 + AMB_RS00450 0.33 -1.5
99,432 + AMB_RS00450 0.35 +0.6
99,432 + AMB_RS00450 0.35 -0.3
99,432 + AMB_RS00450 0.35 -1.4
99,432 + AMB_RS00450 0.35 +0.2
99,432 + AMB_RS00450 0.35 -0.5
99,432 + AMB_RS00450 0.35 -0.1
99,433 - AMB_RS00450 0.35 +1.8
99,433 - AMB_RS00450 0.35 -2.2
99,438 + AMB_RS00450 0.36 -0.3
99,438 + AMB_RS00450 0.36 -0.1
99,438 + AMB_RS00450 0.36 +1.4
99,445 + AMB_RS00450 0.36 +0.8
99,543 + AMB_RS00450 0.45 -0.6
99,543 + AMB_RS00450 0.45 -1.2
99,543 + AMB_RS00450 0.45 -0.5
99,543 + AMB_RS00450 0.45 +0.1
99,544 - AMB_RS00450 0.45 -0.5
99,544 - AMB_RS00450 0.45 -4.0
99,846 + AMB_RS00450 0.72 -1.2
99,873 + AMB_RS00450 0.74 +0.7
99,924 + AMB_RS00450 0.79 -0.5
99,924 + AMB_RS00450 0.79 +0.8
99,924 + AMB_RS00450 0.79 -2.7
99,993 + AMB_RS00450 0.85 -2.0
99,993 + AMB_RS00450 0.85 -2.4
99,993 + AMB_RS00450 0.85 +0.4
99,993 + AMB_RS00450 0.85 -0.5
99,993 + AMB_RS00450 0.85 -1.2
99,993 + AMB_RS00450 0.85 +0.8
99,994 - AMB_RS00450 0.85 +0.2
99,994 - AMB_RS00450 0.85 -0.8
99,994 - AMB_RS00450 0.85 -3.6
99,994 - AMB_RS00450 0.85 -3.9
99,994 - AMB_RS00450 0.85 -4.8
100,062 + -0.7
100,062 + -0.8
100,062 + +0.3
100,062 + +0.2
100,062 + +0.4
100,063 - -1.2
100,112 + -1.0
100,112 + -0.5
100,113 - -1.4
100,113 - -0.5
100,490 + AMB_RS00455 0.45 -1.2
100,490 + AMB_RS00455 0.45 -4.3
100,490 + AMB_RS00455 0.45 -4.5
100,610 + AMB_RS00455 0.60 +0.8
100,640 + AMB_RS00455 0.63 -3.9
100,640 + AMB_RS00455 0.63 -3.9
100,640 + AMB_RS00455 0.63 -1.1
100,640 + AMB_RS00455 0.63 +1.8
100,640 + AMB_RS00455 0.63 -4.0
100,640 + AMB_RS00455 0.63 -2.3
100,640 + AMB_RS00455 0.63 -1.5
100,640 + AMB_RS00455 0.63 -2.5
100,640 + AMB_RS00455 0.63 +0.8
100,673 + AMB_RS00455 0.67 -3.5
100,724 + AMB_RS00455 0.74 -0.5

Or see this region's nucleotide sequence