Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00440

Experiment: 30_an_nonmag_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00435 and AMB_RS00440 are separated by 50 nucleotidesAMB_RS00440 and AMB_RS00445 overlap by 1 nucleotidesAMB_RS00445 and AMB_RS00450 are separated by 53 nucleotides AMB_RS00435: AMB_RS00435 - B12-binding domain-containing radical SAM protein, at 94,326 to 96,215 _RS00435 AMB_RS00440: AMB_RS00440 - hypothetical protein, at 96,266 to 98,272 _RS00440 AMB_RS00445: AMB_RS00445 - acylneuraminate cytidylyltransferase family protein, at 98,272 to 98,976 _RS00445 AMB_RS00450: AMB_RS00450 - radical SAM protein, at 99,030 to 100,166 _RS00450 Position (kb) 96 97 98 99Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 95.290 kb on - strand, within AMB_RS00435at 95.290 kb on - strand, within AMB_RS00435at 95.523 kb on + strand, within AMB_RS00435at 95.523 kb on + strand, within AMB_RS00435at 95.523 kb on + strand, within AMB_RS00435at 95.524 kb on - strand, within AMB_RS00435at 95.524 kb on - strand, within AMB_RS00435at 95.524 kb on - strand, within AMB_RS00435at 95.524 kb on - strand, within AMB_RS00435at 95.553 kb on + strand, within AMB_RS00435at 95.553 kb on + strand, within AMB_RS00435at 95.554 kb on - strand, within AMB_RS00435at 95.554 kb on - strand, within AMB_RS00435at 95.579 kb on + strand, within AMB_RS00435at 95.579 kb on + strand, within AMB_RS00435at 95.579 kb on + strand, within AMB_RS00435at 95.579 kb on + strand, within AMB_RS00435at 95.580 kb on - strand, within AMB_RS00435at 95.611 kb on - strand, within AMB_RS00435at 95.611 kb on - strand, within AMB_RS00435at 95.611 kb on - strand, within AMB_RS00435at 95.611 kb on - strand, within AMB_RS00435at 95.611 kb on - strand, within AMB_RS00435at 95.611 kb on - strand, within AMB_RS00435at 95.611 kb on - strand, within AMB_RS00435at 95.727 kb on + strand, within AMB_RS00435at 95.727 kb on + strand, within AMB_RS00435at 95.728 kb on - strand, within AMB_RS00435at 95.728 kb on - strand, within AMB_RS00435at 95.728 kb on - strand, within AMB_RS00435at 95.733 kb on + strand, within AMB_RS00435at 95.733 kb on + strand, within AMB_RS00435at 95.733 kb on + strand, within AMB_RS00435at 95.733 kb on + strand, within AMB_RS00435at 95.734 kb on - strand, within AMB_RS00435at 95.734 kb on - strand, within AMB_RS00435at 95.734 kb on - strand, within AMB_RS00435at 95.734 kb on - strand, within AMB_RS00435at 95.734 kb on - strand, within AMB_RS00435at 95.734 kb on - strand, within AMB_RS00435at 95.734 kb on - strand, within AMB_RS00435at 95.734 kb on - strand, within AMB_RS00435at 95.761 kb on - strand, within AMB_RS00435at 95.791 kb on - strand, within AMB_RS00435at 95.796 kb on - strand, within AMB_RS00435at 95.856 kb on - strand, within AMB_RS00435at 95.978 kb on + strand, within AMB_RS00435at 95.981 kb on - strand, within AMB_RS00435at 96.126 kb on + strandat 96.128 kb on + strandat 96.128 kb on + strandat 96.128 kb on + strandat 96.128 kb on + strandat 96.128 kb on + strandat 96.129 kb on - strandat 96.129 kb on - strandat 96.129 kb on - strandat 96.129 kb on - strandat 96.140 kb on + strandat 96.141 kb on - strandat 96.213 kb on + strandat 98.243 kb on + strandat 98.965 kb on - strandat 98.965 kb on - strandat 99.087 kb on + strandat 99.087 kb on + strandat 99.087 kb on + strandat 99.087 kb on + strandat 99.087 kb on + strandat 99.088 kb on - strandat 99.088 kb on - strandat 99.088 kb on - strandat 99.237 kb on + strand, within AMB_RS00450at 99.237 kb on + strand, within AMB_RS00450at 99.238 kb on - strand, within AMB_RS00450

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_2
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95,290 - AMB_RS00435 0.51 -3.2
95,290 - AMB_RS00435 0.51 -0.2
95,523 + AMB_RS00435 0.63 -0.2
95,523 + AMB_RS00435 0.63 -0.5
95,523 + AMB_RS00435 0.63 -0.8
95,524 - AMB_RS00435 0.63 -2.6
95,524 - AMB_RS00435 0.63 +0.2
95,524 - AMB_RS00435 0.63 -2.1
95,524 - AMB_RS00435 0.63 -1.8
95,553 + AMB_RS00435 0.65 +0.2
95,553 + AMB_RS00435 0.65 -1.0
95,554 - AMB_RS00435 0.65 -0.4
95,554 - AMB_RS00435 0.65 -2.7
95,579 + AMB_RS00435 0.66 -0.9
95,579 + AMB_RS00435 0.66 -1.2
95,579 + AMB_RS00435 0.66 -1.5
95,579 + AMB_RS00435 0.66 -0.8
95,580 - AMB_RS00435 0.66 +0.2
95,611 - AMB_RS00435 0.68 -1.7
95,611 - AMB_RS00435 0.68 +0.2
95,611 - AMB_RS00435 0.68 -4.6
95,611 - AMB_RS00435 0.68 -4.1
95,611 - AMB_RS00435 0.68 -0.8
95,611 - AMB_RS00435 0.68 -1.2
95,611 - AMB_RS00435 0.68 -1.9
95,727 + AMB_RS00435 0.74 +0.8
95,727 + AMB_RS00435 0.74 -1.2
95,728 - AMB_RS00435 0.74 -1.4
95,728 - AMB_RS00435 0.74 -3.6
95,728 - AMB_RS00435 0.74 -3.1
95,733 + AMB_RS00435 0.74 -0.8
95,733 + AMB_RS00435 0.74 -1.0
95,733 + AMB_RS00435 0.74 -1.3
95,733 + AMB_RS00435 0.74 -1.5
95,734 - AMB_RS00435 0.74 +0.2
95,734 - AMB_RS00435 0.74 -1.8
95,734 - AMB_RS00435 0.74 -2.1
95,734 - AMB_RS00435 0.74 -2.3
95,734 - AMB_RS00435 0.74 -2.7
95,734 - AMB_RS00435 0.74 -2.7
95,734 - AMB_RS00435 0.74 -1.2
95,734 - AMB_RS00435 0.74 -1.5
95,761 - AMB_RS00435 0.76 -1.8
95,791 - AMB_RS00435 0.78 -1.2
95,796 - AMB_RS00435 0.78 -1.9
95,856 - AMB_RS00435 0.81 -4.3
95,978 + AMB_RS00435 0.87 -0.6
95,981 - AMB_RS00435 0.88 -2.1
96,126 + -0.5
96,128 + -0.7
96,128 + -2.5
96,128 + -0.4
96,128 + -0.5
96,128 + -0.8
96,129 - -4.3
96,129 - -1.5
96,129 - -1.0
96,129 - +0.8
96,140 + -2.5
96,141 - -2.9
96,213 + -0.3
98,243 + +0.8
98,965 - -1.0
98,965 - -0.9
99,087 + -0.6
99,087 + -0.6
99,087 + -2.1
99,087 + -0.7
99,087 + -0.8
99,088 - -2.7
99,088 - -1.2
99,088 - +0.2
99,237 + AMB_RS00450 0.18 +0.1
99,237 + AMB_RS00450 0.18 -0.5
99,238 - AMB_RS00450 0.18 +0.8

Or see this region's nucleotide sequence