Experiment: 30_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00420 and AMB_RS23090 overlap by 4 nucleotides AMB_RS23090 and AMB_RS00430 overlap by 4 nucleotides AMB_RS00430 and AMB_RS00435 are separated by 97 nucleotides
AMB_RS00420: AMB_RS00420 - hypothetical protein, at 91,177 to 92,289
_RS00420
AMB_RS23090: AMB_RS23090 - NAD(P)-dependent oxidoreductase, at 92,286 to 93,182
_RS23090
AMB_RS00430: AMB_RS00430 - CBS domain-containing protein, at 93,179 to 94,228
_RS00430
AMB_RS00435: AMB_RS00435 - B12-binding domain-containing radical SAM protein, at 94,326 to 96,215
_RS00435
Position (kb) 93
94
95 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 92.679 kb on + strand, within AMB_RS23090 at 92.679 kb on + strand, within AMB_RS23090 at 92.679 kb on + strand, within AMB_RS23090 at 92.679 kb on + strand, within AMB_RS23090 at 92.679 kb on + strand, within AMB_RS23090 at 92.780 kb on + strand, within AMB_RS23090 at 92.780 kb on + strand, within AMB_RS23090 at 94.334 kb on + strand at 94.334 kb on + strand at 94.334 kb on + strand at 94.334 kb on + strand at 94.334 kb on + strand at 94.335 kb on - strand at 94.335 kb on - strand at 94.346 kb on + strand at 94.346 kb on + strand at 94.347 kb on - strand at 94.446 kb on + strand at 94.447 kb on - strand at 94.447 kb on - strand at 94.447 kb on - strand at 94.447 kb on - strand at 94.473 kb on + strand at 94.554 kb on + strand, within AMB_RS00435 at 94.554 kb on + strand, within AMB_RS00435 at 94.554 kb on + strand, within AMB_RS00435 at 94.554 kb on + strand, within AMB_RS00435 at 94.555 kb on - strand, within AMB_RS00435 at 94.555 kb on - strand, within AMB_RS00435 at 94.555 kb on - strand, within AMB_RS00435 at 94.555 kb on - strand, within AMB_RS00435 at 94.836 kb on + strand, within AMB_RS00435 at 94.836 kb on + strand, within AMB_RS00435 at 94.836 kb on + strand, within AMB_RS00435 at 94.836 kb on + strand, within AMB_RS00435 at 94.836 kb on + strand, within AMB_RS00435 at 94.836 kb on + strand, within AMB_RS00435 at 94.837 kb on - strand, within AMB_RS00435 at 94.837 kb on - strand, within AMB_RS00435 at 94.837 kb on - strand, within AMB_RS00435 at 94.837 kb on - strand, within AMB_RS00435 at 94.842 kb on + strand, within AMB_RS00435 at 94.843 kb on - strand, within AMB_RS00435 at 94.843 kb on - strand, within AMB_RS00435 at 94.843 kb on - strand, within AMB_RS00435 at 94.887 kb on + strand, within AMB_RS00435 at 94.887 kb on + strand, within AMB_RS00435 at 94.887 kb on + strand, within AMB_RS00435 at 94.887 kb on + strand, within AMB_RS00435 at 94.887 kb on + strand, within AMB_RS00435 at 94.887 kb on + strand, within AMB_RS00435 at 94.887 kb on + strand, within AMB_RS00435 at 94.887 kb on + strand, within AMB_RS00435 at 94.887 kb on + strand, within AMB_RS00435 at 94.887 kb on + strand, within AMB_RS00435 at 94.888 kb on - strand, within AMB_RS00435 at 94.888 kb on - strand, within AMB_RS00435 at 94.888 kb on - strand, within AMB_RS00435 at 94.888 kb on - strand, within AMB_RS00435 at 94.888 kb on - strand, within AMB_RS00435 at 94.888 kb on - strand, within AMB_RS00435 at 94.888 kb on - strand, within AMB_RS00435 at 94.889 kb on + strand, within AMB_RS00435 at 94.889 kb on + strand, within AMB_RS00435 at 94.889 kb on + strand, within AMB_RS00435 at 94.890 kb on - strand, within AMB_RS00435 at 94.890 kb on - strand, within AMB_RS00435 at 94.890 kb on - strand, within AMB_RS00435 at 94.890 kb on - strand, within AMB_RS00435 at 95.000 kb on + strand, within AMB_RS00435 at 95.055 kb on + strand, within AMB_RS00435 at 95.055 kb on + strand, within AMB_RS00435 at 95.055 kb on + strand, within AMB_RS00435 at 95.055 kb on + strand, within AMB_RS00435 at 95.056 kb on - strand, within AMB_RS00435 at 95.056 kb on - strand, within AMB_RS00435 at 95.056 kb on - strand, within AMB_RS00435 at 95.056 kb on - strand, within AMB_RS00435 at 95.056 kb on - strand, within AMB_RS00435 at 95.056 kb on - strand, within AMB_RS00435 at 95.056 kb on - strand, within AMB_RS00435 at 95.057 kb on + strand, within AMB_RS00435 at 95.058 kb on - strand, within AMB_RS00435 at 95.058 kb on - strand, within AMB_RS00435 at 95.058 kb on - strand, within AMB_RS00435 at 95.058 kb on - strand, within AMB_RS00435 at 95.058 kb on - strand, within AMB_RS00435 at 95.058 kb on - strand, within AMB_RS00435
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_2 remove 92,679 + AMB_RS23090 0.44 -1.1 92,679 + AMB_RS23090 0.44 -2.2 92,679 + AMB_RS23090 0.44 +1.0 92,679 + AMB_RS23090 0.44 -0.6 92,679 + AMB_RS23090 0.44 -1.8 92,780 + AMB_RS23090 0.55 -0.9 92,780 + AMB_RS23090 0.55 -1.9 94,334 + -1.2 94,334 + -0.8 94,334 + -1.5 94,334 + -1.7 94,334 + -0.2 94,335 - -0.5 94,335 - -1.5 94,346 + -2.4 94,346 + -0.8 94,347 - -3.2 94,446 + -1.8 94,447 - -0.8 94,447 - -2.8 94,447 - -4.7 94,447 - -0.1 94,473 + -3.1 94,554 + AMB_RS00435 0.12 -1.3 94,554 + AMB_RS00435 0.12 -1.8 94,554 + AMB_RS00435 0.12 -1.8 94,554 + AMB_RS00435 0.12 -1.4 94,555 - AMB_RS00435 0.12 -3.1 94,555 - AMB_RS00435 0.12 -1.0 94,555 - AMB_RS00435 0.12 +0.8 94,555 - AMB_RS00435 0.12 -1.2 94,836 + AMB_RS00435 0.27 +1.3 94,836 + AMB_RS00435 0.27 -1.4 94,836 + AMB_RS00435 0.27 +0.2 94,836 + AMB_RS00435 0.27 -2.3 94,836 + AMB_RS00435 0.27 +1.0 94,836 + AMB_RS00435 0.27 +0.8 94,837 - AMB_RS00435 0.27 -1.8 94,837 - AMB_RS00435 0.27 -1.7 94,837 - AMB_RS00435 0.27 -3.4 94,837 - AMB_RS00435 0.27 -3.9 94,842 + AMB_RS00435 0.27 -2.3 94,843 - AMB_RS00435 0.27 -2.5 94,843 - AMB_RS00435 0.27 -2.4 94,843 - AMB_RS00435 0.27 +0.8 94,887 + AMB_RS00435 0.30 +2.6 94,887 + AMB_RS00435 0.30 -0.6 94,887 + AMB_RS00435 0.30 -4.4 94,887 + AMB_RS00435 0.30 -1.6 94,887 + AMB_RS00435 0.30 -1.1 94,887 + AMB_RS00435 0.30 -0.8 94,887 + AMB_RS00435 0.30 -1.9 94,887 + AMB_RS00435 0.30 +0.8 94,887 + AMB_RS00435 0.30 -1.2 94,887 + AMB_RS00435 0.30 -0.8 94,888 - AMB_RS00435 0.30 -2.5 94,888 - AMB_RS00435 0.30 -1.4 94,888 - AMB_RS00435 0.30 -0.2 94,888 - AMB_RS00435 0.30 -0.8 94,888 - AMB_RS00435 0.30 -4.4 94,888 - AMB_RS00435 0.30 -1.3 94,888 - AMB_RS00435 0.30 +1.8 94,889 + AMB_RS00435 0.30 -1.4 94,889 + AMB_RS00435 0.30 +0.2 94,889 + AMB_RS00435 0.30 -1.2 94,890 - AMB_RS00435 0.30 +1.8 94,890 - AMB_RS00435 0.30 -1.0 94,890 - AMB_RS00435 0.30 -1.8 94,890 - AMB_RS00435 0.30 +1.8 95,000 + AMB_RS00435 0.36 -0.5 95,055 + AMB_RS00435 0.39 -3.0 95,055 + AMB_RS00435 0.39 -1.9 95,055 + AMB_RS00435 0.39 -1.6 95,055 + AMB_RS00435 0.39 -0.5 95,056 - AMB_RS00435 0.39 -2.3 95,056 - AMB_RS00435 0.39 -0.2 95,056 - AMB_RS00435 0.39 -2.4 95,056 - AMB_RS00435 0.39 -2.6 95,056 - AMB_RS00435 0.39 +1.8 95,056 - AMB_RS00435 0.39 -1.2 95,056 - AMB_RS00435 0.39 -2.2 95,057 + AMB_RS00435 0.39 -1.2 95,058 - AMB_RS00435 0.39 -2.1 95,058 - AMB_RS00435 0.39 -2.6 95,058 - AMB_RS00435 0.39 -2.0 95,058 - AMB_RS00435 0.39 -0.5 95,058 - AMB_RS00435 0.39 -3.9 95,058 - AMB_RS00435 0.39 -2.1
Or see this region's nucleotide sequence