Experiment: 30_an_nonmag_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS00100 and AMB_RS00105 are separated by 169 nucleotides AMB_RS00105 and AMB_RS00110 are separated by 162 nucleotides AMB_RS00110 and AMB_RS00115 are separated by 24 nucleotides
AMB_RS00100: AMB_RS00100 - exodeoxyribonuclease III, at 18,552 to 19,343
_RS00100
AMB_RS00105: AMB_RS00105 - DNA-binding response regulator, at 19,513 to 20,154
_RS00105
AMB_RS00110: AMB_RS00110 - GTP cyclohydrolase II, at 20,317 to 21,429
_RS00110
AMB_RS00115: AMB_RS00115 - hypothetical protein, at 21,454 to 22,608
_RS00115
Position (kb) 20
21
22 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 19.342 kb on - strand at 19.379 kb on - strand at 20.179 kb on + strand at 20.179 kb on + strand at 20.180 kb on - strand at 20.180 kb on - strand at 20.181 kb on + strand at 20.181 kb on + strand at 20.182 kb on - strand at 20.182 kb on - strand at 20.182 kb on - strand at 20.182 kb on - strand at 20.182 kb on - strand at 20.282 kb on + strand at 20.282 kb on + strand at 20.282 kb on + strand at 20.282 kb on + strand at 21.567 kb on + strand at 21.567 kb on + strand at 21.568 kb on - strand at 21.592 kb on + strand, within AMB_RS00115 at 21.681 kb on + strand, within AMB_RS00115 at 21.681 kb on + strand, within AMB_RS00115 at 21.681 kb on + strand, within AMB_RS00115 at 21.682 kb on - strand, within AMB_RS00115 at 21.799 kb on + strand, within AMB_RS00115 at 21.800 kb on - strand, within AMB_RS00115 at 21.820 kb on - strand, within AMB_RS00115 at 21.830 kb on + strand, within AMB_RS00115 at 21.831 kb on - strand, within AMB_RS00115 at 21.831 kb on - strand, within AMB_RS00115
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_2 remove 19,342 - -0.2 19,379 - -0.5 20,179 + +0.2 20,179 + -1.7 20,180 - -1.2 20,180 - +0.8 20,181 + +0.8 20,181 + -0.1 20,182 - -2.3 20,182 - -1.8 20,182 - -1.0 20,182 - -1.0 20,182 - -2.6 20,282 + -0.6 20,282 + -1.4 20,282 + -0.2 20,282 + +0.8 21,567 + -2.4 21,567 + -1.2 21,568 - -2.4 21,592 + AMB_RS00115 0.12 +0.2 21,681 + AMB_RS00115 0.20 -3.3 21,681 + AMB_RS00115 0.20 -1.5 21,681 + AMB_RS00115 0.20 +1.8 21,682 - AMB_RS00115 0.20 -0.2 21,799 + AMB_RS00115 0.30 -1.5 21,800 - AMB_RS00115 0.30 +0.8 21,820 - AMB_RS00115 0.32 -0.6 21,830 + AMB_RS00115 0.33 -2.5 21,831 - AMB_RS00115 0.33 +0.2 21,831 - AMB_RS00115 0.33 +0.3
Or see this region's nucleotide sequence