Strain Fitness in Escherichia coli BW25113 around b0967
Experiment: Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Dimethyl Sulfoxide 7.5 vol% |
---|---|---|---|---|---|
remove | |||||
1,027,060 | + | +1.6 | |||
1,027,060 | + | +0.8 | |||
1,027,085 | + | +0.4 | |||
1,027,145 | + | -0.4 | |||
1,027,153 | - | +0.2 | |||
1,027,293 | - | b0965 | b0965 | 0.30 | +0.8 |
1,027,466 | + | b0965 | b0965 | 0.72 | +0.2 |
1,027,570 | - | +0.1 | |||
1,027,626 | - | +0.0 | |||
1,027,633 | - | +0.8 | |||
1,027,658 | - | -0.0 | |||
1,027,667 | + | hspQ | b0966 | 0.13 | -0.8 |
1,027,674 | - | hspQ | b0966 | 0.15 | -0.1 |
1,027,675 | - | hspQ | b0966 | 0.15 | +0.6 |
1,027,695 | + | hspQ | b0966 | 0.21 | -0.1 |
1,027,747 | + | hspQ | b0966 | 0.38 | -1.2 |
1,027,747 | + | hspQ | b0966 | 0.38 | +0.2 |
1,027,755 | - | hspQ | b0966 | 0.40 | +1.1 |
1,027,810 | - | hspQ | b0966 | 0.58 | -0.4 |
1,027,810 | - | hspQ | b0966 | 0.58 | -0.3 |
1,027,865 | - | hspQ | b0966 | 0.75 | -0.3 |
1,027,865 | - | hspQ | b0966 | 0.75 | +0.1 |
1,027,885 | + | hspQ | b0966 | 0.81 | +0.1 |
1,028,057 | - | +0.2 | |||
1,028,120 | + | -2.2 | |||
1,028,328 | + | yccW | b0967 | 0.27 | +0.8 |
1,028,328 | + | yccW | b0967 | 0.27 | +0.5 |
1,028,373 | - | yccW | b0967 | 0.31 | -0.3 |
1,028,378 | - | yccW | b0967 | 0.32 | +1.6 |
1,028,378 | - | yccW | b0967 | 0.32 | -0.8 |
1,028,425 | - | yccW | b0967 | 0.36 | -0.0 |
1,028,478 | + | yccW | b0967 | 0.40 | -0.5 |
1,028,509 | - | yccW | b0967 | 0.43 | +0.4 |
1,028,579 | - | yccW | b0967 | 0.48 | +0.6 |
1,028,579 | - | yccW | b0967 | 0.48 | +1.1 |
1,028,619 | + | yccW | b0967 | 0.52 | +1.2 |
1,028,685 | - | yccW | b0967 | 0.57 | +1.0 |
1,028,796 | + | yccW | b0967 | 0.67 | -0.2 |
1,028,796 | + | yccW | b0967 | 0.67 | -1.2 |
1,028,841 | + | yccW | b0967 | 0.70 | +1.2 |
1,028,846 | + | yccW | b0967 | 0.71 | +0.8 |
1,028,901 | - | yccW | b0967 | 0.75 | -0.7 |
1,028,975 | + | yccW | b0967 | 0.82 | +0.3 |
1,028,984 | - | yccW | b0967 | 0.82 | +1.5 |
1,029,155 | - | -0.4 | |||
1,029,171 | - | +2.8 | |||
1,029,269 | + | +0.8 | |||
1,029,273 | - | +0.8 | |||
1,029,273 | - | +1.8 | |||
1,029,279 | - | -0.5 | |||
1,029,322 | - | yccX | b0968 | 0.13 | -0.2 |
1,029,322 | - | yccX | b0968 | 0.13 | +0.8 |
1,029,343 | + | yccX | b0968 | 0.20 | +1.0 |
1,029,348 | + | yccX | b0968 | 0.22 | +0.3 |
1,029,477 | - | yccX | b0968 | 0.68 | +0.4 |
1,029,477 | - | yccX | b0968 | 0.68 | +0.1 |
1,029,501 | + | yccX | b0968 | 0.77 | +0.7 |
1,029,529 | - | yccX | b0968 | 0.87 | +1.6 |
1,029,529 | - | yccX | b0968 | 0.87 | +0.1 |
1,029,860 | + | +0.8 | |||
1,029,960 | + | +0.6 | |||
1,029,980 | + | +0.3 | |||
1,029,980 | + | -0.4 | |||
1,030,084 | + | yccA | b0970 | 0.15 | +0.8 |
1,030,154 | + | yccA | b0970 | 0.26 | +0.1 |
Or see this region's nucleotide sequence