Experiment: Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycbO and ssuE overlap by 8 nucleotides ssuE and ycbQ are separated by 355 nucleotides ycbQ and ycbR are separated by 82 nucleotides ycbR and ycbS are separated by 24 nucleotides
b0936: ycbO - orf, hypothetical protein (VIMSS), at 995,208 to 996,167
ycbO
b0937: ssuE - NAD(P)H-dependent FMN reductase (NCBI), at 996,160 to 996,735
ssuE
b0938: ycbQ - putative fimbrial-like protein (VIMSS), at 997,091 to 997,630
ycbQ
b0939: ycbR - predicted periplasmic pilin chaperone (NCBI), at 997,713 to 998,414
ycbR
b0940: ycbS - predicted outer membrane usher protein (NCBI), at 998,439 to 1,001,039
ycbS
Position (kb) 997
998 Strain fitness (log2 ratio) -2
-1
0
1
2 at 996.185 kb on + strand at 996.207 kb on - strand at 996.267 kb on + strand, within ssuE at 996.350 kb on - strand, within ssuE at 996.637 kb on + strand, within ssuE at 996.637 kb on + strand, within ssuE at 996.710 kb on + strand at 996.710 kb on + strand at 996.714 kb on + strand at 996.718 kb on - strand at 996.721 kb on + strand at 996.721 kb on + strand at 996.722 kb on - strand at 996.743 kb on + strand at 996.743 kb on + strand at 996.751 kb on - strand at 996.774 kb on + strand at 996.793 kb on + strand at 996.793 kb on + strand at 996.797 kb on + strand at 996.797 kb on + strand at 997.121 kb on + strand at 997.152 kb on - strand, within ycbQ at 997.152 kb on - strand, within ycbQ at 997.191 kb on - strand, within ycbQ at 997.257 kb on + strand, within ycbQ at 997.347 kb on - strand, within ycbQ at 997.347 kb on - strand, within ycbQ at 997.347 kb on - strand, within ycbQ at 997.374 kb on + strand, within ycbQ at 997.390 kb on + strand, within ycbQ at 997.402 kb on + strand, within ycbQ at 997.423 kb on + strand, within ycbQ at 997.423 kb on + strand, within ycbQ at 997.424 kb on + strand, within ycbQ at 997.429 kb on + strand, within ycbQ at 997.454 kb on + strand, within ycbQ at 997.454 kb on + strand, within ycbQ at 997.454 kb on + strand, within ycbQ at 997.454 kb on + strand, within ycbQ at 997.485 kb on - strand, within ycbQ at 997.486 kb on + strand, within ycbQ at 997.486 kb on + strand, within ycbQ at 997.525 kb on + strand, within ycbQ at 997.525 kb on + strand, within ycbQ at 997.545 kb on + strand, within ycbQ at 997.566 kb on + strand, within ycbQ at 997.573 kb on + strand, within ycbQ at 997.573 kb on + strand, within ycbQ at 997.573 kb on + strand, within ycbQ at 997.586 kb on + strand at 997.586 kb on + strand at 997.736 kb on - strand at 997.736 kb on - strand at 997.769 kb on - strand at 997.772 kb on - strand at 997.772 kb on - strand at 997.785 kb on - strand, within ycbR at 997.801 kb on - strand, within ycbR at 997.801 kb on - strand, within ycbR at 997.802 kb on - strand, within ycbR at 997.802 kb on - strand, within ycbR at 997.807 kb on - strand, within ycbR at 997.807 kb on - strand, within ycbR at 997.812 kb on - strand, within ycbR at 997.850 kb on - strand, within ycbR at 997.868 kb on + strand, within ycbR at 997.872 kb on - strand, within ycbR at 997.872 kb on - strand, within ycbR at 997.872 kb on - strand, within ycbR at 997.876 kb on - strand, within ycbR at 997.876 kb on - strand, within ycbR at 997.886 kb on - strand, within ycbR at 997.902 kb on - strand, within ycbR at 997.912 kb on - strand, within ycbR at 997.912 kb on - strand, within ycbR at 997.992 kb on + strand, within ycbR at 998.001 kb on + strand, within ycbR at 998.004 kb on + strand, within ycbR at 998.012 kb on - strand, within ycbR at 998.038 kb on - strand, within ycbR at 998.046 kb on + strand, within ycbR at 998.056 kb on + strand, within ycbR at 998.056 kb on + strand, within ycbR at 998.056 kb on + strand, within ycbR at 998.056 kb on + strand, within ycbR at 998.056 kb on + strand, within ycbR at 998.057 kb on + strand, within ycbR at 998.057 kb on + strand, within ycbR at 998.065 kb on - strand, within ycbR at 998.067 kb on + strand, within ycbR at 998.067 kb on + strand, within ycbR at 998.067 kb on - strand, within ycbR at 998.067 kb on - strand, within ycbR at 998.069 kb on + strand, within ycbR at 998.159 kb on - strand, within ycbR at 998.165 kb on - strand, within ycbR at 998.165 kb on - strand, within ycbR at 998.187 kb on - strand, within ycbR at 998.213 kb on + strand, within ycbR at 998.213 kb on + strand at 998.221 kb on - strand, within ycbR at 998.222 kb on - strand, within ycbR at 998.248 kb on + strand, within ycbR at 998.370 kb on + strand at 998.383 kb on - strand at 998.404 kb on + strand at 998.410 kb on - strand at 998.441 kb on + strand at 998.446 kb on - strand at 998.446 kb on - strand at 998.462 kb on - strand at 998.468 kb on + strand at 998.468 kb on + strand at 998.492 kb on + strand at 998.497 kb on + strand at 998.528 kb on + strand at 998.528 kb on + strand at 998.589 kb on - strand at 998.589 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dimethyl Sulfoxide 7.5 vol% remove 996,185 + +0.1 996,207 - +0.7 996,267 + ssuE b0937 0.19 +0.0 996,350 - ssuE b0937 0.33 -1.2 996,637 + ssuE b0937 0.83 +0.8 996,637 + ssuE b0937 0.83 +2.4 996,710 + -0.2 996,710 + +0.0 996,714 + -1.0 996,718 - +0.1 996,721 + +0.8 996,721 + -0.3 996,722 - +0.5 996,743 + -0.2 996,743 + -0.9 996,751 - -0.8 996,774 + -0.8 996,793 + +0.2 996,793 + +0.4 996,797 + +0.2 996,797 + +0.1 997,121 + -0.3 997,152 - ycbQ b0938 0.11 +0.4 997,152 - ycbQ b0938 0.11 -2.2 997,191 - ycbQ b0938 0.19 -2.0 997,257 + ycbQ b0938 0.31 -0.7 997,347 - ycbQ b0938 0.47 -1.2 997,347 - ycbQ b0938 0.47 -0.2 997,347 - ycbQ b0938 0.47 +0.5 997,374 + ycbQ b0938 0.52 -0.7 997,390 + ycbQ b0938 0.55 +0.2 997,402 + ycbQ b0938 0.58 -0.1 997,423 + ycbQ b0938 0.61 -0.2 997,423 + ycbQ b0938 0.61 -0.5 997,424 + ycbQ b0938 0.62 -0.2 997,429 + ycbQ b0938 0.63 -0.8 997,454 + ycbQ b0938 0.67 -0.2 997,454 + ycbQ b0938 0.67 -0.2 997,454 + ycbQ b0938 0.67 -1.2 997,454 + ycbQ b0938 0.67 +0.4 997,485 - ycbQ b0938 0.73 -1.8 997,486 + ycbQ b0938 0.73 -2.0 997,486 + ycbQ b0938 0.73 -1.2 997,525 + ycbQ b0938 0.80 -0.4 997,525 + ycbQ b0938 0.80 -1.5 997,545 + ycbQ b0938 0.84 -0.1 997,566 + ycbQ b0938 0.88 -0.0 997,573 + ycbQ b0938 0.89 +0.8 997,573 + ycbQ b0938 0.89 -1.0 997,573 + ycbQ b0938 0.89 +0.7 997,586 + +0.8 997,586 + +0.1 997,736 - +0.3 997,736 - +0.2 997,769 - +0.5 997,772 - -0.0 997,772 - +0.2 997,785 - ycbR b0939 0.10 +0.1 997,801 - ycbR b0939 0.13 +0.2 997,801 - ycbR b0939 0.13 +0.5 997,802 - ycbR b0939 0.13 +0.0 997,802 - ycbR b0939 0.13 +0.5 997,807 - ycbR b0939 0.13 +0.4 997,807 - ycbR b0939 0.13 +0.4 997,812 - ycbR b0939 0.14 +0.3 997,850 - ycbR b0939 0.20 -0.4 997,868 + ycbR b0939 0.22 -0.6 997,872 - ycbR b0939 0.23 -0.6 997,872 - ycbR b0939 0.23 +0.2 997,872 - ycbR b0939 0.23 -0.2 997,876 - ycbR b0939 0.23 -0.5 997,876 - ycbR b0939 0.23 +1.0 997,886 - ycbR b0939 0.25 +0.0 997,902 - ycbR b0939 0.27 +0.2 997,912 - ycbR b0939 0.28 +1.0 997,912 - ycbR b0939 0.28 +0.4 997,992 + ycbR b0939 0.40 +0.2 998,001 + ycbR b0939 0.41 -1.0 998,004 + ycbR b0939 0.41 -0.2 998,012 - ycbR b0939 0.43 +0.5 998,038 - ycbR b0939 0.46 -0.9 998,046 + ycbR b0939 0.47 +0.5 998,056 + ycbR b0939 0.49 +0.0 998,056 + ycbR b0939 0.49 -0.0 998,056 + ycbR b0939 0.49 -2.3 998,056 + ycbR b0939 0.49 -0.9 998,056 + ycbR b0939 0.49 +0.4 998,057 + ycbR b0939 0.49 +0.0 998,057 + ycbR b0939 0.49 -0.8 998,065 - ycbR b0939 0.50 +0.2 998,067 + ycbR b0939 0.50 +0.0 998,067 + ycbR b0939 0.50 -0.0 998,067 - ycbR b0939 0.50 +0.4 998,067 - ycbR b0939 0.50 +2.4 998,069 + ycbR b0939 0.51 +0.5 998,159 - ycbR b0939 0.64 -1.3 998,165 - ycbR b0939 0.64 +0.6 998,165 - ycbR b0939 0.64 -0.2 998,187 - ycbR b0939 0.68 +0.6 998,213 + ycbR b0939 0.71 +0.2 998,213 + +1.8 998,221 - ycbR b0939 0.72 +0.6 998,222 - ycbR b0939 0.73 +0.3 998,248 + ycbR b0939 0.76 +0.3 998,370 + +0.8 998,383 - +0.6 998,404 + +0.0 998,410 - -0.8 998,441 + +0.2 998,446 - +1.5 998,446 - +0.8 998,462 - -0.1 998,468 + +0.2 998,468 + -1.3 998,492 + -0.3 998,497 + -0.9 998,528 + +0.7 998,528 + -0.1 998,589 - -0.6 998,589 - -0.8
Or see this region's nucleotide sequence