Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4708

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4707 and PfGW456L13_4708 are separated by 189 nucleotidesPfGW456L13_4708 and PfGW456L13_4709 are separated by 140 nucleotidesPfGW456L13_4709 and PfGW456L13_4710 are separated by 114 nucleotides PfGW456L13_4707 - Translation elongation factor Ts, at 5,246,043 to 5,246,906 _4707 PfGW456L13_4708 - SSU ribosomal protein S2p (SAe), at 5,247,096 to 5,247,833 _4708 PfGW456L13_4709 - hypothetical protein, at 5,247,974 to 5,248,090 _4709 PfGW456L13_4710 - Methionine aminopeptidase (EC 3.4.11.18), at 5,248,205 to 5,248,987 _4710 Position (kb) 5247 5248Strain fitness (log2 ratio) -3 -2 -1 0 1at 5246.986 kb on - strandat 5247.000 kb on - strandat 5247.006 kb on - strandat 5247.098 kb on - strandat 5247.098 kb on - strandat 5247.098 kb on - strandat 5247.098 kb on - strandat 5248.069 kb on + strand, within PfGW456L13_4709at 5248.069 kb on + strand, within PfGW456L13_4709at 5248.069 kb on + strand, within PfGW456L13_4709at 5248.070 kb on - strand, within PfGW456L13_4709at 5248.070 kb on - strand, within PfGW456L13_4709at 5248.070 kb on - strand, within PfGW456L13_4709at 5248.070 kb on - strand, within PfGW456L13_4709at 5248.118 kb on + strandat 5248.118 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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5,246,986 - +0.2
5,247,000 - -2.5
5,247,006 - -0.7
5,247,098 - -1.5
5,247,098 - +0.5
5,247,098 - -1.5
5,247,098 - +0.3
5,248,069 + PfGW456L13_4709 0.81 -2.4
5,248,069 + PfGW456L13_4709 0.81 +1.3
5,248,069 + PfGW456L13_4709 0.81 -2.5
5,248,070 - PfGW456L13_4709 0.82 -1.7
5,248,070 - PfGW456L13_4709 0.82 -2.8
5,248,070 - PfGW456L13_4709 0.82 +0.9
5,248,070 - PfGW456L13_4709 0.82 -0.7
5,248,118 + +0.3
5,248,118 + +1.4

Or see this region's nucleotide sequence