Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2999

Experiment: L-Arabinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose (C)
3,339,292	+				+1.5
3,339,292	+				-2.2
3,339,292	+				+0.2
3,339,292	+				-0.7
3,339,292	+				+1.6
3,339,292	+				+0.3
3,339,292	+				+0.9
3,339,292	+				-0.2
3,339,292	+				+0.0
3,339,292	+				+0.3
3,339,293	-				-2.8
3,339,293	-				-0.7
3,339,293	-				-0.0
3,339,306	+				-1.0
3,339,307	-				+0.8
3,339,307	-				+0.1
3,339,368	+				-2.3
3,339,368	+				+1.3
3,339,368	+				+0.7
3,339,369	-				+0.0
3,339,394	+		PfGW456L13_2997	0.14	-1.1
3,339,462	+		PfGW456L13_2997	0.27	-3.4
3,339,462	+		PfGW456L13_2997	0.27	-0.0
3,339,463	-		PfGW456L13_2997	0.28	-0.2
3,339,463	-		PfGW456L13_2997	0.28	+0.2
3,339,463	-		PfGW456L13_2997	0.28	-0.2
3,339,746	+		PfGW456L13_2997	0.84	-3.6
3,339,871	+				-3.7
3,339,871	+				+0.4
3,339,871	+				+0.6
3,339,871	+				+0.6
3,339,871	+				+1.4
3,339,872	-				+0.8
3,339,875	+				+0.9
3,339,875	+				+0.9
3,339,876	-				+1.1
3,339,914	+				+0.5
3,339,914	+				+1.7
3,339,915	-				+1.5
3,339,915	-				-0.2
3,340,016	+		PfGW456L13_2998	0.55	-2.1
3,340,016	+		PfGW456L13_2998	0.55	-1.4
3,340,016	+		PfGW456L13_2998	0.55	-0.3
3,340,016	+		PfGW456L13_2998	0.55	-0.2
3,340,016	+		PfGW456L13_2998	0.55	-2.5
3,340,017	-		PfGW456L13_2998	0.55	-0.3
3,340,017	-		PfGW456L13_2998	0.55	-0.5
3,340,017	-		PfGW456L13_2998	0.55	-1.0
3,340,019	+		PfGW456L13_2998	0.56	-0.9
3,340,019	+		PfGW456L13_2998	0.56	-3.6
3,340,020	-		PfGW456L13_2998	0.57	+0.1
3,340,020	-		PfGW456L13_2998	0.57	-0.6
3,340,020	-		PfGW456L13_2998	0.57	-1.0
3,340,020	-		PfGW456L13_2998	0.57	-0.0
3,340,022	+		PfGW456L13_2998	0.58	-2.0
3,340,023	-		PfGW456L13_2998	0.58	-0.9
3,340,125	+				+0.8
3,340,126	-				-1.1
3,340,281	-				-1.1
3,340,281	-				-0.8
3,340,281	-				+0.6
3,340,308	+				-0.7
3,340,308	+				+0.2
3,340,309	-				+0.5
3,340,355	+				-1.5
3,340,481	+		PfGW456L13_2999	0.12	+0.0
3,340,565	+		PfGW456L13_2999	0.16	-1.2
3,340,565	+		PfGW456L13_2999	0.16	+1.1
3,340,565	+		PfGW456L13_2999	0.16	+0.8
3,340,565	+		PfGW456L13_2999	0.16	+0.6
3,340,565	+		PfGW456L13_2999	0.16	+0.9
3,340,565	+		PfGW456L13_2999	0.16	+0.3
3,340,565	+		PfGW456L13_2999	0.16	+0.2
3,340,565	+		PfGW456L13_2999	0.16	-0.4
3,340,566	-		PfGW456L13_2999	0.17	+0.2
3,340,566	-		PfGW456L13_2999	0.17	+0.3
3,340,566	-		PfGW456L13_2999	0.17	-1.7
3,340,566	-		PfGW456L13_2999	0.17	+0.8
3,340,652	+		PfGW456L13_2999	0.21	-0.7
3,340,652	+		PfGW456L13_2999	0.21	+0.0
3,340,652	+		PfGW456L13_2999	0.21	-1.2
3,340,653	-				-1.2
3,340,653	-		PfGW456L13_2999	0.22	-0.4
3,340,653	-		PfGW456L13_2999	0.22	-0.7
3,340,685	+		PfGW456L13_2999	0.23	-0.9
3,340,721	+		PfGW456L13_2999	0.25	+1.2
3,340,722	-		PfGW456L13_2999	0.26	-0.3
3,340,722	-		PfGW456L13_2999	0.26	-1.7
3,340,722	-		PfGW456L13_2999	0.26	-1.1
3,340,739	+		PfGW456L13_2999	0.26	+0.1
3,340,739	+		PfGW456L13_2999	0.26	-0.5
3,340,739	+		PfGW456L13_2999	0.26	+1.5
3,340,740	-		PfGW456L13_2999	0.27	-0.6
3,340,740	-		PfGW456L13_2999	0.27	+0.4
3,340,748	+		PfGW456L13_2999	0.27	-0.0
3,340,748	+		PfGW456L13_2999	0.27	+0.7
3,340,749	-		PfGW456L13_2999	0.27	-0.9
3,340,749	-		PfGW456L13_2999	0.27	-1.2
3,340,749	-		PfGW456L13_2999	0.27	+2.7
3,340,835	+		PfGW456L13_2999	0.32	-0.7
3,340,835	+		PfGW456L13_2999	0.32	-1.1
3,340,835	+		PfGW456L13_2999	0.32	-0.5
3,340,836	-		PfGW456L13_2999	0.32	+0.3
3,340,836	-		PfGW456L13_2999	0.32	+0.5
3,340,836	-		PfGW456L13_2999	0.32	-1.0
3,340,967	+		PfGW456L13_2999	0.40	+1.4
3,340,967	+		PfGW456L13_2999	0.40	-0.7
3,341,058	-		PfGW456L13_2999	0.45	-1.2
3,341,058	-		PfGW456L13_2999	0.45	+0.4
3,341,102	+		PfGW456L13_2999	0.47	-0.3
3,341,103	-		PfGW456L13_2999	0.47	+1.0
3,341,162	+		PfGW456L13_2999	0.51	+1.0
3,341,163	-		PfGW456L13_2999	0.51	-1.4
3,341,175	+		PfGW456L13_2999	0.52	-0.7
3,341,249	+		PfGW456L13_2999	0.56	+0.0
3,341,250	-		PfGW456L13_2999	0.56	+0.8
3,341,250	-		PfGW456L13_2999	0.56	+0.4
3,341,573	+		PfGW456L13_2999	0.74	+0.5
3,341,574	-		PfGW456L13_2999	0.75	-3.0
3,341,574	-		PfGW456L13_2999	0.75	+0.3
3,341,574	-		PfGW456L13_2999	0.75	-1.1
3,341,574	-		PfGW456L13_2999	0.75	-1.5
3,341,654	+		PfGW456L13_2999	0.79	+0.0
3,341,654	+		PfGW456L13_2999	0.79	+1.0
3,341,655	-		PfGW456L13_2999	0.79	+0.4
3,341,666	+		PfGW456L13_2999	0.80	-0.3
3,341,666	+		PfGW456L13_2999	0.80	+1.2
3,341,666	+		PfGW456L13_2999	0.80	+0.8
3,341,667	-		PfGW456L13_2999	0.80	+2.8
3,341,667	-		PfGW456L13_2999	0.80	+1.5
3,341,667	-		PfGW456L13_2999	0.80	+0.7
3,341,667	-		PfGW456L13_2999	0.80	+0.3
3,341,735	+		PfGW456L13_2999	0.84	+0.6
3,341,735	+		PfGW456L13_2999	0.84	-0.6
3,341,735	+		PfGW456L13_2999	0.84	-1.0
3,341,736	-		PfGW456L13_2999	0.84	-0.0
3,341,736	-		PfGW456L13_2999	0.84	-1.5
3,341,747	+		PfGW456L13_2999	0.85	+0.3
3,341,779	+		PfGW456L13_2999	0.86	+2.2
3,341,779	+		PfGW456L13_2999	0.86	-1.9
3,341,779	+		PfGW456L13_2999	0.86	+1.4
3,341,780	-		PfGW456L13_2999	0.86	-1.2
3,341,780	-		PfGW456L13_2999	0.86	-2.2
3,341,911	+				+1.3
3,341,911	+				-1.7
3,341,911	+				+1.3
3,341,911	+				-0.2
3,341,911	+				-1.7
3,341,912	-				-0.8
3,341,912	-				-0.4
3,341,912	-				+1.7
3,341,912	-				-0.3
3,341,944	+				-1.4
3,341,944	+				-2.3
3,341,945	-				-1.4
3,341,945	-				-0.5
3,342,061	-				-1.9
3,342,102	+				-3.4
3,342,102	+				+0.3
3,342,102	+				-1.5
3,342,102	+				-1.5
3,342,103	-				+0.0
3,342,110	+				+0.4
3,342,110	+				+0.3
3,342,356	+		PfGW456L13_3000	0.78	-2.2
3,342,356	+		PfGW456L13_3000	0.78	-0.9
3,342,381	+				-1.5
3,342,381	+				+0.9
3,342,381	+				+1.5
3,342,382	-				-2.9
3,342,385	+				+2.1
3,342,385	+				-2.3
3,342,385	+				-0.7
3,342,385	+				+1.0
3,342,385	+				-1.2
3,342,385	+				+1.3
3,342,385	+				+2.3
3,342,385	+				-0.1
3,342,385	+				+0.3
3,342,385	+				-2.0
3,342,385	+				+1.3
3,342,385	+				+0.8
3,342,385	+				+1.2
3,342,385	+				-1.9
3,342,385	+				-0.3
3,342,386	-				-3.0
3,342,386	-				-0.9
3,342,386	-				+0.1
3,342,386	-				-1.0
3,342,386	-				+1.2
3,342,386	-				+1.0
3,342,386	-				-0.5
3,342,428	+				+1.7
3,342,428	+				-1.8
3,342,428	+				-1.3
3,342,429	-				-1.1
3,342,429	-				+0.2
3,342,432	+				-2.6
3,342,432	+				-0.6
3,342,433	-				-0.7
3,342,433	-				+1.0
3,342,433	-				+0.2
3,342,457	+				-2.6
3,342,457	+				+0.4
3,342,457	+				-1.0
3,342,458	-				-0.6
3,342,458	-				-1.1
3,342,458	-				-1.5
3,342,458	-				+1.2
3,342,458	-				-2.0
3,342,458	-				+0.9
3,342,548	+				+1.2
3,342,625	-				+0.3
3,342,643	+				+0.2
3,342,644	-				+0.1
3,342,644	-				+1.2
3,342,644	-				+1.5
3,342,650	+				-3.2
3,342,650	+				-1.7
3,342,650	+				-0.7
3,342,651	-				+0.8
3,342,651	-				+0.6
3,342,651	-				+0.2
3,342,651	-				-0.2
3,342,654	-				-3.0
3,342,710	+				+0.8
3,342,754	-				-0.1
3,342,789	-		PfGW456L13_3001	0.12	+0.3
3,342,960	+		PfGW456L13_3001	0.30	+0.5
3,342,960	+		PfGW456L13_3001	0.30	-1.2
3,342,960	+		PfGW456L13_3001	0.30	+0.1
3,342,960	+		PfGW456L13_3001	0.30	+0.6
3,342,960	+		PfGW456L13_3001	0.30	+1.3
3,342,960	+		PfGW456L13_3001	0.30	+0.1
3,342,960	+		PfGW456L13_3001	0.30	+1.0
3,342,960	+		PfGW456L13_3001	0.30	-0.9
3,342,961	-		PfGW456L13_3001	0.30	+1.4
3,342,961	-		PfGW456L13_3001	0.30	-0.1
3,342,961	-		PfGW456L13_3001	0.30	+0.3
3,342,961	-		PfGW456L13_3001	0.30	-3.7
3,342,961	-		PfGW456L13_3001	0.30	-0.9
3,342,961	-		PfGW456L13_3001	0.30	+2.4
3,342,962	+		PfGW456L13_3001	0.30	+1.8
3,343,011	+		PfGW456L13_3001	0.35	+0.7
3,343,012	-		PfGW456L13_3001	0.35	+0.5
3,343,012	-		PfGW456L13_3001	0.35	-2.0
3,343,012	-				+3.2