Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1746

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1745 and PfGW456L13_1746 are separated by 191 nucleotidesPfGW456L13_1746 and PfGW456L13_1747 overlap by 4 nucleotides PfGW456L13_1745 - Alkyl hydroperoxide reductase subunit C-like protein, at 1,922,337 to 1,922,939 _1745 PfGW456L13_1746 - Ribonuclease T (EC 3.1.13.-), at 1,923,131 to 1,923,808 _1746 PfGW456L13_1747 - Dihydroorotase (EC 3.5.2.3), at 1,923,805 to 1,924,851 _1747 Position (kb) 1923 1924Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1922.205 kb on + strandat 1922.206 kb on - strandat 1922.206 kb on - strandat 1922.228 kb on + strandat 1922.228 kb on + strandat 1922.228 kb on + strandat 1922.228 kb on + strandat 1922.228 kb on + strandat 1922.228 kb on + strandat 1922.228 kb on + strandat 1922.228 kb on + strandat 1922.229 kb on - strandat 1922.229 kb on - strandat 1922.229 kb on - strandat 1922.229 kb on - strandat 1922.229 kb on - strandat 1922.229 kb on - strandat 1922.229 kb on - strandat 1922.229 kb on - strandat 1922.316 kb on + strandat 1922.316 kb on + strandat 1922.317 kb on - strandat 1922.317 kb on - strandat 1922.317 kb on - strandat 1922.317 kb on - strandat 1922.317 kb on - strandat 1922.317 kb on - strandat 1922.319 kb on + strandat 1922.319 kb on + strandat 1922.319 kb on + strandat 1922.319 kb on + strandat 1922.319 kb on + strandat 1922.320 kb on - strandat 1922.320 kb on - strandat 1922.320 kb on - strandat 1922.320 kb on - strandat 1922.320 kb on - strandat 1922.320 kb on - strandat 1922.320 kb on - strandat 1922.332 kb on - strandat 1922.344 kb on + strandat 1922.345 kb on - strandat 1922.345 kb on - strandat 1922.350 kb on + strandat 1922.386 kb on + strandat 1922.445 kb on + strand, within PfGW456L13_1745at 1922.445 kb on + strand, within PfGW456L13_1745at 1922.445 kb on + strand, within PfGW456L13_1745at 1922.446 kb on - strand, within PfGW456L13_1745at 1922.446 kb on - strand, within PfGW456L13_1745at 1922.446 kb on - strand, within PfGW456L13_1745at 1922.446 kb on - strand, within PfGW456L13_1745at 1922.463 kb on + strand, within PfGW456L13_1745at 1922.464 kb on - strand, within PfGW456L13_1745at 1922.679 kb on + strand, within PfGW456L13_1745at 1922.679 kb on + strand, within PfGW456L13_1745at 1922.679 kb on + strand, within PfGW456L13_1745at 1922.937 kb on + strandat 1922.937 kb on + strandat 1922.938 kb on - strandat 1922.985 kb on - strandat 1923.002 kb on + strandat 1923.002 kb on + strandat 1923.002 kb on + strandat 1923.003 kb on - strandat 1923.003 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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1,922,205 + -0.3
1,922,206 - +1.6
1,922,206 - +2.1
1,922,228 + -0.2
1,922,228 + +0.6
1,922,228 + +0.6
1,922,228 + +0.4
1,922,228 + +0.0
1,922,228 + -0.3
1,922,228 + -0.3
1,922,228 + -1.4
1,922,229 - +1.1
1,922,229 - +1.1
1,922,229 - -0.4
1,922,229 - -2.1
1,922,229 - -0.3
1,922,229 - -2.2
1,922,229 - +0.0
1,922,229 - -0.9
1,922,316 + +2.2
1,922,316 + -0.6
1,922,317 - -3.0
1,922,317 - -3.7
1,922,317 - -0.1
1,922,317 - -0.3
1,922,317 - +0.4
1,922,317 - +0.8
1,922,319 + +0.3
1,922,319 + +1.1
1,922,319 + -1.3
1,922,319 + +0.2
1,922,319 + +0.7
1,922,320 - +1.6
1,922,320 - +0.1
1,922,320 - -0.7
1,922,320 - -1.4
1,922,320 - +0.5
1,922,320 - -1.5
1,922,320 - +0.3
1,922,332 - +1.4
1,922,344 + -0.2
1,922,345 - -0.1
1,922,345 - -0.4
1,922,350 + +1.5
1,922,386 + -2.4
1,922,445 + PfGW456L13_1745 0.18 -1.3
1,922,445 + PfGW456L13_1745 0.18 -0.0
1,922,445 + PfGW456L13_1745 0.18 +0.2
1,922,446 - PfGW456L13_1745 0.18 -1.2
1,922,446 - PfGW456L13_1745 0.18 -0.0
1,922,446 - PfGW456L13_1745 0.18 -0.0
1,922,446 - PfGW456L13_1745 0.18 +1.0
1,922,463 + PfGW456L13_1745 0.21 -3.3
1,922,464 - PfGW456L13_1745 0.21 +1.0
1,922,679 + PfGW456L13_1745 0.57 +0.6
1,922,679 + PfGW456L13_1745 0.57 +0.1
1,922,679 + PfGW456L13_1745 0.57 -0.5
1,922,937 + +0.0
1,922,937 + +0.2
1,922,938 - +1.3
1,922,985 - -0.2
1,923,002 + -1.4
1,923,002 + +0.5
1,923,002 + +0.1
1,923,003 - -0.9
1,923,003 - -0.2

Or see this region's nucleotide sequence