Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1294

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1293 and PfGW456L13_1294 are separated by 70 nucleotidesPfGW456L13_1294 and PfGW456L13_1295 overlap by 4 nucleotidesPfGW456L13_1295 and PfGW456L13_1296 overlap by 4 nucleotides PfGW456L13_1293 - Inner membrane protein YbhQ, at 1,431,503 to 1,432,405 _1293 PfGW456L13_1294 - Cardiolipin synthetase (EC 2.7.8.-), at 1,432,476 to 1,433,768 _1294 PfGW456L13_1295 - Endonuclease/Exonuclease/phosphatase family protein, at 1,433,765 to 1,434,562 _1295 PfGW456L13_1296 - FIG003003: hypothetical protein, at 1,434,559 to 1,435,161 _1296 Position (kb) 1432 1433 1434Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1431.558 kb on + strandat 1431.558 kb on + strandat 1431.558 kb on + strandat 1431.558 kb on + strandat 1431.558 kb on + strandat 1431.558 kb on + strandat 1431.558 kb on + strandat 1431.559 kb on - strandat 1431.559 kb on - strandat 1431.594 kb on + strand, within PfGW456L13_1293at 1431.594 kb on + strand, within PfGW456L13_1293at 1431.594 kb on + strand, within PfGW456L13_1293at 1431.757 kb on - strand, within PfGW456L13_1293at 1431.921 kb on + strand, within PfGW456L13_1293at 1431.941 kb on + strand, within PfGW456L13_1293at 1431.942 kb on - strand, within PfGW456L13_1293at 1432.001 kb on + strandat 1432.001 kb on + strand, within PfGW456L13_1293at 1432.001 kb on + strand, within PfGW456L13_1293at 1432.002 kb on - strand, within PfGW456L13_1293at 1432.002 kb on - strand, within PfGW456L13_1293at 1432.042 kb on - strand, within PfGW456L13_1293at 1432.042 kb on - strand, within PfGW456L13_1293at 1432.116 kb on + strand, within PfGW456L13_1293at 1432.116 kb on + strand, within PfGW456L13_1293at 1432.116 kb on + strand, within PfGW456L13_1293at 1432.117 kb on - strand, within PfGW456L13_1293at 1432.117 kb on - strand, within PfGW456L13_1293at 1432.176 kb on + strand, within PfGW456L13_1293at 1432.176 kb on + strand, within PfGW456L13_1293at 1432.176 kb on + strand, within PfGW456L13_1293at 1432.177 kb on - strand, within PfGW456L13_1293at 1432.177 kb on - strand, within PfGW456L13_1293at 1432.177 kb on - strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.230 kb on + strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.231 kb on - strand, within PfGW456L13_1293at 1432.260 kb on + strand, within PfGW456L13_1293at 1432.260 kb on + strand, within PfGW456L13_1293at 1432.260 kb on + strand, within PfGW456L13_1293at 1432.261 kb on - strand, within PfGW456L13_1293at 1432.261 kb on - strand, within PfGW456L13_1293at 1432.261 kb on - strand, within PfGW456L13_1293at 1432.261 kb on - strand, within PfGW456L13_1293at 1432.261 kb on - strand, within PfGW456L13_1293at 1432.261 kb on - strand, within PfGW456L13_1293at 1432.535 kb on + strandat 1432.536 kb on - strandat 1432.536 kb on - strandat 1432.776 kb on + strand, within PfGW456L13_1294at 1432.776 kb on + strand, within PfGW456L13_1294at 1432.777 kb on - strand, within PfGW456L13_1294at 1432.777 kb on - strand, within PfGW456L13_1294at 1432.835 kb on - strand, within PfGW456L13_1294at 1432.835 kb on - strand, within PfGW456L13_1294at 1432.835 kb on - strand, within PfGW456L13_1294at 1432.840 kb on + strand, within PfGW456L13_1294at 1432.841 kb on - strand, within PfGW456L13_1294at 1432.841 kb on - strand, within PfGW456L13_1294at 1432.867 kb on + strand, within PfGW456L13_1294at 1432.867 kb on + strand, within PfGW456L13_1294at 1432.868 kb on - strand, within PfGW456L13_1294at 1432.868 kb on - strand, within PfGW456L13_1294at 1432.868 kb on - strand, within PfGW456L13_1294at 1432.868 kb on - strand, within PfGW456L13_1294at 1432.873 kb on + strand, within PfGW456L13_1294at 1432.873 kb on + strand, within PfGW456L13_1294at 1432.873 kb on + strand, within PfGW456L13_1294at 1432.873 kb on + strand, within PfGW456L13_1294at 1432.873 kb on + strand, within PfGW456L13_1294at 1432.874 kb on - strand, within PfGW456L13_1294at 1432.874 kb on - strand, within PfGW456L13_1294at 1432.999 kb on + strand, within PfGW456L13_1294at 1433.000 kb on - strand, within PfGW456L13_1294at 1433.000 kb on - strand, within PfGW456L13_1294at 1433.000 kb on - strand, within PfGW456L13_1294at 1433.000 kb on - strand, within PfGW456L13_1294at 1433.040 kb on + strand, within PfGW456L13_1294at 1433.040 kb on + strand, within PfGW456L13_1294at 1433.040 kb on + strand, within PfGW456L13_1294at 1433.041 kb on - strand, within PfGW456L13_1294at 1433.050 kb on + strand, within PfGW456L13_1294at 1433.051 kb on - strand, within PfGW456L13_1294at 1433.093 kb on - strand, within PfGW456L13_1294at 1433.167 kb on + strand, within PfGW456L13_1294at 1433.168 kb on - strand, within PfGW456L13_1294at 1433.168 kb on - strand, within PfGW456L13_1294at 1433.168 kb on - strand, within PfGW456L13_1294at 1433.251 kb on + strand, within PfGW456L13_1294at 1433.252 kb on - strand, within PfGW456L13_1294at 1433.252 kb on - strand, within PfGW456L13_1294at 1433.632 kb on + strand, within PfGW456L13_1294at 1433.633 kb on - strand, within PfGW456L13_1294at 1433.683 kb on + strandat 1433.768 kb on + strandat 1433.768 kb on + strandat 1433.768 kb on + strandat 1433.768 kb on + strandat 1433.768 kb on + strandat 1433.769 kb on - strandat 1433.769 kb on - strandat 1433.861 kb on + strand, within PfGW456L13_1295at 1433.861 kb on + strand, within PfGW456L13_1295at 1433.862 kb on - strand, within PfGW456L13_1295at 1433.862 kb on - strand, within PfGW456L13_1295at 1433.862 kb on - strand, within PfGW456L13_1295at 1433.865 kb on + strand, within PfGW456L13_1295at 1433.865 kb on + strand, within PfGW456L13_1295at 1433.865 kb on + strand, within PfGW456L13_1295at 1433.865 kb on + strand, within PfGW456L13_1295at 1433.865 kb on + strand, within PfGW456L13_1295at 1433.865 kb on + strand, within PfGW456L13_1295at 1433.865 kb on + strand, within PfGW456L13_1295at 1433.865 kb on + strand, within PfGW456L13_1295at 1433.865 kb on + strand, within PfGW456L13_1295at 1433.865 kb on + strand, within PfGW456L13_1295at 1433.865 kb on + strand, within PfGW456L13_1295at 1433.865 kb on + strand, within PfGW456L13_1295at 1433.865 kb on + strand, within PfGW456L13_1295at 1433.866 kb on - strand, within PfGW456L13_1295at 1433.866 kb on - strand, within PfGW456L13_1295at 1433.866 kb on - strand, within PfGW456L13_1295at 1433.866 kb on - strand, within PfGW456L13_1295at 1433.866 kb on - strand, within PfGW456L13_1295at 1433.866 kb on - strand, within PfGW456L13_1295at 1433.866 kb on - strand, within PfGW456L13_1295at 1433.866 kb on - strand, within PfGW456L13_1295at 1433.866 kb on - strand, within PfGW456L13_1295at 1433.866 kb on - strand, within PfGW456L13_1295at 1433.866 kb on - strand, within PfGW456L13_1295at 1433.866 kb on - strand, within PfGW456L13_1295at 1433.866 kb on - strand, within PfGW456L13_1295at 1433.866 kb on - strand, within PfGW456L13_1295at 1433.866 kb on - strand, within PfGW456L13_1295at 1434.116 kb on + strand, within PfGW456L13_1295at 1434.116 kb on + strand, within PfGW456L13_1295at 1434.116 kb on + strand, within PfGW456L13_1295at 1434.116 kb on + strand, within PfGW456L13_1295at 1434.116 kb on + strand, within PfGW456L13_1295at 1434.117 kb on - strand, within PfGW456L13_1295at 1434.117 kb on - strand, within PfGW456L13_1295at 1434.117 kb on - strand, within PfGW456L13_1295at 1434.117 kb on - strand, within PfGW456L13_1295at 1434.117 kb on - strand, within PfGW456L13_1295at 1434.117 kb on - strand, within PfGW456L13_1295at 1434.117 kb on - strand, within PfGW456L13_1295at 1434.117 kb on - strand, within PfGW456L13_1295at 1434.342 kb on + strand, within PfGW456L13_1295at 1434.343 kb on - strand, within PfGW456L13_1295at 1434.343 kb on - strand, within PfGW456L13_1295at 1434.405 kb on - strand, within PfGW456L13_1295at 1434.405 kb on - strand, within PfGW456L13_1295at 1434.405 kb on - strand, within PfGW456L13_1295at 1434.425 kb on + strand, within PfGW456L13_1295at 1434.425 kb on + strand, within PfGW456L13_1295at 1434.425 kb on + strand, within PfGW456L13_1295at 1434.425 kb on + strand, within PfGW456L13_1295at 1434.425 kb on + strand, within PfGW456L13_1295at 1434.425 kb on + strand, within PfGW456L13_1295at 1434.425 kb on + strand, within PfGW456L13_1295at 1434.426 kb on - strand, within PfGW456L13_1295at 1434.426 kb on - strand, within PfGW456L13_1295at 1434.426 kb on - strand, within PfGW456L13_1295at 1434.683 kb on + strand, within PfGW456L13_1296at 1434.683 kb on + strand, within PfGW456L13_1296at 1434.683 kb on + strand, within PfGW456L13_1296at 1434.683 kb on + strand, within PfGW456L13_1296at 1434.684 kb on - strand, within PfGW456L13_1296

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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1,431,558 + -0.9
1,431,558 + +1.8
1,431,558 + -1.6
1,431,558 + +0.6
1,431,558 + -0.7
1,431,558 + +0.4
1,431,558 + +0.5
1,431,559 - -1.5
1,431,559 - -0.1
1,431,594 + PfGW456L13_1293 0.10 +0.2
1,431,594 + PfGW456L13_1293 0.10 -1.1
1,431,594 + PfGW456L13_1293 0.10 -0.3
1,431,757 - PfGW456L13_1293 0.28 -0.6
1,431,921 + PfGW456L13_1293 0.46 +1.9
1,431,941 + PfGW456L13_1293 0.49 -0.1
1,431,942 - PfGW456L13_1293 0.49 +0.6
1,432,001 + -1.5
1,432,001 + PfGW456L13_1293 0.55 +0.2
1,432,001 + PfGW456L13_1293 0.55 +0.9
1,432,002 - PfGW456L13_1293 0.55 +0.7
1,432,002 - PfGW456L13_1293 0.55 -0.4
1,432,042 - PfGW456L13_1293 0.60 -1.6
1,432,042 - PfGW456L13_1293 0.60 +0.7
1,432,116 + PfGW456L13_1293 0.68 -0.6
1,432,116 + PfGW456L13_1293 0.68 +1.4
1,432,116 + PfGW456L13_1293 0.68 -2.2
1,432,117 - PfGW456L13_1293 0.68 +1.4
1,432,117 - PfGW456L13_1293 0.68 -0.8
1,432,176 + PfGW456L13_1293 0.75 -0.5
1,432,176 + PfGW456L13_1293 0.75 -0.4
1,432,176 + PfGW456L13_1293 0.75 -0.1
1,432,177 - PfGW456L13_1293 0.75 +1.2
1,432,177 - PfGW456L13_1293 0.75 +1.4
1,432,177 - PfGW456L13_1293 0.75 +0.4
1,432,230 + PfGW456L13_1293 0.81 +0.0
1,432,230 + PfGW456L13_1293 0.81 +0.7
1,432,230 + PfGW456L13_1293 0.81 -0.4
1,432,230 + PfGW456L13_1293 0.81 +0.5
1,432,230 + PfGW456L13_1293 0.81 +1.6
1,432,230 + PfGW456L13_1293 0.81 -0.3
1,432,230 + PfGW456L13_1293 0.81 +0.9
1,432,230 + PfGW456L13_1293 0.81 +0.4
1,432,230 + PfGW456L13_1293 0.81 -0.8
1,432,230 + PfGW456L13_1293 0.81 +0.0
1,432,230 + PfGW456L13_1293 0.81 +1.4
1,432,231 - PfGW456L13_1293 0.81 +0.4
1,432,231 - PfGW456L13_1293 0.81 +0.2
1,432,231 - PfGW456L13_1293 0.81 +0.9
1,432,231 - PfGW456L13_1293 0.81 +0.2
1,432,231 - PfGW456L13_1293 0.81 +0.1
1,432,231 - PfGW456L13_1293 0.81 -0.9
1,432,231 - PfGW456L13_1293 0.81 -0.8
1,432,231 - PfGW456L13_1293 0.81 +0.5
1,432,231 - PfGW456L13_1293 0.81 +0.2
1,432,231 - PfGW456L13_1293 0.81 -2.3
1,432,231 - PfGW456L13_1293 0.81 -1.0
1,432,231 - PfGW456L13_1293 0.81 -3.4
1,432,231 - PfGW456L13_1293 0.81 +1.3
1,432,260 + PfGW456L13_1293 0.84 +1.0
1,432,260 + PfGW456L13_1293 0.84 +2.2
1,432,260 + PfGW456L13_1293 0.84 -0.1
1,432,261 - PfGW456L13_1293 0.84 +0.4
1,432,261 - PfGW456L13_1293 0.84 -2.6
1,432,261 - PfGW456L13_1293 0.84 -0.3
1,432,261 - PfGW456L13_1293 0.84 +0.1
1,432,261 - PfGW456L13_1293 0.84 +0.6
1,432,261 - PfGW456L13_1293 0.84 +1.8
1,432,535 + -2.2
1,432,536 - +0.4
1,432,536 - -0.0
1,432,776 + PfGW456L13_1294 0.23 +0.0
1,432,776 + PfGW456L13_1294 0.23 -2.2
1,432,777 - PfGW456L13_1294 0.23 -0.1
1,432,777 - PfGW456L13_1294 0.23 +0.3
1,432,835 - PfGW456L13_1294 0.28 +0.4
1,432,835 - PfGW456L13_1294 0.28 +0.4
1,432,835 - PfGW456L13_1294 0.28 +0.3
1,432,840 + PfGW456L13_1294 0.28 +0.0
1,432,841 - PfGW456L13_1294 0.28 +1.0
1,432,841 - PfGW456L13_1294 0.28 +0.8
1,432,867 + PfGW456L13_1294 0.30 +0.3
1,432,867 + PfGW456L13_1294 0.30 -1.7
1,432,868 - PfGW456L13_1294 0.30 -1.5
1,432,868 - PfGW456L13_1294 0.30 +0.7
1,432,868 - PfGW456L13_1294 0.30 -1.3
1,432,868 - PfGW456L13_1294 0.30 -3.2
1,432,873 + PfGW456L13_1294 0.31 -0.1
1,432,873 + PfGW456L13_1294 0.31 +0.8
1,432,873 + PfGW456L13_1294 0.31 -2.9
1,432,873 + PfGW456L13_1294 0.31 -0.2
1,432,873 + PfGW456L13_1294 0.31 -1.4
1,432,874 - PfGW456L13_1294 0.31 +1.6
1,432,874 - PfGW456L13_1294 0.31 -2.0
1,432,999 + PfGW456L13_1294 0.40 -0.2
1,433,000 - PfGW456L13_1294 0.41 -1.4
1,433,000 - PfGW456L13_1294 0.41 +0.5
1,433,000 - PfGW456L13_1294 0.41 -0.8
1,433,000 - PfGW456L13_1294 0.41 -1.6
1,433,040 + PfGW456L13_1294 0.44 -0.0
1,433,040 + PfGW456L13_1294 0.44 -3.3
1,433,040 + PfGW456L13_1294 0.44 -1.3
1,433,041 - PfGW456L13_1294 0.44 +1.0
1,433,050 + PfGW456L13_1294 0.44 +1.0
1,433,051 - PfGW456L13_1294 0.44 +0.0
1,433,093 - PfGW456L13_1294 0.48 -1.8
1,433,167 + PfGW456L13_1294 0.53 -0.1
1,433,168 - PfGW456L13_1294 0.54 -2.5
1,433,168 - PfGW456L13_1294 0.54 +0.6
1,433,168 - PfGW456L13_1294 0.54 -0.3
1,433,251 + PfGW456L13_1294 0.60 -0.3
1,433,252 - PfGW456L13_1294 0.60 -1.4
1,433,252 - PfGW456L13_1294 0.60 -1.6
1,433,632 + PfGW456L13_1294 0.89 +1.0
1,433,633 - PfGW456L13_1294 0.89 +0.6
1,433,683 + -1.3
1,433,768 + -2.5
1,433,768 + +0.3
1,433,768 + +1.0
1,433,768 + +0.4
1,433,768 + +0.7
1,433,769 - -0.7
1,433,769 - +0.8
1,433,861 + PfGW456L13_1295 0.12 -0.4
1,433,861 + PfGW456L13_1295 0.12 -0.4
1,433,862 - PfGW456L13_1295 0.12 -3.8
1,433,862 - PfGW456L13_1295 0.12 -1.3
1,433,862 - PfGW456L13_1295 0.12 -0.4
1,433,865 + PfGW456L13_1295 0.13 +1.4
1,433,865 + PfGW456L13_1295 0.13 +0.5
1,433,865 + PfGW456L13_1295 0.13 +1.9
1,433,865 + PfGW456L13_1295 0.13 +0.3
1,433,865 + PfGW456L13_1295 0.13 +0.4
1,433,865 + PfGW456L13_1295 0.13 +0.8
1,433,865 + PfGW456L13_1295 0.13 -0.8
1,433,865 + PfGW456L13_1295 0.13 -1.1
1,433,865 + PfGW456L13_1295 0.13 -1.0
1,433,865 + PfGW456L13_1295 0.13 +0.8
1,433,865 + PfGW456L13_1295 0.13 -1.7
1,433,865 + PfGW456L13_1295 0.13 +1.0
1,433,865 + PfGW456L13_1295 0.13 -0.1
1,433,866 - PfGW456L13_1295 0.13 +1.3
1,433,866 - PfGW456L13_1295 0.13 +1.6
1,433,866 - PfGW456L13_1295 0.13 -1.3
1,433,866 - PfGW456L13_1295 0.13 +1.7
1,433,866 - PfGW456L13_1295 0.13 +1.5
1,433,866 - PfGW456L13_1295 0.13 +0.3
1,433,866 - PfGW456L13_1295 0.13 +0.2
1,433,866 - PfGW456L13_1295 0.13 +1.1
1,433,866 - PfGW456L13_1295 0.13 -1.5
1,433,866 - PfGW456L13_1295 0.13 +0.9
1,433,866 - PfGW456L13_1295 0.13 -0.4
1,433,866 - PfGW456L13_1295 0.13 +1.1
1,433,866 - PfGW456L13_1295 0.13 +0.0
1,433,866 - PfGW456L13_1295 0.13 -0.5
1,433,866 - PfGW456L13_1295 0.13 +0.1
1,434,116 + PfGW456L13_1295 0.44 -2.5
1,434,116 + PfGW456L13_1295 0.44 +0.9
1,434,116 + PfGW456L13_1295 0.44 -1.5
1,434,116 + PfGW456L13_1295 0.44 -1.8
1,434,116 + PfGW456L13_1295 0.44 -1.4
1,434,117 - PfGW456L13_1295 0.44 +0.5
1,434,117 - PfGW456L13_1295 0.44 +1.5
1,434,117 - PfGW456L13_1295 0.44 +0.0
1,434,117 - PfGW456L13_1295 0.44 -1.0
1,434,117 - PfGW456L13_1295 0.44 +0.9
1,434,117 - PfGW456L13_1295 0.44 -1.6
1,434,117 - PfGW456L13_1295 0.44 -1.0
1,434,117 - PfGW456L13_1295 0.44 -0.9
1,434,342 + PfGW456L13_1295 0.72 +0.8
1,434,343 - PfGW456L13_1295 0.72 -0.5
1,434,343 - PfGW456L13_1295 0.72 -0.1
1,434,405 - PfGW456L13_1295 0.80 -0.5
1,434,405 - PfGW456L13_1295 0.80 +1.5
1,434,405 - PfGW456L13_1295 0.80 +1.7
1,434,425 + PfGW456L13_1295 0.83 +0.1
1,434,425 + PfGW456L13_1295 0.83 -0.4
1,434,425 + PfGW456L13_1295 0.83 +0.2
1,434,425 + PfGW456L13_1295 0.83 -1.1
1,434,425 + PfGW456L13_1295 0.83 +2.8
1,434,425 + PfGW456L13_1295 0.83 -2.2
1,434,425 + PfGW456L13_1295 0.83 +0.7
1,434,426 - PfGW456L13_1295 0.83 -0.5
1,434,426 - PfGW456L13_1295 0.83 -0.3
1,434,426 - PfGW456L13_1295 0.83 +0.3
1,434,683 + PfGW456L13_1296 0.21 +0.9
1,434,683 + PfGW456L13_1296 0.21 +0.6
1,434,683 + PfGW456L13_1296 0.21 -0.8
1,434,683 + PfGW456L13_1296 0.21 +0.9
1,434,684 - PfGW456L13_1296 0.21 -0.1

Or see this region's nucleotide sequence