Strain Fitness in Pseudomonas sp. RS175 around PFR28_04273

Experiment: Uridine (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Uridine (C) 10 mM
4,873,358	+		PFR28_04271	0.72	+0.9
4,873,359	-		PFR28_04271	0.73	-0.4
4,873,472	-				+0.6
4,873,472	-				+0.8
4,873,477	+				+0.6
4,873,477	+				-0.5
4,873,477	+				-0.8
4,873,477	+				+0.2
4,873,477	+				-0.0
4,873,478	-				+0.1
4,873,484	+				+0.1
4,873,484	+				+0.1
4,873,484	+				+1.0
4,873,485	-				+0.3
4,873,485	-				+0.6
4,873,486	+				-0.4
4,873,486	+				+0.7
4,873,486	+				-0.2
4,873,486	+				+0.5
4,873,486	+				-0.0
4,873,486	+				-0.1
4,873,486	+				+0.1
4,873,486	+				-0.4
4,873,486	+				+0.2
4,873,486	+				+0.4
4,873,487	-				-1.1
4,873,487	-				-1.2
4,873,487	-				-0.1
4,873,487	-				+0.3
4,873,487	-				-0.9
4,873,487	-				+0.8
4,873,487	-				-2.7
4,873,604	-		PFR28_04272	0.12	+0.2
4,873,627	+		PFR28_04272	0.15	-0.0
4,873,801	+		PFR28_04272	0.37	+0.4
4,873,801	+		PFR28_04272	0.37	-0.0
4,873,801	+		PFR28_04272	0.37	+0.6
4,873,801	+		PFR28_04272	0.37	-0.9
4,873,801	+		PFR28_04272	0.37	-0.4
4,873,801	+		PFR28_04272	0.37	-0.6
4,873,801	+		PFR28_04272	0.37	-0.9
4,873,801	+		PFR28_04272	0.37	-0.9
4,873,801	+		PFR28_04272	0.37	+0.2
4,873,801	+		PFR28_04272	0.37	-0.1
4,873,801	+		PFR28_04272	0.37	+0.1
4,873,802	-		PFR28_04272	0.37	-0.5
4,873,802	-		PFR28_04272	0.37	+0.2
4,873,802	-		PFR28_04272	0.37	-1.1
4,873,802	-		PFR28_04272	0.37	+1.2
4,873,802	-		PFR28_04272	0.37	+1.4
4,873,802	-		PFR28_04272	0.37	+1.4
4,873,805	+		PFR28_04272	0.37	+1.6
4,873,805	+		PFR28_04272	0.37	-0.1
4,873,805	+		PFR28_04272	0.37	-1.3
4,873,805	+		PFR28_04272	0.37	-0.3
4,873,805	+		PFR28_04272	0.37	+2.1
4,873,805	+		PFR28_04272	0.37	+1.9
4,873,805	+		PFR28_04272	0.37	+3.5
4,873,805	+		PFR28_04272	0.37	+0.4
4,873,806	-		PFR28_04272	0.37	-0.4
4,873,806	-		PFR28_04272	0.37	-2.2
4,873,806	-		PFR28_04272	0.37	+0.9
4,873,806	-		PFR28_04272	0.37	+0.2
4,873,806	-		PFR28_04272	0.37	+0.3
4,873,806	-		PFR28_04272	0.37	-0.8
4,874,000	-		PFR28_04272	0.61	+0.7
4,874,140	+		PFR28_04272	0.78	+0.0
4,874,140	+		PFR28_04272	0.78	-0.9
4,874,141	-		PFR28_04272	0.78	+1.0
4,874,405	-				+0.0
4,874,422	+				+0.8
4,874,422	+				+0.7
4,874,422	+				+0.1
4,874,423	-				+0.4
4,874,423	-				-1.5
4,874,423	-				+0.2
4,874,647	+		PFR28_04273	0.34	+0.1
4,874,647	+		PFR28_04273	0.34	+1.0
4,874,647	+		PFR28_04273	0.34	+0.7
4,874,647	+		PFR28_04273	0.34	-0.5
4,874,648	-		PFR28_04273	0.34	+0.5
4,874,648	-		PFR28_04273	0.34	-0.4
4,874,648	-		PFR28_04273	0.34	-0.7
4,874,672	+		PFR28_04273	0.36	+0.1
4,874,672	+		PFR28_04273	0.36	-0.0
4,874,728	+		PFR28_04273	0.43	+1.9
4,874,728	+		PFR28_04273	0.43	-0.2
4,874,728	+		PFR28_04273	0.43	-0.2
4,874,729	-		PFR28_04273	0.43	+0.5
4,874,729	-		PFR28_04273	0.43	-1.2
4,874,752	+		PFR28_04273	0.46	+0.7
4,874,752	+		PFR28_04273	0.46	-1.4
4,874,752	+		PFR28_04273	0.46	-0.1
4,874,752	+		PFR28_04273	0.46	-0.1
4,874,752	+		PFR28_04273	0.46	+0.1
4,874,752	+		PFR28_04273	0.46	-0.2
4,874,752	+		PFR28_04273	0.46	-0.3
4,874,752	+		PFR28_04273	0.46	+2.1
4,874,752	+		PFR28_04273	0.46	-0.7
4,874,752	+		PFR28_04273	0.46	+1.4
4,874,752	+		PFR28_04273	0.46	+0.5
4,874,752	+		PFR28_04273	0.46	+0.7
4,874,752	+		PFR28_04273	0.46	-0.2
4,874,752	+		PFR28_04273	0.46	+0.2
4,874,753	-		PFR28_04273	0.46	-0.9
4,874,753	-		PFR28_04273	0.46	+0.1
4,874,753	-		PFR28_04273	0.46	-3.3
4,874,753	-		PFR28_04273	0.46	+0.0
4,874,753	-		PFR28_04273	0.46	+0.2
4,874,753	-		PFR28_04273	0.46	-2.2
4,874,753	-		PFR28_04273	0.46	+1.4
4,874,753	-		PFR28_04273	0.46	+0.2
4,874,753	-		PFR28_04273	0.46	+0.7
4,874,753	-		PFR28_04273	0.46	-0.0
4,874,812	+		PFR28_04273	0.53	-0.5
4,874,812	+		PFR28_04273	0.53	+1.2
4,874,812	+		PFR28_04273	0.53	-0.2
4,874,813	-		PFR28_04273	0.53	+0.6
4,874,813	-		PFR28_04273	0.53	+1.2
4,874,813	-		PFR28_04273	0.53	+0.1
4,874,915	+		PFR28_04273	0.64	-2.7
4,874,916	-		PFR28_04273	0.64	+1.5
4,874,916	-		PFR28_04273	0.64	-0.7
4,875,029	-		PFR28_04273	0.77	+0.6
4,875,031	+		PFR28_04273	0.78	-0.1
4,875,031	+		PFR28_04273	0.78	+0.2
4,875,124	+		PFR28_04273	0.88	+0.2
4,875,124	+		PFR28_04273	0.88	+0.2
4,875,124	+		PFR28_04273	0.88	+1.1
4,875,124	+		PFR28_04273	0.88	+0.2
4,875,124	+		PFR28_04273	0.88	-0.8
4,875,124	+		PFR28_04273	0.88	+0.8
4,875,124	+		PFR28_04273	0.88	+0.1
4,875,124	+		PFR28_04273	0.88	+0.9
4,875,124	+		PFR28_04273	0.88	-0.4
4,875,124	+		PFR28_04273	0.88	+0.5
4,875,124	+		PFR28_04273	0.88	-0.8
4,875,124	+		PFR28_04273	0.88	+0.4
4,875,124	+		PFR28_04273	0.88	+1.1
4,875,124	+		PFR28_04273	0.88	+0.7
4,875,124	+		PFR28_04273	0.88	+0.4
4,875,124	+		PFR28_04273	0.88	-0.5
4,875,124	+		PFR28_04273	0.88	-0.1
4,875,124	+		PFR28_04273	0.88	-0.4
4,875,125	-		PFR28_04273	0.89	-0.4
4,875,125	-		PFR28_04273	0.89	-1.2
4,875,125	-		PFR28_04273	0.89	+1.0
4,875,125	-		PFR28_04273	0.89	+1.1
4,875,125	-		PFR28_04273	0.89	+1.5
4,875,125	-		PFR28_04273	0.89	-0.2
4,875,125	-		PFR28_04273	0.89	-1.7
4,875,125	-		PFR28_04273	0.89	+0.1
4,875,125	-		PFR28_04273	0.89	+1.0
4,875,125	-		PFR28_04273	0.89	-0.1
4,875,125	-		PFR28_04273	0.89	+0.1
4,875,125	-		PFR28_04273	0.89	-0.3
4,875,125	-		PFR28_04273	0.89	+0.4
4,875,125	-		PFR28_04273	0.89	-1.1
4,875,125	-		PFR28_04273	0.89	-2.1
4,875,125	-		PFR28_04273	0.89	+2.0
4,875,257	+				+0.6
4,875,258	-				-0.2
4,875,258	-				-0.4
4,875,317	+				+0.5
4,875,318	-				+0.5
4,875,318	-				+0.5
4,875,318	-				+0.5
4,875,325	+				+0.1
4,875,325	+				-1.1
4,875,326	-				+0.8
4,875,326	-				+0.1
4,875,326	-				+0.2
4,875,326	-				-0.5
4,875,326	-				-1.2
4,875,363	+				+0.5
4,875,363	+				+0.5
4,875,464	+				+0.3
4,875,464	+				+1.6
4,875,464	+				-0.6
4,875,466	+				-1.2
4,875,466	+				-1.0
4,875,466	+				-1.1
4,875,467	-				+0.5
4,875,565	+				-1.2
4,875,565	+				-0.1
4,875,565	+				+0.5
4,875,565	+				-0.3
4,875,565	+				+1.4
4,875,565	+				+0.6
4,875,566	-				+0.1
4,875,570	+				+0.4
4,875,746	+		PFR28_04274	0.21	-1.7
4,875,747	-		PFR28_04274	0.21	-0.9
4,875,747	-		PFR28_04274	0.21	-0.7
4,875,747	-		PFR28_04274	0.21	+0.0
4,875,802	+		PFR28_04274	0.26	-0.2
4,875,803	-		PFR28_04274	0.26	+0.4
4,875,803	-		PFR28_04274	0.26	-0.3
4,875,803	-		PFR28_04274	0.26	+1.0
4,875,814	+		PFR28_04274	0.27	-0.6
4,875,814	+		PFR28_04274	0.27	+0.1
4,875,814	+		PFR28_04274	0.27	+0.4
4,875,814	+		PFR28_04274	0.27	-0.5
4,875,906	+		PFR28_04274	0.34	-1.5
4,875,907	-		PFR28_04274	0.34	+0.4
4,876,006	+		PFR28_04274	0.43	-2.6
4,876,006	+		PFR28_04274	0.43	-0.1
4,876,006	+		PFR28_04274	0.43	-0.1
4,876,006	+		PFR28_04274	0.43	-0.6
4,876,006	+		PFR28_04274	0.43	-0.4
4,876,006	+		PFR28_04274	0.43	+0.3
4,876,006	+		PFR28_04274	0.43	-1.9
4,876,006	+		PFR28_04274	0.43	+0.8
4,876,006	+		PFR28_04274	0.43	+0.4
4,876,007	-		PFR28_04274	0.43	-0.3
4,876,007	-		PFR28_04274	0.43	+0.5
4,876,007	-		PFR28_04274	0.43	-0.5
4,876,007	-		PFR28_04274	0.43	+0.5
4,876,007	-		PFR28_04274	0.43	-0.7
4,876,111	+		PFR28_04274	0.51	+0.2
4,876,111	+		PFR28_04274	0.51	-2.7
4,876,111	+		PFR28_04274	0.51	+0.2
4,876,111	+		PFR28_04274	0.51	-0.1
4,876,147	+		PFR28_04274	0.54	-0.0
4,876,147	+		PFR28_04274	0.54	+1.0
4,876,148	-		PFR28_04274	0.54	+0.9
4,876,148	-		PFR28_04274	0.54	+0.3
4,876,183	+		PFR28_04274	0.57	-0.0
4,876,183	+		PFR28_04274	0.57	+1.5
4,876,183	+		PFR28_04274	0.57	-0.5
4,876,183	+		PFR28_04274	0.57	-0.1
4,876,184	-		PFR28_04274	0.57	-0.5
4,876,184	-		PFR28_04274	0.57	+0.8