Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3960

Experiment: m.b. benzoic 0.4 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_3958 and Echvi_3959 are separated by 3 nucleotidesEchvi_3959 and Echvi_3960 are separated by 111 nucleotidesEchvi_3960 and Echvi_3961 are separated by 97 nucleotides Echvi_3958: Echvi_3958 - hypothetical protein, at 4,744,252 to 4,744,740 _3958 Echvi_3959: Echvi_3959 - dihydrodipicolinate synthase, at 4,744,744 to 4,745,604 _3959 Echvi_3960: Echvi_3960 - Histone H1-like protein Hc1., at 4,745,716 to 4,745,892 _3960 Echvi_3961: Echvi_3961 - 7-keto-8-aminopelargonate synthetase and related enzymes, at 4,745,990 to 4,747,240 _3961 Position (kb) 4745 4746Strain fitness (log2 ratio) -1 0 1at 4745.609 kb on - strandat 4745.620 kb on + strandat 4745.620 kb on + strandat 4745.620 kb on + strandat 4745.620 kb on + strandat 4745.653 kb on + strandat 4745.654 kb on - strandat 4745.655 kb on + strandat 4745.655 kb on + strandat 4745.656 kb on - strandat 4745.656 kb on - strandat 4745.656 kb on - strandat 4745.656 kb on - strandat 4745.656 kb on - strandat 4745.656 kb on - strandat 4745.656 kb on - strandat 4745.682 kb on - strandat 4745.712 kb on + strandat 4745.712 kb on + strandat 4745.712 kb on + strandat 4745.713 kb on - strandat 4745.714 kb on + strandat 4745.714 kb on + strandat 4745.714 kb on + strandat 4745.715 kb on - strandat 4745.717 kb on + strandat 4745.725 kb on - strandat 4745.766 kb on + strand, within Echvi_3960at 4745.802 kb on + strand, within Echvi_3960at 4745.871 kb on + strand, within Echvi_3960at 4745.959 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
remove
4,745,609 - -0.0
4,745,620 + +0.6
4,745,620 + +1.6
4,745,620 + -0.3
4,745,620 + -0.4
4,745,653 + +0.0
4,745,654 - +0.0
4,745,655 + +1.4
4,745,655 + +0.6
4,745,656 - +0.2
4,745,656 - +0.1
4,745,656 - -0.3
4,745,656 - -0.7
4,745,656 - -1.1
4,745,656 - -0.2
4,745,656 - +0.5
4,745,682 - +0.5
4,745,712 + -0.6
4,745,712 + -0.0
4,745,712 + -0.1
4,745,713 - -0.5
4,745,714 + +0.9
4,745,714 + -0.8
4,745,714 + +0.7
4,745,715 - +0.2
4,745,717 + +0.2
4,745,725 - +0.3
4,745,766 + Echvi_3960 0.28 +1.4
4,745,802 + Echvi_3960 0.49 +0.9
4,745,871 + Echvi_3960 0.88 -0.2
4,745,959 + -0.2

Or see this region's nucleotide sequence