Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3233

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3231 and Echvi_3232 are separated by 18 nucleotidesEchvi_3232 and Echvi_3233 overlap by 20 nucleotidesEchvi_3233 and Echvi_3234 are separated by 16 nucleotidesEchvi_3234 and Echvi_3235 are separated by 80 nucleotides Echvi_3231: Echvi_3231 - Type IV secretory pathway, VirD4 components, at 3,829,595 to 3,831,616 _3231 Echvi_3232: Echvi_3232 - RteC protein., at 3,831,635 to 3,832,552 _3232 Echvi_3233: Echvi_3233 - hypothetical protein, at 3,832,533 to 3,832,730 _3233 Echvi_3234: Echvi_3234 - hypothetical protein, at 3,832,747 to 3,833,244 _3234 Echvi_3235: Echvi_3235 - Helicase conserved C-terminal domain./SNF2 family N-terminal domain., at 3,833,325 to 3,838,724 _3235 Position (kb) 3832 3833Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3831.621 kb on - strandat 3831.622 kb on + strandat 3831.622 kb on + strandat 3831.625 kb on + strandat 3831.626 kb on - strandat 3831.628 kb on + strandat 3831.655 kb on + strandat 3831.667 kb on - strandat 3831.667 kb on - strandat 3831.667 kb on - strandat 3831.667 kb on - strandat 3831.667 kb on - strandat 3831.717 kb on - strandat 3831.830 kb on - strand, within Echvi_3232at 3831.830 kb on - strand, within Echvi_3232at 3831.867 kb on + strand, within Echvi_3232at 3831.950 kb on + strand, within Echvi_3232at 3831.952 kb on + strand, within Echvi_3232at 3831.970 kb on - strand, within Echvi_3232at 3831.987 kb on - strand, within Echvi_3232at 3831.995 kb on - strand, within Echvi_3232at 3832.068 kb on - strand, within Echvi_3232at 3832.074 kb on - strand, within Echvi_3232at 3832.076 kb on + strand, within Echvi_3232at 3832.095 kb on - strand, within Echvi_3232at 3832.095 kb on - strand, within Echvi_3232at 3832.133 kb on + strand, within Echvi_3232at 3832.146 kb on + strand, within Echvi_3232at 3832.147 kb on - strand, within Echvi_3232at 3832.154 kb on + strand, within Echvi_3232at 3832.154 kb on + strand, within Echvi_3232at 3832.154 kb on + strand, within Echvi_3232at 3832.155 kb on - strand, within Echvi_3232at 3832.157 kb on + strand, within Echvi_3232at 3832.157 kb on + strand, within Echvi_3232at 3832.157 kb on + strand, within Echvi_3232at 3832.157 kb on + strand, within Echvi_3232at 3832.158 kb on - strand, within Echvi_3232at 3832.158 kb on - strand, within Echvi_3232at 3832.158 kb on - strand, within Echvi_3232at 3832.158 kb on - strand, within Echvi_3232at 3832.158 kb on - strand, within Echvi_3232at 3832.160 kb on - strand, within Echvi_3232at 3832.160 kb on - strand, within Echvi_3232at 3832.197 kb on - strand, within Echvi_3232at 3832.197 kb on - strand, within Echvi_3232at 3832.198 kb on + strand, within Echvi_3232at 3832.198 kb on + strand, within Echvi_3232at 3832.198 kb on + strand, within Echvi_3232at 3832.198 kb on + strand, within Echvi_3232at 3832.199 kb on - strand, within Echvi_3232at 3832.199 kb on - strand, within Echvi_3232at 3832.236 kb on + strand, within Echvi_3232at 3832.236 kb on + strand, within Echvi_3232at 3832.236 kb on + strand, within Echvi_3232at 3832.236 kb on + strand, within Echvi_3232at 3832.236 kb on + strand, within Echvi_3232at 3832.236 kb on + strand, within Echvi_3232at 3832.236 kb on + strand, within Echvi_3232at 3832.237 kb on - strand, within Echvi_3232at 3832.237 kb on - strand, within Echvi_3232at 3832.237 kb on - strand, within Echvi_3232at 3832.237 kb on - strand, within Echvi_3232at 3832.237 kb on - strand, within Echvi_3232at 3832.237 kb on - strand, within Echvi_3232at 3832.237 kb on - strand, within Echvi_3232at 3832.237 kb on - strand, within Echvi_3232at 3832.238 kb on + strand, within Echvi_3232at 3832.238 kb on + strand, within Echvi_3232at 3832.238 kb on + strand, within Echvi_3232at 3832.239 kb on - strand, within Echvi_3232at 3832.259 kb on - strand, within Echvi_3232at 3832.343 kb on + strand, within Echvi_3232at 3832.343 kb on + strand, within Echvi_3232at 3832.344 kb on - strand, within Echvi_3232at 3832.365 kb on + strand, within Echvi_3232at 3832.366 kb on - strand, within Echvi_3232at 3832.390 kb on - strand, within Echvi_3232at 3832.390 kb on - strand, within Echvi_3232at 3832.390 kb on - strand, within Echvi_3232at 3832.450 kb on + strand, within Echvi_3232at 3832.454 kb on + strand, within Echvi_3232at 3832.455 kb on - strand, within Echvi_3232at 3832.581 kb on - strand, within Echvi_3233at 3832.592 kb on + strand, within Echvi_3233at 3832.593 kb on - strand, within Echvi_3233at 3832.600 kb on - strand, within Echvi_3233at 3832.686 kb on - strand, within Echvi_3233at 3832.692 kb on + strand, within Echvi_3233at 3832.693 kb on - strand, within Echvi_3233at 3832.693 kb on - strand, within Echvi_3233at 3832.742 kb on + strandat 3832.743 kb on - strandat 3832.820 kb on + strand, within Echvi_3234at 3832.821 kb on - strand, within Echvi_3234at 3832.861 kb on - strand, within Echvi_3234at 3832.959 kb on + strand, within Echvi_3234at 3832.960 kb on - strand, within Echvi_3234at 3832.968 kb on + strand, within Echvi_3234at 3832.968 kb on + strand, within Echvi_3234at 3832.968 kb on + strand, within Echvi_3234at 3832.968 kb on + strand, within Echvi_3234at 3832.968 kb on + strand, within Echvi_3234at 3832.968 kb on + strand, within Echvi_3234at 3832.968 kb on + strand, within Echvi_3234at 3832.969 kb on - strand, within Echvi_3234at 3832.969 kb on - strand, within Echvi_3234at 3832.969 kb on - strand, within Echvi_3234at 3832.969 kb on - strand, within Echvi_3234at 3832.969 kb on - strand, within Echvi_3234at 3832.969 kb on - strand, within Echvi_3234at 3832.970 kb on + strand, within Echvi_3234at 3832.971 kb on - strand, within Echvi_3234at 3832.971 kb on - strand, within Echvi_3234at 3833.033 kb on - strand, within Echvi_3234at 3833.034 kb on + strand, within Echvi_3234at 3833.034 kb on + strand, within Echvi_3234at 3833.035 kb on - strand, within Echvi_3234at 3833.045 kb on + strand, within Echvi_3234at 3833.045 kb on + strand, within Echvi_3234at 3833.045 kb on + strand, within Echvi_3234at 3833.045 kb on + strand, within Echvi_3234at 3833.045 kb on + strand, within Echvi_3234at 3833.046 kb on - strand, within Echvi_3234at 3833.047 kb on + strand, within Echvi_3234at 3833.067 kb on + strand, within Echvi_3234at 3833.067 kb on + strand, within Echvi_3234at 3833.132 kb on + strand, within Echvi_3234at 3833.166 kb on + strand, within Echvi_3234at 3833.176 kb on + strand, within Echvi_3234at 3833.176 kb on + strand, within Echvi_3234at 3833.176 kb on + strand, within Echvi_3234at 3833.176 kb on + strand, within Echvi_3234at 3833.176 kb on + strand, within Echvi_3234at 3833.176 kb on + strand, within Echvi_3234at 3833.176 kb on + strand, within Echvi_3234at 3833.177 kb on - strand, within Echvi_3234at 3833.177 kb on - strand, within Echvi_3234at 3833.177 kb on - strand, within Echvi_3234at 3833.177 kb on - strand, within Echvi_3234at 3833.177 kb on - strand, within Echvi_3234at 3833.177 kb on - strand, within Echvi_3234at 3833.177 kb on - strand, within Echvi_3234at 3833.177 kb on - strand, within Echvi_3234at 3833.177 kb on - strand, within Echvi_3234at 3833.177 kb on - strand, within Echvi_3234at 3833.177 kb on - strand, within Echvi_3234at 3833.197 kb on - strandat 3833.197 kb on - strandat 3833.254 kb on - strandat 3833.311 kb on + strandat 3833.312 kb on - strandat 3833.392 kb on - strandat 3833.439 kb on + strandat 3833.446 kb on - strandat 3833.479 kb on - strandat 3833.510 kb on + strandat 3833.511 kb on - strandat 3833.521 kb on - strandat 3833.521 kb on - strandat 3833.651 kb on + strandat 3833.660 kb on + strandat 3833.661 kb on - strandat 3833.663 kb on - strandat 3833.663 kb on - strandat 3833.663 kb on - strandat 3833.663 kb on - strandat 3833.663 kb on - strandat 3833.663 kb on - strandat 3833.676 kb on - strandat 3833.713 kb on - strandat 3833.713 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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3,831,621 - -0.5
3,831,622 + +0.1
3,831,622 + +0.5
3,831,625 + +0.2
3,831,626 - -0.7
3,831,628 + -0.2
3,831,655 + +0.7
3,831,667 - -1.2
3,831,667 - -0.1
3,831,667 - +0.8
3,831,667 - +0.4
3,831,667 - -0.3
3,831,717 - +0.2
3,831,830 - Echvi_3232 0.21 -0.4
3,831,830 - Echvi_3232 0.21 -1.2
3,831,867 + Echvi_3232 0.25 +0.5
3,831,950 + Echvi_3232 0.34 +0.2
3,831,952 + Echvi_3232 0.35 +0.4
3,831,970 - Echvi_3232 0.36 -0.2
3,831,987 - Echvi_3232 0.38 +0.4
3,831,995 - Echvi_3232 0.39 -0.2
3,832,068 - Echvi_3232 0.47 -0.0
3,832,074 - Echvi_3232 0.48 -0.4
3,832,076 + Echvi_3232 0.48 -0.5
3,832,095 - Echvi_3232 0.50 +1.3
3,832,095 - Echvi_3232 0.50 +0.8
3,832,133 + Echvi_3232 0.54 +1.0
3,832,146 + Echvi_3232 0.56 -0.4
3,832,147 - Echvi_3232 0.56 +0.9
3,832,154 + Echvi_3232 0.57 -0.3
3,832,154 + Echvi_3232 0.57 +0.1
3,832,154 + Echvi_3232 0.57 -0.4
3,832,155 - Echvi_3232 0.57 -0.7
3,832,157 + Echvi_3232 0.57 +1.3
3,832,157 + Echvi_3232 0.57 -0.2
3,832,157 + Echvi_3232 0.57 -0.3
3,832,157 + Echvi_3232 0.57 -0.6
3,832,158 - Echvi_3232 0.57 -0.0
3,832,158 - Echvi_3232 0.57 +0.3
3,832,158 - Echvi_3232 0.57 -0.1
3,832,158 - Echvi_3232 0.57 +2.0
3,832,158 - Echvi_3232 0.57 -2.3
3,832,160 - Echvi_3232 0.57 +1.5
3,832,160 - Echvi_3232 0.57 +0.7
3,832,197 - Echvi_3232 0.61 +0.2
3,832,197 - Echvi_3232 0.61 +0.4
3,832,198 + Echvi_3232 0.61 +0.9
3,832,198 + Echvi_3232 0.61 -0.5
3,832,198 + Echvi_3232 0.61 +0.3
3,832,198 + Echvi_3232 0.61 -0.5
3,832,199 - Echvi_3232 0.61 -1.2
3,832,199 - Echvi_3232 0.61 +1.5
3,832,236 + Echvi_3232 0.65 -0.2
3,832,236 + Echvi_3232 0.65 -0.7
3,832,236 + Echvi_3232 0.65 -0.7
3,832,236 + Echvi_3232 0.65 -0.9
3,832,236 + Echvi_3232 0.65 -0.2
3,832,236 + Echvi_3232 0.65 -0.8
3,832,236 + Echvi_3232 0.65 -0.2
3,832,237 - Echvi_3232 0.66 +0.3
3,832,237 - Echvi_3232 0.66 +0.8
3,832,237 - Echvi_3232 0.66 -0.6
3,832,237 - Echvi_3232 0.66 -1.8
3,832,237 - Echvi_3232 0.66 +0.0
3,832,237 - Echvi_3232 0.66 -0.1
3,832,237 - Echvi_3232 0.66 +0.1
3,832,237 - Echvi_3232 0.66 -1.4
3,832,238 + Echvi_3232 0.66 -0.8
3,832,238 + Echvi_3232 0.66 -0.5
3,832,238 + Echvi_3232 0.66 +1.1
3,832,239 - Echvi_3232 0.66 +3.8
3,832,259 - Echvi_3232 0.68 +0.3
3,832,343 + Echvi_3232 0.77 -0.1
3,832,343 + Echvi_3232 0.77 -1.3
3,832,344 - Echvi_3232 0.77 +1.1
3,832,365 + Echvi_3232 0.80 -0.3
3,832,366 - Echvi_3232 0.80 -3.4
3,832,390 - Echvi_3232 0.82 +0.1
3,832,390 - Echvi_3232 0.82 -0.8
3,832,390 - Echvi_3232 0.82 +0.7
3,832,450 + Echvi_3232 0.89 +0.6
3,832,454 + Echvi_3232 0.89 +1.1
3,832,455 - Echvi_3232 0.89 -0.2
3,832,581 - Echvi_3233 0.24 -0.2
3,832,592 + Echvi_3233 0.30 -0.2
3,832,593 - Echvi_3233 0.30 +0.8
3,832,600 - Echvi_3233 0.34 +0.7
3,832,686 - Echvi_3233 0.77 +0.1
3,832,692 + Echvi_3233 0.80 +0.9
3,832,693 - Echvi_3233 0.81 +0.1
3,832,693 - Echvi_3233 0.81 +0.2
3,832,742 + +0.0
3,832,743 - +0.3
3,832,820 + Echvi_3234 0.15 -0.9
3,832,821 - Echvi_3234 0.15 -1.1
3,832,861 - Echvi_3234 0.23 -0.3
3,832,959 + Echvi_3234 0.43 +0.2
3,832,960 - Echvi_3234 0.43 +0.2
3,832,968 + Echvi_3234 0.44 +0.4
3,832,968 + Echvi_3234 0.44 +1.2
3,832,968 + Echvi_3234 0.44 -0.2
3,832,968 + Echvi_3234 0.44 +0.0
3,832,968 + Echvi_3234 0.44 +0.5
3,832,968 + Echvi_3234 0.44 +0.9
3,832,968 + Echvi_3234 0.44 -0.4
3,832,969 - Echvi_3234 0.45 -0.8
3,832,969 - Echvi_3234 0.45 +0.2
3,832,969 - Echvi_3234 0.45 -1.0
3,832,969 - Echvi_3234 0.45 +0.3
3,832,969 - Echvi_3234 0.45 -0.5
3,832,969 - Echvi_3234 0.45 -0.5
3,832,970 + Echvi_3234 0.45 -0.7
3,832,971 - Echvi_3234 0.45 +0.7
3,832,971 - Echvi_3234 0.45 -0.5
3,833,033 - Echvi_3234 0.57 +0.2
3,833,034 + Echvi_3234 0.58 +1.0
3,833,034 + Echvi_3234 0.58 +1.5
3,833,035 - Echvi_3234 0.58 -1.2
3,833,045 + Echvi_3234 0.60 +1.4
3,833,045 + Echvi_3234 0.60 -0.8
3,833,045 + Echvi_3234 0.60 +0.1
3,833,045 + Echvi_3234 0.60 +1.8
3,833,045 + Echvi_3234 0.60 -0.1
3,833,046 - Echvi_3234 0.60 +0.6
3,833,047 + Echvi_3234 0.60 +0.8
3,833,067 + Echvi_3234 0.64 -0.2
3,833,067 + Echvi_3234 0.64 +0.0
3,833,132 + Echvi_3234 0.77 +0.1
3,833,166 + Echvi_3234 0.84 +2.0
3,833,176 + Echvi_3234 0.86 +1.1
3,833,176 + Echvi_3234 0.86 -2.3
3,833,176 + Echvi_3234 0.86 +0.1
3,833,176 + Echvi_3234 0.86 -0.1
3,833,176 + Echvi_3234 0.86 -0.8
3,833,176 + Echvi_3234 0.86 -1.4
3,833,176 + Echvi_3234 0.86 +0.4
3,833,177 - Echvi_3234 0.86 -0.5
3,833,177 - Echvi_3234 0.86 -0.2
3,833,177 - Echvi_3234 0.86 -0.4
3,833,177 - Echvi_3234 0.86 +1.5
3,833,177 - Echvi_3234 0.86 -0.5
3,833,177 - Echvi_3234 0.86 +0.8
3,833,177 - Echvi_3234 0.86 -0.1
3,833,177 - Echvi_3234 0.86 -1.0
3,833,177 - Echvi_3234 0.86 +0.1
3,833,177 - Echvi_3234 0.86 +0.5
3,833,177 - Echvi_3234 0.86 -0.6
3,833,197 - -0.3
3,833,197 - -0.0
3,833,254 - +0.5
3,833,311 + -0.6
3,833,312 - -0.1
3,833,392 - -0.7
3,833,439 + +0.4
3,833,446 - -0.2
3,833,479 - -0.8
3,833,510 + -0.7
3,833,511 - +0.2
3,833,521 - +0.6
3,833,521 - -0.3
3,833,651 + -0.2
3,833,660 + -0.0
3,833,661 - -0.2
3,833,663 - -0.4
3,833,663 - -0.4
3,833,663 - -0.8
3,833,663 - -0.1
3,833,663 - -0.6
3,833,663 - -1.4
3,833,676 - +0.9
3,833,713 - +0.3
3,833,713 - +0.7

Or see this region's nucleotide sequence