Experiment: m.b. benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1883 and Echvi_1884 are separated by 164 nucleotides Echvi_1884 and Echvi_1885 are separated by 0 nucleotides Echvi_1885 and Echvi_1886 overlap by 4 nucleotides
Echvi_1883: Echvi_1883 - C-terminal peptidase (prc), at 2,210,611 to 2,212,290
_1883
Echvi_1884: Echvi_1884 - Regulator of cell morphogenesis and NO signaling, at 2,212,455 to 2,213,213
_1884
Echvi_1885: Echvi_1885 - RNAse H-fold protein YqgF, at 2,213,214 to 2,213,627
_1885
Echvi_1886: Echvi_1886 - peptide deformylase, at 2,213,624 to 2,214,178
_1886
Position (kb)
2212
2213
2214 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2211.458 kb on - strand, within Echvi_1883 at 2211.515 kb on + strand, within Echvi_1883 at 2211.602 kb on + strand, within Echvi_1883 at 2211.602 kb on + strand, within Echvi_1883 at 2211.603 kb on - strand, within Echvi_1883 at 2211.603 kb on - strand, within Echvi_1883 at 2211.607 kb on - strand, within Echvi_1883 at 2211.636 kb on - strand, within Echvi_1883 at 2211.659 kb on + strand, within Echvi_1883 at 2211.660 kb on - strand, within Echvi_1883 at 2211.678 kb on - strand, within Echvi_1883 at 2211.678 kb on - strand, within Echvi_1883 at 2211.690 kb on + strand, within Echvi_1883 at 2211.745 kb on + strand, within Echvi_1883 at 2211.745 kb on + strand, within Echvi_1883 at 2211.746 kb on - strand, within Echvi_1883 at 2211.775 kb on + strand, within Echvi_1883 at 2211.776 kb on - strand, within Echvi_1883 at 2211.776 kb on - strand, within Echvi_1883 at 2211.832 kb on + strand, within Echvi_1883 at 2211.866 kb on - strand, within Echvi_1883 at 2211.902 kb on - strand, within Echvi_1883 at 2211.905 kb on + strand, within Echvi_1883 at 2211.905 kb on + strand, within Echvi_1883 at 2211.905 kb on + strand, within Echvi_1883 at 2211.905 kb on + strand, within Echvi_1883 at 2211.999 kb on + strand, within Echvi_1883 at 2212.000 kb on - strand, within Echvi_1883 at 2212.001 kb on + strand, within Echvi_1883 at 2212.001 kb on + strand, within Echvi_1883 at 2212.001 kb on + strand, within Echvi_1883 at 2212.001 kb on + strand, within Echvi_1883 at 2212.002 kb on - strand, within Echvi_1883 at 2212.002 kb on - strand, within Echvi_1883 at 2212.065 kb on + strand, within Echvi_1883 at 2212.082 kb on + strand, within Echvi_1883 at 2212.083 kb on - strand, within Echvi_1883 at 2212.095 kb on + strand, within Echvi_1883 at 2212.097 kb on + strand, within Echvi_1883 at 2212.097 kb on + strand, within Echvi_1883 at 2212.097 kb on + strand, within Echvi_1883 at 2212.346 kb on + strand at 2212.353 kb on + strand at 2212.379 kb on + strand at 2212.380 kb on - strand at 2212.452 kb on + strand at 2212.453 kb on - strand at 2212.463 kb on + strand at 2212.498 kb on + strand at 2212.498 kb on + strand at 2212.498 kb on + strand at 2212.531 kb on + strand, within Echvi_1884 at 2212.560 kb on + strand, within Echvi_1884 at 2212.560 kb on + strand, within Echvi_1884 at 2212.603 kb on + strand at 2212.674 kb on + strand, within Echvi_1884 at 2212.791 kb on + strand, within Echvi_1884 at 2212.792 kb on - strand, within Echvi_1884 at 2212.792 kb on - strand, within Echvi_1884 at 2212.909 kb on + strand, within Echvi_1884 at 2212.931 kb on - strand, within Echvi_1884 at 2213.045 kb on - strand, within Echvi_1884 at 2213.079 kb on + strand, within Echvi_1884 at 2213.602 kb on + strand at 2213.602 kb on + strand at 2213.623 kb on + strand at 2213.623 kb on + strand at 2214.177 kb on - strand at 2214.179 kb on + strand at 2214.180 kb on - strand at 2214.180 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml remove 2,211,458 - Echvi_1883 0.50 +2.1 2,211,515 + Echvi_1883 0.54 -0.6 2,211,602 + Echvi_1883 0.59 +2.2 2,211,602 + Echvi_1883 0.59 +2.2 2,211,603 - Echvi_1883 0.59 -0.8 2,211,603 - Echvi_1883 0.59 +1.0 2,211,607 - Echvi_1883 0.59 +0.9 2,211,636 - Echvi_1883 0.61 +0.0 2,211,659 + Echvi_1883 0.62 -0.6 2,211,660 - Echvi_1883 0.62 -0.5 2,211,678 - Echvi_1883 0.64 -0.1 2,211,678 - Echvi_1883 0.64 +0.7 2,211,690 + Echvi_1883 0.64 -0.3 2,211,745 + Echvi_1883 0.68 +1.0 2,211,745 + Echvi_1883 0.68 +1.0 2,211,746 - Echvi_1883 0.68 +1.2 2,211,775 + Echvi_1883 0.69 +0.9 2,211,776 - Echvi_1883 0.69 +0.4 2,211,776 - Echvi_1883 0.69 +0.7 2,211,832 + Echvi_1883 0.73 -0.3 2,211,866 - Echvi_1883 0.75 -0.2 2,211,902 - Echvi_1883 0.77 -1.3 2,211,905 + Echvi_1883 0.77 -0.2 2,211,905 + Echvi_1883 0.77 +0.1 2,211,905 + Echvi_1883 0.77 -0.6 2,211,905 + Echvi_1883 0.77 -0.3 2,211,999 + Echvi_1883 0.83 +0.7 2,212,000 - Echvi_1883 0.83 -1.3 2,212,001 + Echvi_1883 0.83 -0.7 2,212,001 + Echvi_1883 0.83 -0.4 2,212,001 + Echvi_1883 0.83 -0.6 2,212,001 + Echvi_1883 0.83 +1.3 2,212,002 - Echvi_1883 0.83 -0.5 2,212,002 - Echvi_1883 0.83 -0.5 2,212,065 + Echvi_1883 0.87 +1.1 2,212,082 + Echvi_1883 0.88 +0.5 2,212,083 - Echvi_1883 0.88 -0.1 2,212,095 + Echvi_1883 0.88 -0.3 2,212,097 + Echvi_1883 0.88 -1.0 2,212,097 + Echvi_1883 0.88 -0.0 2,212,097 + Echvi_1883 0.88 -0.9 2,212,346 + +0.4 2,212,353 + -0.2 2,212,379 + -1.8 2,212,380 - -0.3 2,212,452 + +1.0 2,212,453 - -0.1 2,212,463 + +1.7 2,212,498 + +0.6 2,212,498 + +0.6 2,212,498 + +1.1 2,212,531 + Echvi_1884 0.10 -0.3 2,212,560 + Echvi_1884 0.14 +0.6 2,212,560 + Echvi_1884 0.14 -0.3 2,212,603 + +0.7 2,212,674 + Echvi_1884 0.29 -2.2 2,212,791 + Echvi_1884 0.44 +0.0 2,212,792 - Echvi_1884 0.44 -0.9 2,212,792 - Echvi_1884 0.44 -1.1 2,212,909 + Echvi_1884 0.60 -0.7 2,212,931 - Echvi_1884 0.63 +1.1 2,213,045 - Echvi_1884 0.78 -0.6 2,213,079 + Echvi_1884 0.82 -1.7 2,213,602 + -0.8 2,213,602 + -1.4 2,213,623 + +0.2 2,213,623 + -0.5 2,214,177 - +0.7 2,214,179 + +0.7 2,214,180 - +0.7 2,214,180 - -0.3
Or see this region's nucleotide sequence