Experiment: m.b. benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1367 and Echvi_1368 are separated by 252 nucleotides Echvi_1368 and Echvi_1369 are separated by 60 nucleotides
Echvi_1367: Echvi_1367 - RteC protein., at 1,571,462 to 1,572,307
_1367
Echvi_1368: Echvi_1368 - hypothetical protein, at 1,572,560 to 1,572,925
_1368
Echvi_1369: Echvi_1369 - Response regulator of the LytR/AlgR family, at 1,572,986 to 1,573,888
_1369
Position (kb)
1572
1573 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1571.589 kb on + strand, within Echvi_1367 at 1571.592 kb on + strand, within Echvi_1367 at 1571.592 kb on + strand, within Echvi_1367 at 1571.602 kb on + strand, within Echvi_1367 at 1571.603 kb on - strand, within Echvi_1367 at 1571.670 kb on - strand, within Echvi_1367 at 1571.691 kb on + strand, within Echvi_1367 at 1571.692 kb on - strand, within Echvi_1367 at 1571.695 kb on + strand, within Echvi_1367 at 1571.696 kb on - strand, within Echvi_1367 at 1571.769 kb on - strand, within Echvi_1367 at 1571.925 kb on + strand, within Echvi_1367 at 1571.958 kb on + strand, within Echvi_1367 at 1571.958 kb on + strand, within Echvi_1367 at 1571.958 kb on + strand, within Echvi_1367 at 1571.959 kb on - strand, within Echvi_1367 at 1571.959 kb on - strand, within Echvi_1367 at 1571.959 kb on - strand, within Echvi_1367 at 1571.964 kb on + strand, within Echvi_1367 at 1572.045 kb on - strand, within Echvi_1367 at 1572.066 kb on + strand, within Echvi_1367 at 1572.066 kb on + strand, within Echvi_1367 at 1572.067 kb on - strand, within Echvi_1367 at 1572.067 kb on - strand, within Echvi_1367 at 1572.067 kb on - strand, within Echvi_1367 at 1572.067 kb on - strand, within Echvi_1367 at 1572.070 kb on - strand, within Echvi_1367 at 1572.081 kb on + strand, within Echvi_1367 at 1572.085 kb on - strand, within Echvi_1367 at 1572.176 kb on + strand, within Echvi_1367 at 1572.261 kb on - strand at 1572.282 kb on + strand at 1572.283 kb on - strand at 1572.315 kb on - strand at 1572.315 kb on - strand at 1572.315 kb on - strand at 1572.315 kb on - strand at 1572.391 kb on + strand at 1572.391 kb on + strand at 1572.507 kb on + strand at 1572.508 kb on - strand at 1572.527 kb on + strand at 1572.552 kb on - strand at 1572.631 kb on + strand, within Echvi_1368 at 1572.631 kb on + strand, within Echvi_1368 at 1572.739 kb on + strand, within Echvi_1368 at 1572.739 kb on + strand, within Echvi_1368 at 1572.740 kb on - strand, within Echvi_1368 at 1572.802 kb on + strand, within Echvi_1368 at 1572.802 kb on + strand, within Echvi_1368 at 1572.947 kb on - strand at 1572.947 kb on - strand at 1572.949 kb on + strand at 1572.949 kb on + strand at 1572.955 kb on + strand at 1573.000 kb on + strand at 1573.000 kb on + strand at 1573.000 kb on + strand at 1573.000 kb on + strand at 1573.001 kb on - strand at 1573.005 kb on - strand at 1573.012 kb on + strand at 1573.013 kb on - strand at 1573.013 kb on - strand at 1573.039 kb on + strand at 1573.040 kb on - strand at 1573.101 kb on + strand, within Echvi_1369 at 1573.107 kb on - strand, within Echvi_1369 at 1573.269 kb on - strand, within Echvi_1369 at 1573.273 kb on + strand, within Echvi_1369 at 1573.274 kb on - strand, within Echvi_1369 at 1573.276 kb on + strand, within Echvi_1369 at 1573.296 kb on - strand, within Echvi_1369 at 1573.296 kb on - strand, within Echvi_1369 at 1573.299 kb on - strand, within Echvi_1369 at 1573.394 kb on + strand, within Echvi_1369 at 1573.407 kb on - strand, within Echvi_1369 at 1573.434 kb on - strand, within Echvi_1369 at 1573.437 kb on - strand, within Echvi_1369 at 1573.437 kb on - strand, within Echvi_1369 at 1573.437 kb on - strand, within Echvi_1369 at 1573.446 kb on - strand, within Echvi_1369 at 1573.506 kb on - strand, within Echvi_1369 at 1573.605 kb on + strand, within Echvi_1369 at 1573.617 kb on - strand, within Echvi_1369 at 1573.620 kb on + strand, within Echvi_1369 at 1573.620 kb on + strand, within Echvi_1369 at 1573.620 kb on + strand, within Echvi_1369 at 1573.621 kb on - strand, within Echvi_1369 at 1573.682 kb on + strand, within Echvi_1369 at 1573.808 kb on + strand at 1573.829 kb on - strand at 1573.829 kb on - strand at 1573.834 kb on + strand at 1573.835 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml remove 1,571,589 + Echvi_1367 0.15 -0.1 1,571,592 + Echvi_1367 0.15 -0.4 1,571,592 + Echvi_1367 0.15 +0.0 1,571,602 + Echvi_1367 0.17 +0.2 1,571,603 - Echvi_1367 0.17 -1.3 1,571,670 - Echvi_1367 0.25 -0.9 1,571,691 + Echvi_1367 0.27 -0.2 1,571,692 - Echvi_1367 0.27 -1.1 1,571,695 + Echvi_1367 0.28 +0.4 1,571,696 - Echvi_1367 0.28 -2.1 1,571,769 - Echvi_1367 0.36 -1.5 1,571,925 + Echvi_1367 0.55 +1.2 1,571,958 + Echvi_1367 0.59 -0.1 1,571,958 + Echvi_1367 0.59 -0.6 1,571,958 + Echvi_1367 0.59 -1.1 1,571,959 - Echvi_1367 0.59 +0.9 1,571,959 - Echvi_1367 0.59 -0.5 1,571,959 - Echvi_1367 0.59 -0.3 1,571,964 + Echvi_1367 0.59 -0.6 1,572,045 - Echvi_1367 0.69 +0.4 1,572,066 + Echvi_1367 0.71 +0.1 1,572,066 + Echvi_1367 0.71 +0.5 1,572,067 - Echvi_1367 0.72 -0.6 1,572,067 - Echvi_1367 0.72 +0.2 1,572,067 - Echvi_1367 0.72 +0.4 1,572,067 - Echvi_1367 0.72 -0.5 1,572,070 - Echvi_1367 0.72 +0.3 1,572,081 + Echvi_1367 0.73 +0.3 1,572,085 - Echvi_1367 0.74 -0.0 1,572,176 + Echvi_1367 0.84 -0.7 1,572,261 - +1.3 1,572,282 + -0.5 1,572,283 - +0.5 1,572,315 - -0.4 1,572,315 - -0.2 1,572,315 - +2.9 1,572,315 - -0.1 1,572,391 + +0.1 1,572,391 + +0.0 1,572,507 + -0.8 1,572,508 - -0.2 1,572,527 + +0.3 1,572,552 - +1.3 1,572,631 + Echvi_1368 0.19 +0.1 1,572,631 + Echvi_1368 0.19 -1.2 1,572,739 + Echvi_1368 0.49 -0.3 1,572,739 + Echvi_1368 0.49 -0.2 1,572,740 - Echvi_1368 0.49 -0.4 1,572,802 + Echvi_1368 0.66 +1.4 1,572,802 + Echvi_1368 0.66 -1.4 1,572,947 - -3.2 1,572,947 - -0.8 1,572,949 + +1.2 1,572,949 + -0.1 1,572,955 + +0.9 1,573,000 + -0.5 1,573,000 + +0.0 1,573,000 + +1.1 1,573,000 + +0.2 1,573,001 - -0.3 1,573,005 - -0.7 1,573,012 + -1.5 1,573,013 - -0.5 1,573,013 - +0.3 1,573,039 + +0.7 1,573,040 - +1.3 1,573,101 + Echvi_1369 0.13 -0.9 1,573,107 - Echvi_1369 0.13 +0.6 1,573,269 - Echvi_1369 0.31 -1.1 1,573,273 + Echvi_1369 0.32 -0.9 1,573,274 - Echvi_1369 0.32 -0.0 1,573,276 + Echvi_1369 0.32 +1.2 1,573,296 - Echvi_1369 0.34 -0.1 1,573,296 - Echvi_1369 0.34 +1.2 1,573,299 - Echvi_1369 0.35 +1.2 1,573,394 + Echvi_1369 0.45 -1.3 1,573,407 - Echvi_1369 0.47 +0.9 1,573,434 - Echvi_1369 0.50 -1.8 1,573,437 - Echvi_1369 0.50 -0.3 1,573,437 - Echvi_1369 0.50 -0.1 1,573,437 - Echvi_1369 0.50 -1.0 1,573,446 - Echvi_1369 0.51 +0.1 1,573,506 - Echvi_1369 0.58 -0.3 1,573,605 + Echvi_1369 0.69 +0.1 1,573,617 - Echvi_1369 0.70 +1.0 1,573,620 + Echvi_1369 0.70 -0.5 1,573,620 + Echvi_1369 0.70 -0.7 1,573,620 + Echvi_1369 0.70 +0.6 1,573,621 - Echvi_1369 0.70 -0.2 1,573,682 + Echvi_1369 0.77 -0.3 1,573,808 + +0.9 1,573,829 - -1.4 1,573,829 - +0.1 1,573,834 + -0.7 1,573,835 - -0.3
Or see this region's nucleotide sequence