Experiment: m.b. benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1359 and Echvi_1360 overlap by 14 nucleotides Echvi_1360 and Echvi_1361 overlap by 11 nucleotides Echvi_1361 and Echvi_1362 are separated by 3 nucleotides
Echvi_1359: Echvi_1359 - hypothetical protein, at 1,565,446 to 1,566,084
_1359
Echvi_1360: Echvi_1360 - hypothetical protein, at 1,566,071 to 1,566,718
_1360
Echvi_1361: Echvi_1361 - hypothetical protein, at 1,566,708 to 1,567,394
_1361
Echvi_1362: Echvi_1362 - Bacteroides conjugation system ATPase, TraG family, at 1,567,398 to 1,569,860
_1362
Position (kb)
1566
1567
1568 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1565.760 kb on - strand, within Echvi_1359 at 1565.773 kb on - strand, within Echvi_1359 at 1565.773 kb on - strand, within Echvi_1359 at 1565.808 kb on - strand, within Echvi_1359 at 1565.870 kb on + strand, within Echvi_1359 at 1565.870 kb on + strand, within Echvi_1359 at 1565.871 kb on - strand, within Echvi_1359 at 1565.871 kb on - strand, within Echvi_1359 at 1565.871 kb on - strand, within Echvi_1359 at 1565.904 kb on - strand, within Echvi_1359 at 1565.933 kb on + strand, within Echvi_1359 at 1565.933 kb on + strand, within Echvi_1359 at 1565.934 kb on - strand, within Echvi_1359 at 1565.934 kb on - strand, within Echvi_1359 at 1566.087 kb on + strand at 1566.088 kb on - strand at 1566.099 kb on - strand at 1566.099 kb on - strand at 1566.161 kb on - strand, within Echvi_1360 at 1566.180 kb on + strand, within Echvi_1360 at 1566.199 kb on + strand, within Echvi_1360 at 1566.205 kb on + strand, within Echvi_1360 at 1566.205 kb on + strand, within Echvi_1360 at 1566.205 kb on + strand, within Echvi_1360 at 1566.206 kb on - strand, within Echvi_1360 at 1566.206 kb on - strand, within Echvi_1360 at 1566.206 kb on - strand, within Echvi_1360 at 1566.206 kb on - strand, within Echvi_1360 at 1566.265 kb on + strand, within Echvi_1360 at 1566.394 kb on - strand, within Echvi_1360 at 1566.394 kb on - strand, within Echvi_1360 at 1566.400 kb on + strand, within Echvi_1360 at 1566.400 kb on + strand, within Echvi_1360 at 1566.402 kb on + strand, within Echvi_1360 at 1566.402 kb on + strand, within Echvi_1360 at 1566.402 kb on + strand, within Echvi_1360 at 1566.402 kb on + strand, within Echvi_1360 at 1566.402 kb on + strand, within Echvi_1360 at 1566.402 kb on + strand, within Echvi_1360 at 1566.402 kb on + strand, within Echvi_1360 at 1566.403 kb on - strand, within Echvi_1360 at 1566.403 kb on - strand, within Echvi_1360 at 1566.403 kb on - strand, within Echvi_1360 at 1566.403 kb on - strand, within Echvi_1360 at 1566.403 kb on - strand, within Echvi_1360 at 1566.403 kb on - strand, within Echvi_1360 at 1566.403 kb on - strand, within Echvi_1360 at 1566.403 kb on - strand, within Echvi_1360 at 1566.403 kb on - strand, within Echvi_1360 at 1566.575 kb on - strand, within Echvi_1360 at 1566.575 kb on - strand, within Echvi_1360 at 1566.576 kb on + strand, within Echvi_1360 at 1566.577 kb on - strand, within Echvi_1360 at 1566.602 kb on + strand, within Echvi_1360 at 1566.603 kb on - strand, within Echvi_1360 at 1566.603 kb on - strand, within Echvi_1360 at 1566.609 kb on + strand, within Echvi_1360 at 1566.661 kb on - strand at 1566.689 kb on + strand at 1566.702 kb on + strand at 1566.702 kb on + strand at 1566.702 kb on + strand at 1566.702 kb on + strand at 1566.702 kb on + strand at 1566.702 kb on + strand at 1566.702 kb on + strand at 1566.703 kb on - strand at 1566.703 kb on - strand at 1566.703 kb on - strand at 1566.718 kb on + strand at 1566.888 kb on + strand, within Echvi_1361 at 1566.888 kb on + strand, within Echvi_1361 at 1566.889 kb on - strand, within Echvi_1361 at 1566.889 kb on - strand, within Echvi_1361 at 1566.889 kb on - strand, within Echvi_1361 at 1566.889 kb on - strand, within Echvi_1361 at 1566.941 kb on - strand, within Echvi_1361 at 1567.087 kb on - strand, within Echvi_1361 at 1567.087 kb on - strand, within Echvi_1361 at 1567.117 kb on + strand, within Echvi_1361 at 1567.118 kb on - strand, within Echvi_1361 at 1567.378 kb on + strand at 1567.379 kb on - strand at 1567.379 kb on - strand at 1567.379 kb on - strand at 1567.379 kb on - strand at 1567.394 kb on + strand at 1567.394 kb on + strand at 1567.395 kb on - strand at 1567.399 kb on + strand at 1567.400 kb on - strand at 1567.400 kb on - strand at 1567.496 kb on + strand at 1567.498 kb on + strand at 1567.498 kb on + strand at 1567.499 kb on - strand at 1567.508 kb on - strand at 1567.681 kb on + strand, within Echvi_1362 at 1567.681 kb on + strand, within Echvi_1362 at 1567.682 kb on - strand, within Echvi_1362 at 1567.814 kb on + strand, within Echvi_1362 at 1567.822 kb on + strand, within Echvi_1362 at 1567.822 kb on + strand, within Echvi_1362 at 1567.937 kb on + strand, within Echvi_1362 at 1567.937 kb on + strand, within Echvi_1362 at 1568.014 kb on - strand, within Echvi_1362 at 1568.068 kb on + strand, within Echvi_1362 at 1568.069 kb on - strand, within Echvi_1362 at 1568.071 kb on + strand, within Echvi_1362 at 1568.079 kb on + strand, within Echvi_1362 at 1568.082 kb on + strand, within Echvi_1362 at 1568.082 kb on + strand, within Echvi_1362 at 1568.082 kb on + strand, within Echvi_1362 at 1568.083 kb on - strand, within Echvi_1362 at 1568.086 kb on + strand, within Echvi_1362 at 1568.086 kb on + strand, within Echvi_1362 at 1568.086 kb on + strand, within Echvi_1362 at 1568.086 kb on + strand, within Echvi_1362 at 1568.087 kb on - strand, within Echvi_1362 at 1568.165 kb on - strand, within Echvi_1362 at 1568.171 kb on - strand, within Echvi_1362 at 1568.181 kb on - strand, within Echvi_1362 at 1568.221 kb on + strand, within Echvi_1362 at 1568.221 kb on + strand, within Echvi_1362 at 1568.224 kb on + strand, within Echvi_1362 at 1568.250 kb on + strand, within Echvi_1362 at 1568.250 kb on + strand, within Echvi_1362 at 1568.250 kb on + strand, within Echvi_1362 at 1568.251 kb on - strand, within Echvi_1362 at 1568.251 kb on - strand, within Echvi_1362 at 1568.254 kb on + strand, within Echvi_1362
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml remove 1,565,760 - Echvi_1359 0.49 +0.9 1,565,773 - Echvi_1359 0.51 +0.5 1,565,773 - Echvi_1359 0.51 -0.4 1,565,808 - Echvi_1359 0.57 -1.1 1,565,870 + Echvi_1359 0.66 +0.9 1,565,870 + Echvi_1359 0.66 -0.5 1,565,871 - Echvi_1359 0.67 -0.0 1,565,871 - Echvi_1359 0.67 -0.6 1,565,871 - Echvi_1359 0.67 -1.5 1,565,904 - Echvi_1359 0.72 -0.3 1,565,933 + Echvi_1359 0.76 -0.5 1,565,933 + Echvi_1359 0.76 +0.5 1,565,934 - Echvi_1359 0.76 -0.8 1,565,934 - Echvi_1359 0.76 +0.3 1,566,087 + +0.7 1,566,088 - -1.0 1,566,099 - -0.6 1,566,099 - +1.3 1,566,161 - Echvi_1360 0.14 +0.3 1,566,180 + Echvi_1360 0.17 -0.7 1,566,199 + Echvi_1360 0.20 -1.0 1,566,205 + Echvi_1360 0.21 -1.8 1,566,205 + Echvi_1360 0.21 -1.2 1,566,205 + Echvi_1360 0.21 +0.2 1,566,206 - Echvi_1360 0.21 -0.3 1,566,206 - Echvi_1360 0.21 -0.7 1,566,206 - Echvi_1360 0.21 -0.0 1,566,206 - Echvi_1360 0.21 -3.1 1,566,265 + Echvi_1360 0.30 -0.1 1,566,394 - Echvi_1360 0.50 -1.1 1,566,394 - Echvi_1360 0.50 -0.1 1,566,400 + Echvi_1360 0.51 -1.6 1,566,400 + Echvi_1360 0.51 +0.3 1,566,402 + Echvi_1360 0.51 -1.5 1,566,402 + Echvi_1360 0.51 -0.4 1,566,402 + Echvi_1360 0.51 -0.0 1,566,402 + Echvi_1360 0.51 +0.7 1,566,402 + Echvi_1360 0.51 -1.4 1,566,402 + Echvi_1360 0.51 +0.1 1,566,402 + Echvi_1360 0.51 +1.2 1,566,403 - Echvi_1360 0.51 -0.3 1,566,403 - Echvi_1360 0.51 -1.6 1,566,403 - Echvi_1360 0.51 +0.9 1,566,403 - Echvi_1360 0.51 -2.0 1,566,403 - Echvi_1360 0.51 +0.9 1,566,403 - Echvi_1360 0.51 +0.6 1,566,403 - Echvi_1360 0.51 +0.3 1,566,403 - Echvi_1360 0.51 -0.6 1,566,403 - Echvi_1360 0.51 -0.3 1,566,575 - Echvi_1360 0.78 +1.4 1,566,575 - Echvi_1360 0.78 -1.3 1,566,576 + Echvi_1360 0.78 +1.9 1,566,577 - Echvi_1360 0.78 -0.3 1,566,602 + Echvi_1360 0.82 +0.1 1,566,603 - Echvi_1360 0.82 +1.3 1,566,603 - Echvi_1360 0.82 +1.4 1,566,609 + Echvi_1360 0.83 +0.2 1,566,661 - -2.1 1,566,689 + +0.4 1,566,702 + +0.0 1,566,702 + +1.3 1,566,702 + +0.3 1,566,702 + +0.7 1,566,702 + +0.0 1,566,702 + -0.2 1,566,702 + -0.9 1,566,703 - +1.1 1,566,703 - -0.7 1,566,703 - -0.9 1,566,718 + -1.2 1,566,888 + Echvi_1361 0.26 -0.3 1,566,888 + Echvi_1361 0.26 -1.5 1,566,889 - Echvi_1361 0.26 +0.0 1,566,889 - Echvi_1361 0.26 -0.9 1,566,889 - Echvi_1361 0.26 -2.2 1,566,889 - Echvi_1361 0.26 -1.1 1,566,941 - Echvi_1361 0.34 -0.5 1,567,087 - Echvi_1361 0.55 -1.4 1,567,087 - Echvi_1361 0.55 -0.4 1,567,117 + Echvi_1361 0.60 +1.9 1,567,118 - Echvi_1361 0.60 -0.6 1,567,378 + -0.1 1,567,379 - -0.6 1,567,379 - +0.6 1,567,379 - +2.0 1,567,379 - -0.2 1,567,394 + -0.8 1,567,394 + +0.1 1,567,395 - -3.1 1,567,399 + -0.1 1,567,400 - -1.7 1,567,400 - +2.4 1,567,496 + +1.1 1,567,498 + -0.5 1,567,498 + -0.9 1,567,499 - -0.7 1,567,508 - -1.1 1,567,681 + Echvi_1362 0.11 +0.4 1,567,681 + Echvi_1362 0.11 -0.5 1,567,682 - Echvi_1362 0.12 +1.9 1,567,814 + Echvi_1362 0.17 -1.4 1,567,822 + Echvi_1362 0.17 +1.2 1,567,822 + Echvi_1362 0.17 +1.1 1,567,937 + Echvi_1362 0.22 +1.2 1,567,937 + Echvi_1362 0.22 -0.3 1,568,014 - Echvi_1362 0.25 -0.1 1,568,068 + Echvi_1362 0.27 +0.6 1,568,069 - Echvi_1362 0.27 +1.0 1,568,071 + Echvi_1362 0.27 +0.1 1,568,079 + Echvi_1362 0.28 -0.7 1,568,082 + Echvi_1362 0.28 -0.6 1,568,082 + Echvi_1362 0.28 -0.1 1,568,082 + Echvi_1362 0.28 +0.1 1,568,083 - Echvi_1362 0.28 -0.8 1,568,086 + Echvi_1362 0.28 -0.6 1,568,086 + Echvi_1362 0.28 +0.4 1,568,086 + Echvi_1362 0.28 +0.6 1,568,086 + Echvi_1362 0.28 -0.0 1,568,087 - Echvi_1362 0.28 +0.9 1,568,165 - Echvi_1362 0.31 -1.0 1,568,171 - Echvi_1362 0.31 -1.6 1,568,181 - Echvi_1362 0.32 -0.7 1,568,221 + Echvi_1362 0.33 -0.5 1,568,221 + Echvi_1362 0.33 -0.3 1,568,224 + Echvi_1362 0.34 +0.5 1,568,250 + Echvi_1362 0.35 -0.5 1,568,250 + Echvi_1362 0.35 +0.2 1,568,250 + Echvi_1362 0.35 +0.6 1,568,251 - Echvi_1362 0.35 -1.0 1,568,251 - Echvi_1362 0.35 +0.1 1,568,254 + Echvi_1362 0.35 -0.0
Or see this region's nucleotide sequence