Experiment: m.b. benzoic 0.4 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1282 and Echvi_1283 overlap by 14 nucleotides Echvi_1283 and Echvi_1284 are separated by 154 nucleotides Echvi_1284 and Echvi_1285 are separated by 61 nucleotides
Echvi_1282: Echvi_1282 - ABC-type sugar transport system, ATPase component, at 1,470,198 to 1,471,706
_1282
Echvi_1283: Echvi_1283 - Predicted periplasmic lipoprotein (DUF2291)., at 1,471,693 to 1,472,358
_1283
Echvi_1284: Echvi_1284 - ABC-type sugar transport system, periplasmic component, at 1,472,513 to 1,473,463
_1284
Echvi_1285: Echvi_1285 - Transketolase, C-terminal subunit, at 1,473,525 to 1,474,484
_1285
Position (kb)
1472
1473
1474 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1471.526 kb on + strand, within Echvi_1282 at 1471.527 kb on - strand, within Echvi_1282 at 1471.528 kb on + strand, within Echvi_1282 at 1471.528 kb on + strand, within Echvi_1282 at 1471.544 kb on + strand, within Echvi_1282 at 1471.545 kb on - strand, within Echvi_1282 at 1471.620 kb on + strand at 1471.672 kb on - strand at 1471.821 kb on + strand, within Echvi_1283 at 1471.821 kb on + strand, within Echvi_1283 at 1471.821 kb on + strand, within Echvi_1283 at 1471.973 kb on + strand, within Echvi_1283 at 1472.023 kb on + strand, within Echvi_1283 at 1472.173 kb on + strand, within Echvi_1283 at 1472.226 kb on - strand, within Echvi_1283 at 1472.315 kb on - strand at 1472.402 kb on + strand at 1472.514 kb on + strand at 1472.538 kb on + strand at 1472.538 kb on + strand at 1472.538 kb on + strand at 1472.539 kb on - strand at 1472.546 kb on + strand at 1472.614 kb on + strand, within Echvi_1284 at 1472.616 kb on + strand, within Echvi_1284 at 1472.616 kb on + strand, within Echvi_1284 at 1472.616 kb on + strand, within Echvi_1284 at 1472.616 kb on + strand, within Echvi_1284 at 1472.616 kb on + strand, within Echvi_1284 at 1473.030 kb on + strand, within Echvi_1284 at 1473.057 kb on + strand, within Echvi_1284 at 1473.057 kb on + strand, within Echvi_1284 at 1473.057 kb on + strand, within Echvi_1284 at 1473.062 kb on - strand, within Echvi_1284 at 1473.247 kb on + strand, within Echvi_1284 at 1473.247 kb on + strand, within Echvi_1284 at 1473.346 kb on + strand, within Echvi_1284 at 1473.346 kb on + strand, within Echvi_1284 at 1473.346 kb on + strand, within Echvi_1284 at 1473.347 kb on - strand, within Echvi_1284 at 1473.347 kb on - strand, within Echvi_1284 at 1473.350 kb on + strand, within Echvi_1284 at 1473.356 kb on + strand, within Echvi_1284 at 1473.453 kb on - strand at 1473.522 kb on + strand at 1473.526 kb on + strand at 1473.526 kb on + strand at 1473.527 kb on - strand at 1473.585 kb on + strand at 1473.609 kb on + strand at 1473.614 kb on + strand at 1473.614 kb on + strand at 1473.614 kb on + strand at 1473.614 kb on + strand at 1473.614 kb on + strand at 1473.614 kb on + strand at 1473.614 kb on + strand at 1473.614 kb on + strand at 1473.615 kb on - strand at 1473.703 kb on + strand, within Echvi_1285 at 1473.783 kb on + strand, within Echvi_1285 at 1473.783 kb on + strand, within Echvi_1285 at 1473.783 kb on + strand, within Echvi_1285 at 1473.883 kb on - strand, within Echvi_1285 at 1474.033 kb on + strand, within Echvi_1285 at 1474.033 kb on + strand, within Echvi_1285 at 1474.033 kb on + strand, within Echvi_1285 at 1474.311 kb on + strand, within Echvi_1285 at 1474.311 kb on + strand, within Echvi_1285 at 1474.328 kb on - strand, within Echvi_1285 at 1474.438 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml remove 1,471,526 + Echvi_1282 0.88 +0.5 1,471,527 - Echvi_1282 0.88 -0.5 1,471,528 + Echvi_1282 0.88 -0.1 1,471,528 + Echvi_1282 0.88 -0.8 1,471,544 + Echvi_1282 0.89 -0.2 1,471,545 - Echvi_1282 0.89 -0.7 1,471,620 + -1.0 1,471,672 - -0.3 1,471,821 + Echvi_1283 0.19 +0.9 1,471,821 + Echvi_1283 0.19 +1.2 1,471,821 + Echvi_1283 0.19 -0.6 1,471,973 + Echvi_1283 0.42 -0.8 1,472,023 + Echvi_1283 0.50 +1.7 1,472,173 + Echvi_1283 0.72 +1.9 1,472,226 - Echvi_1283 0.80 +0.9 1,472,315 - -2.5 1,472,402 + -0.3 1,472,514 + +0.3 1,472,538 + +0.4 1,472,538 + -0.5 1,472,538 + -0.2 1,472,539 - -1.5 1,472,546 + -0.7 1,472,614 + Echvi_1284 0.11 +0.5 1,472,616 + Echvi_1284 0.11 -1.3 1,472,616 + Echvi_1284 0.11 -1.7 1,472,616 + Echvi_1284 0.11 +1.7 1,472,616 + Echvi_1284 0.11 +0.3 1,472,616 + Echvi_1284 0.11 -0.2 1,473,030 + Echvi_1284 0.54 -0.1 1,473,057 + Echvi_1284 0.57 -0.7 1,473,057 + Echvi_1284 0.57 +1.2 1,473,057 + Echvi_1284 0.57 +0.8 1,473,062 - Echvi_1284 0.58 -1.6 1,473,247 + Echvi_1284 0.77 -1.4 1,473,247 + Echvi_1284 0.77 +0.3 1,473,346 + Echvi_1284 0.88 +0.1 1,473,346 + Echvi_1284 0.88 -1.5 1,473,346 + Echvi_1284 0.88 -1.1 1,473,347 - Echvi_1284 0.88 +1.3 1,473,347 - Echvi_1284 0.88 -0.5 1,473,350 + Echvi_1284 0.88 -0.3 1,473,356 + Echvi_1284 0.89 -1.3 1,473,453 - -0.2 1,473,522 + +0.5 1,473,526 + -0.5 1,473,526 + -0.7 1,473,527 - -1.3 1,473,585 + -0.5 1,473,609 + +0.2 1,473,614 + -1.5 1,473,614 + +1.0 1,473,614 + +0.1 1,473,614 + -0.7 1,473,614 + -0.1 1,473,614 + +0.8 1,473,614 + +0.6 1,473,614 + -0.2 1,473,615 - -1.4 1,473,703 + Echvi_1285 0.19 +1.1 1,473,783 + Echvi_1285 0.27 -0.4 1,473,783 + Echvi_1285 0.27 -0.5 1,473,783 + Echvi_1285 0.27 +0.0 1,473,883 - Echvi_1285 0.37 -0.0 1,474,033 + Echvi_1285 0.53 +1.4 1,474,033 + Echvi_1285 0.53 +0.8 1,474,033 + Echvi_1285 0.53 +0.9 1,474,311 + Echvi_1285 0.82 -0.0 1,474,311 + Echvi_1285 0.82 +1.2 1,474,328 - Echvi_1285 0.84 -0.1 1,474,438 - -0.4
Or see this region's nucleotide sequence