Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0870

Experiment: m.b. benzoic 0.4 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0868 and Echvi_0869 overlap by 59 nucleotidesEchvi_0869 and Echvi_0870 are separated by 103 nucleotidesEchvi_0870 and Echvi_0871 are separated by 168 nucleotides Echvi_0868: Echvi_0868 - Uncharacterized protein related to plant photosystem II stability/assembly factor, at 991,863 to 992,909 _0868 Echvi_0869: Echvi_0869 - hypothetical protein, at 992,851 to 993,000 _0869 Echvi_0870: Echvi_0870 - Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase, at 993,104 to 993,850 _0870 Echvi_0871: Echvi_0871 - 7-keto-8-aminopelargonate synthetase and related enzymes, at 994,019 to 995,077 _0871 Position (kb) 993 994Strain fitness (log2 ratio) -2 -1 0 1 2 3at 992.154 kb on - strand, within Echvi_0868at 992.154 kb on - strand, within Echvi_0868at 992.196 kb on + strand, within Echvi_0868at 992.197 kb on - strand, within Echvi_0868at 992.235 kb on + strand, within Echvi_0868at 992.235 kb on + strand, within Echvi_0868at 992.236 kb on - strand, within Echvi_0868at 992.236 kb on - strand, within Echvi_0868at 992.301 kb on + strand, within Echvi_0868at 992.322 kb on - strand, within Echvi_0868at 992.434 kb on + strand, within Echvi_0868at 992.484 kb on - strand, within Echvi_0868at 992.484 kb on - strand, within Echvi_0868at 992.484 kb on - strand, within Echvi_0868at 992.487 kb on + strand, within Echvi_0868at 992.487 kb on + strand, within Echvi_0868at 992.487 kb on + strand, within Echvi_0868at 992.488 kb on - strand, within Echvi_0868at 992.488 kb on - strand, within Echvi_0868at 992.488 kb on - strand, within Echvi_0868at 992.488 kb on - strand, within Echvi_0868at 992.488 kb on - strand, within Echvi_0868at 992.491 kb on - strand, within Echvi_0868at 992.523 kb on - strand, within Echvi_0868at 992.537 kb on + strand, within Echvi_0868at 992.633 kb on + strand, within Echvi_0868at 992.633 kb on + strand, within Echvi_0868at 992.634 kb on - strand, within Echvi_0868at 992.634 kb on - strand, within Echvi_0868at 992.634 kb on - strand, within Echvi_0868at 992.634 kb on - strand, within Echvi_0868at 992.727 kb on + strand, within Echvi_0868at 992.727 kb on + strand, within Echvi_0868at 992.905 kb on - strandat 992.905 kb on - strandat 992.908 kb on - strandat 992.939 kb on - strand, within Echvi_0869at 992.939 kb on - strand, within Echvi_0869at 992.978 kb on + strand, within Echvi_0869at 992.978 kb on + strand, within Echvi_0869at 992.981 kb on + strand, within Echvi_0869at 992.984 kb on + strand, within Echvi_0869at 993.004 kb on + strandat 993.004 kb on + strandat 993.005 kb on - strandat 993.009 kb on + strandat 993.046 kb on + strandat 993.058 kb on + strandat 993.058 kb on + strandat 993.058 kb on + strandat 993.059 kb on - strandat 993.059 kb on - strandat 993.060 kb on + strandat 993.060 kb on + strandat 993.060 kb on + strandat 993.060 kb on + strandat 993.061 kb on - strandat 993.061 kb on - strandat 993.061 kb on - strandat 993.067 kb on - strandat 993.081 kb on + strandat 993.124 kb on + strandat 993.124 kb on + strandat 993.124 kb on + strandat 993.125 kb on - strandat 993.125 kb on - strandat 993.125 kb on - strandat 993.125 kb on - strandat 993.125 kb on - strandat 993.127 kb on - strandat 993.133 kb on + strandat 993.133 kb on + strandat 993.172 kb on + strandat 993.298 kb on + strand, within Echvi_0870at 993.299 kb on - strand, within Echvi_0870at 993.299 kb on - strand, within Echvi_0870at 993.299 kb on - strand, within Echvi_0870at 993.304 kb on - strand, within Echvi_0870at 993.304 kb on - strand, within Echvi_0870at 993.304 kb on - strand, within Echvi_0870at 993.307 kb on + strand, within Echvi_0870at 993.321 kb on - strand, within Echvi_0870at 993.322 kb on + strand, within Echvi_0870at 993.323 kb on - strand, within Echvi_0870at 993.337 kb on - strand, within Echvi_0870at 993.484 kb on + strand, within Echvi_0870at 993.485 kb on - strand, within Echvi_0870at 993.527 kb on - strand, within Echvi_0870at 993.560 kb on + strand, within Echvi_0870at 993.560 kb on + strand, within Echvi_0870at 993.561 kb on - strand, within Echvi_0870at 993.561 kb on - strand, within Echvi_0870at 993.561 kb on - strand, within Echvi_0870at 993.594 kb on + strand, within Echvi_0870at 993.594 kb on + strand, within Echvi_0870at 993.595 kb on - strand, within Echvi_0870at 993.600 kb on - strand, within Echvi_0870at 993.604 kb on - strand, within Echvi_0870at 993.659 kb on + strand, within Echvi_0870at 993.659 kb on + strand, within Echvi_0870at 993.768 kb on + strand, within Echvi_0870at 993.782 kb on + strandat 993.785 kb on + strandat 993.785 kb on + strandat 993.845 kb on - strandat 993.845 kb on - strandat 993.896 kb on - strandat 993.928 kb on - strandat 993.945 kb on - strandat 993.974 kb on + strandat 993.982 kb on - strandat 993.999 kb on + strandat 994.007 kb on - strandat 994.009 kb on - strandat 994.020 kb on + strandat 994.020 kb on + strandat 994.020 kb on + strandat 994.021 kb on - strandat 994.071 kb on + strandat 994.072 kb on - strandat 994.148 kb on - strand, within Echvi_0871at 994.261 kb on + strand, within Echvi_0871at 994.261 kb on + strand, within Echvi_0871at 994.274 kb on + strand, within Echvi_0871at 994.275 kb on - strand, within Echvi_0871at 994.294 kb on - strand, within Echvi_0871at 994.400 kb on + strand, within Echvi_0871at 994.400 kb on + strand, within Echvi_0871at 994.400 kb on + strand, within Echvi_0871at 994.485 kb on + strand, within Echvi_0871at 994.494 kb on + strand, within Echvi_0871at 994.494 kb on + strand, within Echvi_0871at 994.495 kb on - strand, within Echvi_0871at 994.537 kb on + strand, within Echvi_0871at 994.545 kb on + strand, within Echvi_0871at 994.545 kb on + strand, within Echvi_0871at 994.546 kb on - strand, within Echvi_0871at 994.548 kb on + strand, within Echvi_0871at 994.575 kb on - strand, within Echvi_0871at 994.606 kb on + strand, within Echvi_0871at 994.606 kb on + strand, within Echvi_0871at 994.761 kb on - strand, within Echvi_0871at 994.779 kb on + strand, within Echvi_0871at 994.779 kb on + strand, within Echvi_0871

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
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992,154 - Echvi_0868 0.28 -0.0
992,154 - Echvi_0868 0.28 +0.2
992,196 + Echvi_0868 0.32 +0.3
992,197 - Echvi_0868 0.32 -0.7
992,235 + Echvi_0868 0.36 +0.6
992,235 + Echvi_0868 0.36 -0.6
992,236 - Echvi_0868 0.36 +0.4
992,236 - Echvi_0868 0.36 -0.1
992,301 + Echvi_0868 0.42 -0.6
992,322 - Echvi_0868 0.44 +0.4
992,434 + Echvi_0868 0.55 -1.1
992,484 - Echvi_0868 0.59 +0.5
992,484 - Echvi_0868 0.59 -0.5
992,484 - Echvi_0868 0.59 +0.3
992,487 + Echvi_0868 0.60 +1.3
992,487 + Echvi_0868 0.60 +0.4
992,487 + Echvi_0868 0.60 +0.6
992,488 - Echvi_0868 0.60 +0.0
992,488 - Echvi_0868 0.60 +0.3
992,488 - Echvi_0868 0.60 +1.2
992,488 - Echvi_0868 0.60 +1.7
992,488 - Echvi_0868 0.60 -0.2
992,491 - Echvi_0868 0.60 +0.2
992,523 - Echvi_0868 0.63 -0.2
992,537 + Echvi_0868 0.64 -0.4
992,633 + Echvi_0868 0.74 -1.6
992,633 + Echvi_0868 0.74 +0.7
992,634 - Echvi_0868 0.74 +0.5
992,634 - Echvi_0868 0.74 -1.3
992,634 - Echvi_0868 0.74 -1.0
992,634 - Echvi_0868 0.74 +0.0
992,727 + Echvi_0868 0.83 -2.3
992,727 + Echvi_0868 0.83 -0.6
992,905 - -0.8
992,905 - -0.2
992,908 - +0.3
992,939 - Echvi_0869 0.59 +0.0
992,939 - Echvi_0869 0.59 +0.6
992,978 + Echvi_0869 0.85 -0.3
992,978 + Echvi_0869 0.85 +0.2
992,981 + Echvi_0869 0.87 -0.0
992,984 + Echvi_0869 0.89 -0.1
993,004 + +0.9
993,004 + +0.1
993,005 - -0.9
993,009 + -0.7
993,046 + +0.6
993,058 + -1.5
993,058 + +0.2
993,058 + -0.6
993,059 - -0.2
993,059 - +0.5
993,060 + -2.4
993,060 + +0.5
993,060 + -0.4
993,060 + -0.8
993,061 - +0.3
993,061 - +0.6
993,061 - -2.0
993,067 - -0.4
993,081 + -0.1
993,124 + +3.5
993,124 + +0.0
993,124 + -1.0
993,125 - +0.7
993,125 - -1.0
993,125 - -0.9
993,125 - +0.4
993,125 - +0.5
993,127 - +0.5
993,133 + -0.5
993,133 + -0.3
993,172 + +0.0
993,298 + Echvi_0870 0.26 +0.7
993,299 - Echvi_0870 0.26 -0.2
993,299 - Echvi_0870 0.26 -1.0
993,299 - Echvi_0870 0.26 +0.9
993,304 - Echvi_0870 0.27 -2.4
993,304 - Echvi_0870 0.27 +0.8
993,304 - Echvi_0870 0.27 +1.0
993,307 + Echvi_0870 0.27 -0.0
993,321 - Echvi_0870 0.29 -0.2
993,322 + Echvi_0870 0.29 -0.1
993,323 - Echvi_0870 0.29 +0.2
993,337 - Echvi_0870 0.31 +1.0
993,484 + Echvi_0870 0.51 -0.4
993,485 - Echvi_0870 0.51 +1.3
993,527 - Echvi_0870 0.57 -0.1
993,560 + Echvi_0870 0.61 +1.5
993,560 + Echvi_0870 0.61 +0.9
993,561 - Echvi_0870 0.61 -0.1
993,561 - Echvi_0870 0.61 +2.0
993,561 - Echvi_0870 0.61 -0.5
993,594 + Echvi_0870 0.66 +0.3
993,594 + Echvi_0870 0.66 -1.5
993,595 - Echvi_0870 0.66 -0.5
993,600 - Echvi_0870 0.66 -0.2
993,604 - Echvi_0870 0.67 +0.6
993,659 + Echvi_0870 0.74 +0.6
993,659 + Echvi_0870 0.74 +0.7
993,768 + Echvi_0870 0.89 +1.1
993,782 + -0.1
993,785 + +1.5
993,785 + -0.0
993,845 - -0.9
993,845 - -0.8
993,896 - -0.5
993,928 - +0.9
993,945 - -0.1
993,974 + -0.8
993,982 - -1.3
993,999 + +0.3
994,007 - -0.9
994,009 - +0.0
994,020 + +1.0
994,020 + -1.7
994,020 + -0.0
994,021 - +0.1
994,071 + +0.8
994,072 - -0.4
994,148 - Echvi_0871 0.12 +0.0
994,261 + Echvi_0871 0.23 -0.4
994,261 + Echvi_0871 0.23 +0.4
994,274 + Echvi_0871 0.24 -0.4
994,275 - Echvi_0871 0.24 -0.1
994,294 - Echvi_0871 0.26 +0.1
994,400 + Echvi_0871 0.36 +1.0
994,400 + Echvi_0871 0.36 +1.9
994,400 + Echvi_0871 0.36 +0.3
994,485 + Echvi_0871 0.44 +0.9
994,494 + Echvi_0871 0.45 +0.2
994,494 + Echvi_0871 0.45 -0.1
994,495 - Echvi_0871 0.45 +0.9
994,537 + Echvi_0871 0.49 -0.1
994,545 + Echvi_0871 0.50 -0.2
994,545 + Echvi_0871 0.50 +0.4
994,546 - Echvi_0871 0.50 -0.1
994,548 + Echvi_0871 0.50 +0.7
994,575 - Echvi_0871 0.53 +0.4
994,606 + Echvi_0871 0.55 +0.6
994,606 + Echvi_0871 0.55 -1.5
994,761 - Echvi_0871 0.70 -0.7
994,779 + Echvi_0871 0.72 -0.5
994,779 + Echvi_0871 0.72 -2.4

Or see this region's nucleotide sequence