Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0300

Experiment: m.b. benzoic 0.4 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0298 and Echvi_0299 overlap by 4 nucleotidesEchvi_0299 and Echvi_0300 overlap by 4 nucleotidesEchvi_0300 and Echvi_0301 are separated by 1 nucleotidesEchvi_0301 and Echvi_0302 are separated by 86 nucleotides Echvi_0298: Echvi_0298 - gliding-associated putative ABC transporter substrate-binding component GldG, at 308,653 to 310,368 _0298 Echvi_0299: Echvi_0299 - gliding motility-associated ABC transporter permease protein GldF, at 310,365 to 311,087 _0299 Echvi_0300: Echvi_0300 - gliding motility-associated ABC transporter ATP-binding subunit GldA, at 311,084 to 312,001 _0300 Echvi_0301: Echvi_0301 - Short-chain dehydrogenases of various substrate specificities, at 312,003 to 312,776 _0301 Echvi_0302: Echvi_0302 - amidohydrolase, at 312,863 to 314,161 _0302 Position (kb) 311 312 313Strain fitness (log2 ratio) -2 -1 0 1 2at 310.207 kb on - strandat 310.207 kb on - strandat 310.222 kb on - strandat 310.222 kb on - strandat 310.383 kb on + strandat 310.420 kb on - strandat 310.462 kb on - strand, within Echvi_0299at 310.472 kb on - strand, within Echvi_0299at 310.514 kb on + strand, within Echvi_0299at 310.514 kb on + strand, within Echvi_0299at 310.515 kb on - strand, within Echvi_0299at 310.527 kb on + strand, within Echvi_0299at 310.527 kb on + strand, within Echvi_0299at 310.527 kb on + strand, within Echvi_0299at 310.528 kb on - strand, within Echvi_0299at 310.599 kb on - strand, within Echvi_0299at 310.654 kb on - strand, within Echvi_0299at 310.654 kb on - strand, within Echvi_0299at 310.695 kb on - strand, within Echvi_0299at 310.700 kb on + strand, within Echvi_0299at 310.700 kb on + strand, within Echvi_0299at 310.738 kb on + strand, within Echvi_0299at 310.739 kb on - strand, within Echvi_0299at 310.739 kb on - strand, within Echvi_0299at 310.739 kb on - strand, within Echvi_0299at 310.739 kb on - strand, within Echvi_0299at 310.744 kb on - strand, within Echvi_0299at 310.792 kb on + strand, within Echvi_0299at 310.792 kb on + strand, within Echvi_0299at 310.803 kb on + strand, within Echvi_0299at 310.803 kb on + strand, within Echvi_0299at 310.803 kb on + strand, within Echvi_0299at 310.803 kb on + strand, within Echvi_0299at 310.804 kb on - strand, within Echvi_0299at 310.821 kb on + strand, within Echvi_0299at 310.901 kb on + strand, within Echvi_0299at 310.901 kb on + strand, within Echvi_0299at 310.911 kb on + strand, within Echvi_0299at 310.911 kb on + strand, within Echvi_0299at 310.911 kb on + strand, within Echvi_0299at 310.911 kb on + strand, within Echvi_0299at 310.911 kb on + strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.912 kb on - strand, within Echvi_0299at 310.915 kb on + strand, within Echvi_0299at 310.915 kb on + strand, within Echvi_0299at 310.916 kb on - strand, within Echvi_0299at 310.916 kb on - strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.922 kb on + strand, within Echvi_0299at 310.924 kb on + strand, within Echvi_0299at 310.958 kb on - strand, within Echvi_0299at 311.033 kb on - strandat 311.071 kb on + strandat 311.076 kb on + strandat 311.077 kb on - strandat 311.077 kb on - strandat 311.102 kb on + strandat 311.103 kb on - strandat 311.114 kb on + strandat 311.233 kb on - strand, within Echvi_0300at 311.233 kb on - strand, within Echvi_0300at 311.246 kb on + strand, within Echvi_0300at 311.246 kb on + strand, within Echvi_0300at 311.247 kb on - strand, within Echvi_0300at 311.247 kb on - strand, within Echvi_0300at 311.316 kb on + strand, within Echvi_0300at 311.317 kb on - strand, within Echvi_0300at 311.345 kb on + strand, within Echvi_0300at 311.345 kb on + strand, within Echvi_0300at 311.346 kb on - strand, within Echvi_0300at 311.437 kb on + strand, within Echvi_0300at 311.522 kb on - strand, within Echvi_0300at 311.536 kb on + strand, within Echvi_0300at 311.649 kb on - strand, within Echvi_0300at 311.651 kb on + strand, within Echvi_0300at 311.651 kb on + strand, within Echvi_0300at 311.694 kb on + strand, within Echvi_0300at 311.742 kb on + strand, within Echvi_0300at 311.752 kb on + strand, within Echvi_0300at 311.819 kb on + strand, within Echvi_0300at 311.819 kb on + strand, within Echvi_0300at 311.819 kb on + strand, within Echvi_0300at 311.881 kb on + strand, within Echvi_0300at 311.882 kb on - strand, within Echvi_0300at 311.882 kb on - strand, within Echvi_0300at 311.932 kb on + strandat 311.967 kb on + strandat 311.970 kb on + strandat 311.971 kb on - strandat 311.971 kb on - strandat 311.971 kb on - strandat 311.971 kb on - strandat 311.978 kb on + strandat 311.987 kb on + strandat 311.987 kb on + strandat 312.048 kb on + strandat 312.055 kb on + strandat 312.116 kb on + strand, within Echvi_0301at 312.117 kb on - strand, within Echvi_0301at 312.117 kb on - strand, within Echvi_0301at 312.194 kb on + strand, within Echvi_0301at 312.220 kb on + strand, within Echvi_0301at 312.221 kb on - strand, within Echvi_0301at 312.221 kb on - strand, within Echvi_0301at 312.243 kb on + strand, within Echvi_0301at 312.243 kb on + strand, within Echvi_0301at 312.244 kb on - strand, within Echvi_0301at 312.511 kb on + strand, within Echvi_0301at 312.511 kb on + strand, within Echvi_0301at 312.620 kb on + strand, within Echvi_0301at 312.651 kb on + strand, within Echvi_0301at 312.663 kb on + strand, within Echvi_0301at 312.664 kb on - strand, within Echvi_0301at 312.664 kb on - strand, within Echvi_0301at 312.675 kb on + strand, within Echvi_0301at 312.675 kb on + strand, within Echvi_0301at 312.675 kb on + strand, within Echvi_0301at 312.676 kb on - strand, within Echvi_0301at 312.676 kb on - strand, within Echvi_0301at 312.676 kb on - strand, within Echvi_0301at 312.676 kb on - strand, within Echvi_0301at 312.696 kb on + strand, within Echvi_0301at 312.696 kb on + strand, within Echvi_0301at 312.696 kb on + strand, within Echvi_0301at 312.697 kb on - strand, within Echvi_0301at 312.709 kb on - strandat 312.722 kb on + strandat 312.723 kb on - strandat 312.762 kb on + strandat 312.764 kb on + strandat 312.765 kb on - strandat 312.780 kb on - strandat 312.879 kb on + strandat 312.879 kb on + strandat 312.879 kb on + strandat 312.880 kb on - strandat 312.880 kb on - strandat 312.892 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.4 mg/ml
remove
310,207 - +0.6
310,207 - -0.1
310,222 - +0.1
310,222 - -0.3
310,383 + +0.1
310,420 - -0.3
310,462 - Echvi_0299 0.13 +0.9
310,472 - Echvi_0299 0.15 -0.1
310,514 + Echvi_0299 0.21 +0.0
310,514 + Echvi_0299 0.21 +0.5
310,515 - Echvi_0299 0.21 +1.0
310,527 + Echvi_0299 0.22 +0.2
310,527 + Echvi_0299 0.22 +0.7
310,527 + Echvi_0299 0.22 +0.9
310,528 - Echvi_0299 0.23 -0.3
310,599 - Echvi_0299 0.32 +0.5
310,654 - Echvi_0299 0.40 +0.0
310,654 - Echvi_0299 0.40 +1.7
310,695 - Echvi_0299 0.46 +0.4
310,700 + Echvi_0299 0.46 +0.6
310,700 + Echvi_0299 0.46 +0.5
310,738 + Echvi_0299 0.52 +1.7
310,739 - Echvi_0299 0.52 +0.9
310,739 - Echvi_0299 0.52 +0.2
310,739 - Echvi_0299 0.52 -0.2
310,739 - Echvi_0299 0.52 -0.1
310,744 - Echvi_0299 0.52 +0.1
310,792 + Echvi_0299 0.59 +0.7
310,792 + Echvi_0299 0.59 +0.2
310,803 + Echvi_0299 0.61 +0.7
310,803 + Echvi_0299 0.61 +0.4
310,803 + Echvi_0299 0.61 +0.0
310,803 + Echvi_0299 0.61 +0.3
310,804 - Echvi_0299 0.61 -0.2
310,821 + Echvi_0299 0.63 +1.2
310,901 + Echvi_0299 0.74 -1.3
310,901 + Echvi_0299 0.74 -2.2
310,911 + Echvi_0299 0.76 +1.0
310,911 + Echvi_0299 0.76 +0.7
310,911 + Echvi_0299 0.76 +0.1
310,911 + Echvi_0299 0.76 -0.1
310,911 + Echvi_0299 0.76 +0.6
310,912 - Echvi_0299 0.76 -0.2
310,912 - Echvi_0299 0.76 +1.2
310,912 - Echvi_0299 0.76 +0.4
310,912 - Echvi_0299 0.76 +0.2
310,912 - Echvi_0299 0.76 -0.3
310,912 - Echvi_0299 0.76 +0.7
310,912 - Echvi_0299 0.76 +0.0
310,912 - Echvi_0299 0.76 -0.2
310,912 - Echvi_0299 0.76 -0.3
310,915 + Echvi_0299 0.76 +0.2
310,915 + Echvi_0299 0.76 +0.0
310,916 - Echvi_0299 0.76 -0.1
310,916 - Echvi_0299 0.76 +1.0
310,922 + Echvi_0299 0.77 +0.2
310,922 + Echvi_0299 0.77 +0.3
310,922 + Echvi_0299 0.77 +0.2
310,922 + Echvi_0299 0.77 +0.6
310,922 + Echvi_0299 0.77 +1.1
310,922 + Echvi_0299 0.77 +0.2
310,924 + Echvi_0299 0.77 +0.7
310,958 - Echvi_0299 0.82 +0.1
311,033 - +1.4
311,071 + +0.0
311,076 + +0.4
311,077 - -0.6
311,077 - +1.1
311,102 + +0.4
311,103 - -0.2
311,114 + -0.4
311,233 - Echvi_0300 0.16 +0.6
311,233 - Echvi_0300 0.16 -0.7
311,246 + Echvi_0300 0.18 +0.6
311,246 + Echvi_0300 0.18 +0.3
311,247 - Echvi_0300 0.18 +0.4
311,247 - Echvi_0300 0.18 +0.1
311,316 + Echvi_0300 0.25 +0.3
311,317 - Echvi_0300 0.25 -0.2
311,345 + Echvi_0300 0.28 +0.3
311,345 + Echvi_0300 0.28 +0.4
311,346 - Echvi_0300 0.29 +0.4
311,437 + Echvi_0300 0.38 +0.5
311,522 - Echvi_0300 0.48 -1.0
311,536 + Echvi_0300 0.49 +0.3
311,649 - Echvi_0300 0.62 -0.2
311,651 + Echvi_0300 0.62 +0.8
311,651 + Echvi_0300 0.62 +0.1
311,694 + Echvi_0300 0.66 +0.7
311,742 + Echvi_0300 0.72 +0.3
311,752 + Echvi_0300 0.73 +0.0
311,819 + Echvi_0300 0.80 +0.4
311,819 + Echvi_0300 0.80 +1.6
311,819 + Echvi_0300 0.80 +2.0
311,881 + Echvi_0300 0.87 +1.4
311,882 - Echvi_0300 0.87 +0.7
311,882 - Echvi_0300 0.87 +0.1
311,932 + +0.8
311,967 + +0.6
311,970 + +0.1
311,971 - +0.8
311,971 - +1.0
311,971 - -0.7
311,971 - +0.8
311,978 + +0.8
311,987 + +0.5
311,987 + -0.4
312,048 + +0.3
312,055 + +0.1
312,116 + Echvi_0301 0.15 +0.1
312,117 - Echvi_0301 0.15 +0.2
312,117 - Echvi_0301 0.15 +0.4
312,194 + Echvi_0301 0.25 +0.5
312,220 + Echvi_0301 0.28 +0.4
312,221 - Echvi_0301 0.28 -1.4
312,221 - Echvi_0301 0.28 -0.0
312,243 + Echvi_0301 0.31 +0.6
312,243 + Echvi_0301 0.31 +0.1
312,244 - Echvi_0301 0.31 +0.6
312,511 + Echvi_0301 0.66 +1.2
312,511 + Echvi_0301 0.66 +0.5
312,620 + Echvi_0301 0.80 +0.3
312,651 + Echvi_0301 0.84 +0.6
312,663 + Echvi_0301 0.85 +0.1
312,664 - Echvi_0301 0.85 -1.3
312,664 - Echvi_0301 0.85 -1.1
312,675 + Echvi_0301 0.87 +0.7
312,675 + Echvi_0301 0.87 +1.2
312,675 + Echvi_0301 0.87 +0.3
312,676 - Echvi_0301 0.87 -0.5
312,676 - Echvi_0301 0.87 -1.0
312,676 - Echvi_0301 0.87 -0.2
312,676 - Echvi_0301 0.87 +0.1
312,696 + Echvi_0301 0.90 +0.3
312,696 + Echvi_0301 0.90 -1.8
312,696 + Echvi_0301 0.90 -0.4
312,697 - Echvi_0301 0.90 -0.9
312,709 - +0.6
312,722 + -0.3
312,723 - -0.4
312,762 + +1.5
312,764 + -0.5
312,765 - -1.2
312,780 - -0.5
312,879 + -0.3
312,879 + +0.2
312,879 + -0.0
312,880 - +0.1
312,880 - +0.1
312,892 + -0.7

Or see this region's nucleotide sequence