Strain Fitness in Agrobacterium fabrum C58 around Atu4782

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu4781 and Atu4782 overlap by 4 nucleotidesAtu4782 and Atu4783 are separated by 217 nucleotides Atu4781: Atu4781 - two component sensor kinase, at 1,950,972 to 1,953,104 Atu4781 Atu4782: Atu4782 - two component response regulator, at 1,953,101 to 1,953,847 Atu4782 Atu4783: Atu4783 - ABC transporter substrate-binding protein, at 1,954,065 to 1,955,093 Atu4783 Position (kb) 1953 1954Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1952.145 kb on + strand, within Atu4781at 1952.197 kb on + strand, within Atu4781at 1952.219 kb on + strand, within Atu4781at 1952.301 kb on - strand, within Atu4781at 1952.315 kb on + strand, within Atu4781at 1952.315 kb on + strand, within Atu4781at 1952.315 kb on + strand, within Atu4781at 1952.452 kb on + strand, within Atu4781at 1952.462 kb on + strand, within Atu4781at 1952.470 kb on - strand, within Atu4781at 1952.562 kb on - strand, within Atu4781at 1952.596 kb on + strand, within Atu4781at 1952.734 kb on + strand, within Atu4781at 1952.734 kb on + strand, within Atu4781at 1952.742 kb on - strand, within Atu4781at 1952.742 kb on - strand, within Atu4781at 1952.796 kb on - strand, within Atu4781at 1952.852 kb on - strand, within Atu4781at 1952.937 kb on - strandat 1952.945 kb on + strandat 1953.054 kb on + strandat 1953.143 kb on - strandat 1953.205 kb on + strand, within Atu4782at 1953.279 kb on - strand, within Atu4782at 1953.464 kb on + strand, within Atu4782at 1953.464 kb on - strand, within Atu4782at 1953.489 kb on + strand, within Atu4782at 1953.495 kb on - strand, within Atu4782at 1953.651 kb on - strand, within Atu4782at 1953.740 kb on + strand, within Atu4782at 1953.751 kb on + strand, within Atu4782at 1953.799 kb on + strandat 1953.864 kb on - strandat 1953.952 kb on - strandat 1953.983 kb on + strandat 1954.072 kb on - strandat 1954.096 kb on + strandat 1954.104 kb on - strandat 1954.104 kb on - strandat 1954.104 kb on - strandat 1954.175 kb on - strand, within Atu4783at 1954.529 kb on - strand, within Atu4783at 1954.531 kb on + strand, within Atu4783at 1954.563 kb on + strand, within Atu4783at 1954.606 kb on - strand, within Atu4783at 1954.717 kb on + strand, within Atu4783at 1954.725 kb on + strand, within Atu4783at 1954.763 kb on + strand, within Atu4783at 1954.773 kb on + strand, within Atu4783at 1954.779 kb on + strand, within Atu4783

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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1,952,145 + Atu4781 0.55 -3.9
1,952,197 + Atu4781 0.57 -2.7
1,952,219 + Atu4781 0.58 -3.3
1,952,301 - Atu4781 0.62 -3.9
1,952,315 + Atu4781 0.63 -3.4
1,952,315 + Atu4781 0.63 -6.4
1,952,315 + Atu4781 0.63 -5.2
1,952,452 + Atu4781 0.69 -5.1
1,952,462 + Atu4781 0.70 +0.5
1,952,470 - Atu4781 0.70 -3.1
1,952,562 - Atu4781 0.75 -6.1
1,952,596 + Atu4781 0.76 -2.0
1,952,734 + Atu4781 0.83 -3.3
1,952,734 + Atu4781 0.83 -2.7
1,952,742 - Atu4781 0.83 -2.4
1,952,742 - Atu4781 0.83 -3.7
1,952,796 - Atu4781 0.86 -5.0
1,952,852 - Atu4781 0.88 -1.5
1,952,937 - -5.6
1,952,945 + -6.5
1,953,054 + -3.6
1,953,143 - -2.5
1,953,205 + Atu4782 0.14 -4.4
1,953,279 - Atu4782 0.24 -4.2
1,953,464 + Atu4782 0.49 -4.6
1,953,464 - Atu4782 0.49 -3.3
1,953,489 + Atu4782 0.52 -4.9
1,953,495 - Atu4782 0.53 -2.2
1,953,651 - Atu4782 0.74 -4.6
1,953,740 + Atu4782 0.86 -5.1
1,953,751 + Atu4782 0.87 -4.1
1,953,799 + -2.7
1,953,864 - +0.2
1,953,952 - -4.3
1,953,983 + -3.3
1,954,072 - -4.2
1,954,096 + -3.7
1,954,104 - -3.2
1,954,104 - -5.7
1,954,104 - -2.4
1,954,175 - Atu4783 0.11 -5.8
1,954,529 - Atu4783 0.45 -2.5
1,954,531 + Atu4783 0.45 -3.9
1,954,563 + Atu4783 0.48 -3.1
1,954,606 - Atu4783 0.53 -4.1
1,954,717 + Atu4783 0.63 -3.7
1,954,725 + Atu4783 0.64 -3.0
1,954,763 + Atu4783 0.68 -6.4
1,954,773 + Atu4783 0.69 -3.1
1,954,779 + Atu4783 0.69 -4.2

Or see this region's nucleotide sequence