Strain Fitness in Agrobacterium fabrum C58 around Atu0409

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0408 and Atu0409 are separated by 179 nucleotidesAtu0409 and Atu0410 are separated by 127 nucleotides Atu0408: Atu0408 - ABC transporter, membrane spanning protein, at 404,550 to 406,226 Atu0408 Atu0409: Atu0409 - ferrichrome iron receptor, at 406,406 to 408,595 Atu0409 Atu0410: Atu0410 - transcriptional regulator, AraC family, at 408,723 to 409,586 Atu0410 Position (kb) 406 407 408 409Strain fitness (log2 ratio) -2 -1 0 1at 405.441 kb on + strand, within Atu0408at 405.442 kb on + strand, within Atu0408at 405.460 kb on + strand, within Atu0408at 405.478 kb on + strand, within Atu0408at 405.491 kb on - strand, within Atu0408at 405.547 kb on - strand, within Atu0408at 405.597 kb on - strand, within Atu0408at 405.597 kb on - strand, within Atu0408at 405.606 kb on - strand, within Atu0408at 405.634 kb on + strand, within Atu0408at 405.644 kb on + strand, within Atu0408at 405.693 kb on - strand, within Atu0408at 405.793 kb on - strand, within Atu0408at 405.793 kb on - strand, within Atu0408at 405.843 kb on + strand, within Atu0408at 405.843 kb on + strand, within Atu0408at 405.851 kb on - strand, within Atu0408at 405.856 kb on - strand, within Atu0408at 405.946 kb on + strand, within Atu0408at 405.954 kb on - strand, within Atu0408at 405.963 kb on + strand, within Atu0408at 406.003 kb on - strand, within Atu0408at 406.015 kb on + strand, within Atu0408at 406.023 kb on + strand, within Atu0408at 406.065 kb on + strandat 406.137 kb on - strandat 406.263 kb on - strandat 406.263 kb on - strandat 406.376 kb on + strandat 406.447 kb on + strandat 406.463 kb on + strandat 406.471 kb on - strandat 406.495 kb on + strandat 406.506 kb on + strandat 406.514 kb on - strandat 406.566 kb on - strandat 406.721 kb on + strand, within Atu0409at 406.729 kb on - strand, within Atu0409at 406.741 kb on + strand, within Atu0409at 406.749 kb on - strand, within Atu0409at 406.781 kb on + strand, within Atu0409at 406.781 kb on + strand, within Atu0409at 406.798 kb on - strand, within Atu0409at 406.864 kb on - strand, within Atu0409at 406.874 kb on - strand, within Atu0409at 406.890 kb on + strand, within Atu0409at 406.905 kb on - strand, within Atu0409at 406.916 kb on - strand, within Atu0409at 406.962 kb on - strand, within Atu0409at 407.040 kb on - strand, within Atu0409at 407.082 kb on - strand, within Atu0409at 407.082 kb on - strand, within Atu0409at 407.093 kb on - strand, within Atu0409at 407.140 kb on - strand, within Atu0409at 407.164 kb on - strand, within Atu0409at 407.169 kb on - strand, within Atu0409at 407.206 kb on - strand, within Atu0409at 407.230 kb on - strand, within Atu0409at 407.379 kb on - strand, within Atu0409at 407.407 kb on + strand, within Atu0409at 407.415 kb on - strand, within Atu0409at 407.424 kb on + strand, within Atu0409at 407.492 kb on + strand, within Atu0409at 407.495 kb on - strand, within Atu0409at 407.500 kb on - strand, within Atu0409at 407.643 kb on - strand, within Atu0409at 407.643 kb on - strand, within Atu0409at 407.660 kb on - strand, within Atu0409at 407.828 kb on + strand, within Atu0409at 407.873 kb on - strand, within Atu0409at 407.897 kb on + strand, within Atu0409at 407.902 kb on + strand, within Atu0409at 407.928 kb on + strand, within Atu0409at 407.987 kb on + strand, within Atu0409at 408.068 kb on - strand, within Atu0409at 408.085 kb on + strand, within Atu0409at 408.146 kb on + strand, within Atu0409at 408.231 kb on - strand, within Atu0409at 408.233 kb on + strand, within Atu0409at 408.315 kb on + strand, within Atu0409at 408.328 kb on - strand, within Atu0409at 408.328 kb on - strand, within Atu0409at 408.350 kb on + strand, within Atu0409at 408.358 kb on - strand, within Atu0409at 408.383 kb on + strandat 408.396 kb on - strandat 408.458 kb on + strandat 408.474 kb on - strandat 408.484 kb on - strandat 408.525 kb on + strandat 408.578 kb on - strandat 408.578 kb on - strandat 408.709 kb on - strandat 408.709 kb on - strandat 408.777 kb on - strandat 408.874 kb on + strand, within Atu0410at 408.896 kb on - strand, within Atu0410at 408.928 kb on + strand, within Atu0410at 408.993 kb on - strand, within Atu0410at 409.062 kb on + strand, within Atu0410at 409.062 kb on + strand, within Atu0410at 409.062 kb on + strand, within Atu0410at 409.106 kb on - strand, within Atu0410at 409.147 kb on - strand, within Atu0410at 409.196 kb on - strand, within Atu0410at 409.223 kb on + strand, within Atu0410at 409.230 kb on - strand, within Atu0410at 409.397 kb on - strand, within Atu0410at 409.476 kb on - strand, within Atu0410at 409.549 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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405,441 + Atu0408 0.53 +0.6
405,442 + Atu0408 0.53 -0.5
405,460 + Atu0408 0.54 +0.2
405,478 + Atu0408 0.55 -0.2
405,491 - Atu0408 0.56 +0.2
405,547 - Atu0408 0.59 +0.1
405,597 - Atu0408 0.62 +0.3
405,597 - Atu0408 0.62 -0.4
405,606 - Atu0408 0.63 -0.9
405,634 + Atu0408 0.65 +0.1
405,644 + Atu0408 0.65 -0.2
405,693 - Atu0408 0.68 +0.8
405,793 - Atu0408 0.74 +0.4
405,793 - Atu0408 0.74 +1.1
405,843 + Atu0408 0.77 +0.5
405,843 + Atu0408 0.77 +0.7
405,851 - Atu0408 0.78 -0.2
405,856 - Atu0408 0.78 +0.2
405,946 + Atu0408 0.83 +0.0
405,954 - Atu0408 0.84 -0.4
405,963 + Atu0408 0.84 -0.4
406,003 - Atu0408 0.87 +0.2
406,015 + Atu0408 0.87 -0.0
406,023 + Atu0408 0.88 +0.1
406,065 + +0.6
406,137 - -0.1
406,263 - -0.7
406,263 - +0.1
406,376 + +0.1
406,447 + +0.3
406,463 + -0.2
406,471 - -0.3
406,495 + +0.4
406,506 + -0.4
406,514 - -0.6
406,566 - +0.8
406,721 + Atu0409 0.14 -1.5
406,729 - Atu0409 0.15 +1.0
406,741 + Atu0409 0.15 -0.1
406,749 - Atu0409 0.16 +0.0
406,781 + Atu0409 0.17 +0.4
406,781 + Atu0409 0.17 +0.3
406,798 - Atu0409 0.18 +0.3
406,864 - Atu0409 0.21 +0.3
406,874 - Atu0409 0.21 +0.5
406,890 + Atu0409 0.22 +1.0
406,905 - Atu0409 0.23 -0.7
406,916 - Atu0409 0.23 -0.1
406,962 - Atu0409 0.25 -0.4
407,040 - Atu0409 0.29 -0.4
407,082 - Atu0409 0.31 -0.4
407,082 - Atu0409 0.31 +0.8
407,093 - Atu0409 0.31 -1.2
407,140 - Atu0409 0.34 -0.1
407,164 - Atu0409 0.35 -0.6
407,169 - Atu0409 0.35 +0.2
407,206 - Atu0409 0.37 -1.3
407,230 - Atu0409 0.38 +0.3
407,379 - Atu0409 0.44 +0.3
407,407 + Atu0409 0.46 +0.3
407,415 - Atu0409 0.46 +0.1
407,424 + Atu0409 0.46 -0.9
407,492 + Atu0409 0.50 -0.1
407,495 - Atu0409 0.50 -0.1
407,500 - Atu0409 0.50 +0.2
407,643 - Atu0409 0.56 +0.2
407,643 - Atu0409 0.56 +0.1
407,660 - Atu0409 0.57 -0.7
407,828 + Atu0409 0.65 +1.2
407,873 - Atu0409 0.67 +1.2
407,897 + Atu0409 0.68 -1.5
407,902 + Atu0409 0.68 +0.1
407,928 + Atu0409 0.69 -0.2
407,987 + Atu0409 0.72 -0.1
408,068 - Atu0409 0.76 -2.6
408,085 + Atu0409 0.77 -0.2
408,146 + Atu0409 0.79 -0.0
408,231 - Atu0409 0.83 +0.1
408,233 + Atu0409 0.83 +0.2
408,315 + Atu0409 0.87 +0.2
408,328 - Atu0409 0.88 +0.4
408,328 - Atu0409 0.88 -0.1
408,350 + Atu0409 0.89 -0.0
408,358 - Atu0409 0.89 -0.7
408,383 + +0.2
408,396 - +0.9
408,458 + +0.3
408,474 - -0.0
408,484 - +0.1
408,525 + +0.2
408,578 - +0.1
408,578 - -0.0
408,709 - +0.0
408,709 - +0.8
408,777 - -0.0
408,874 + Atu0410 0.17 -0.3
408,896 - Atu0410 0.20 -0.1
408,928 + Atu0410 0.24 +0.2
408,993 - Atu0410 0.31 -0.4
409,062 + Atu0410 0.39 -0.3
409,062 + Atu0410 0.39 -0.3
409,062 + Atu0410 0.39 -0.3
409,106 - Atu0410 0.44 -0.5
409,147 - Atu0410 0.49 +0.4
409,196 - Atu0410 0.55 -0.2
409,223 + Atu0410 0.58 -0.2
409,230 - Atu0410 0.59 +0.3
409,397 - Atu0410 0.78 -0.1
409,476 - Atu0410 0.87 -0.1
409,549 + +0.1

Or see this region's nucleotide sequence