Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21700 and AMB_RS24715 are separated by 56 nucleotides AMB_RS24715 and AMB_RS24720 are separated by 5 nucleotides AMB_RS24720 and AMB_RS21705 are separated by 12 nucleotides AMB_RS21705 and AMB_RS21710 are separated by 140 nucleotides
AMB_RS21700: AMB_RS21700 - hypothetical protein, at 4,697,640 to 4,697,933
_RS21700
AMB_RS24715: AMB_RS24715 - hypothetical protein, at 4,697,990 to 4,698,847
_RS24715
AMB_RS24720: AMB_RS24720 - GGDEF domain-containing protein, at 4,698,853 to 4,699,536
_RS24720
AMB_RS21705: AMB_RS21705 - site-specific integrase, at 4,699,549 to 4,700,115
_RS21705
AMB_RS21710: AMB_RS21710 - hypothetical protein, at 4,700,256 to 4,700,459
_RS21710
Position (kb) 4698
4699
4700 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 4697.931 kb on + strand at 4697.931 kb on + strand at 4697.932 kb on - strand at 4698.006 kb on + strand at 4698.006 kb on + strand at 4698.011 kb on - strand at 4698.046 kb on + strand at 4698.051 kb on - strand at 4698.106 kb on + strand, within AMB_RS24715 at 4698.124 kb on + strand, within AMB_RS24715 at 4698.198 kb on + strand, within AMB_RS24715 at 4698.231 kb on - strand, within AMB_RS24715 at 4698.280 kb on + strand, within AMB_RS24715 at 4698.325 kb on + strand, within AMB_RS24715 at 4698.367 kb on + strand, within AMB_RS24715 at 4698.428 kb on + strand, within AMB_RS24715 at 4698.428 kb on + strand, within AMB_RS24715 at 4698.429 kb on - strand, within AMB_RS24715 at 4698.458 kb on + strand, within AMB_RS24715 at 4698.459 kb on - strand, within AMB_RS24715 at 4698.459 kb on - strand, within AMB_RS24715 at 4698.459 kb on - strand, within AMB_RS24715 at 4698.557 kb on - strand, within AMB_RS24715 at 4698.570 kb on + strand, within AMB_RS24715 at 4698.570 kb on + strand, within AMB_RS24715 at 4698.570 kb on + strand, within AMB_RS24715 at 4698.571 kb on - strand, within AMB_RS24715 at 4698.670 kb on + strand, within AMB_RS24715 at 4698.777 kb on + strand at 4698.913 kb on - strand at 4698.963 kb on + strand, within AMB_RS24720 at 4698.964 kb on - strand, within AMB_RS24720 at 4699.029 kb on - strand, within AMB_RS24720 at 4699.029 kb on - strand, within AMB_RS24720 at 4699.029 kb on - strand, within AMB_RS24720 at 4699.143 kb on - strand, within AMB_RS24720 at 4699.174 kb on + strand, within AMB_RS24720 at 4699.182 kb on + strand, within AMB_RS24720 at 4699.182 kb on + strand, within AMB_RS24720 at 4699.183 kb on - strand, within AMB_RS24720 at 4699.186 kb on + strand, within AMB_RS24720 at 4699.186 kb on + strand, within AMB_RS24720 at 4699.187 kb on - strand, within AMB_RS24720 at 4699.187 kb on - strand, within AMB_RS24720 at 4699.217 kb on + strand, within AMB_RS24720 at 4699.217 kb on + strand, within AMB_RS24720 at 4699.218 kb on - strand, within AMB_RS24720 at 4699.276 kb on + strand, within AMB_RS24720 at 4699.277 kb on - strand, within AMB_RS24720 at 4699.277 kb on - strand, within AMB_RS24720 at 4699.292 kb on + strand, within AMB_RS24720 at 4699.293 kb on - strand, within AMB_RS24720 at 4699.322 kb on + strand, within AMB_RS24720 at 4699.323 kb on - strand, within AMB_RS24720 at 4699.337 kb on + strand, within AMB_RS24720 at 4699.337 kb on + strand, within AMB_RS24720 at 4699.337 kb on + strand, within AMB_RS24720 at 4699.338 kb on - strand, within AMB_RS24720 at 4699.338 kb on - strand, within AMB_RS24720 at 4699.361 kb on + strand, within AMB_RS24720 at 4699.362 kb on - strand, within AMB_RS24720 at 4699.362 kb on - strand, within AMB_RS24720 at 4699.429 kb on - strand, within AMB_RS24720 at 4699.496 kb on - strand at 4699.527 kb on - strand at 4699.535 kb on - strand at 4699.551 kb on - strand at 4699.578 kb on + strand at 4699.578 kb on + strand at 4699.578 kb on + strand at 4699.579 kb on - strand at 4699.579 kb on - strand at 4699.579 kb on - strand at 4699.579 kb on - strand at 4699.598 kb on + strand at 4699.598 kb on + strand at 4699.598 kb on + strand at 4699.599 kb on - strand at 4699.599 kb on - strand at 4699.737 kb on - strand, within AMB_RS21705 at 4699.737 kb on - strand, within AMB_RS21705 at 4699.737 kb on - strand, within AMB_RS21705 at 4699.737 kb on - strand, within AMB_RS21705 at 4699.737 kb on - strand, within AMB_RS21705 at 4699.737 kb on - strand, within AMB_RS21705 at 4699.739 kb on - strand, within AMB_RS21705 at 4699.739 kb on - strand, within AMB_RS21705 at 4699.739 kb on - strand, within AMB_RS21705 at 4699.739 kb on - strand, within AMB_RS21705 at 4699.739 kb on - strand, within AMB_RS21705 at 4699.739 kb on - strand, within AMB_RS21705 at 4699.750 kb on + strand, within AMB_RS21705 at 4699.830 kb on + strand, within AMB_RS21705 at 4699.908 kb on - strand, within AMB_RS21705 at 4699.908 kb on - strand, within AMB_RS21705 at 4700.006 kb on + strand, within AMB_RS21705 at 4700.006 kb on + strand, within AMB_RS21705 at 4700.006 kb on + strand, within AMB_RS21705 at 4700.007 kb on - strand, within AMB_RS21705 at 4700.007 kb on - strand, within AMB_RS21705 at 4700.007 kb on - strand, within AMB_RS21705 at 4700.007 kb on - strand, within AMB_RS21705 at 4700.007 kb on - strand, within AMB_RS21705 at 4700.098 kb on + strand at 4700.319 kb on + strand, within AMB_RS21710 at 4700.320 kb on - strand, within AMB_RS21710 at 4700.442 kb on - strand at 4700.442 kb on - strand at 4700.442 kb on - strand at 4700.492 kb on + strand at 4700.492 kb on + strand at 4700.492 kb on + strand at 4700.493 kb on - strand at 4700.493 kb on - strand at 4700.493 kb on - strand at 4700.496 kb on + strand at 4700.496 kb on + strand at 4700.497 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 4,697,931 + +0.6 4,697,931 + -0.1 4,697,932 - +1.2 4,698,006 + +2.3 4,698,006 + +1.9 4,698,011 - -0.4 4,698,046 + +2.7 4,698,051 - -0.9 4,698,106 + AMB_RS24715 0.14 +2.1 4,698,124 + AMB_RS24715 0.16 -0.9 4,698,198 + AMB_RS24715 0.24 +1.9 4,698,231 - AMB_RS24715 0.28 +1.9 4,698,280 + AMB_RS24715 0.34 +1.8 4,698,325 + AMB_RS24715 0.39 +1.6 4,698,367 + AMB_RS24715 0.44 +2.0 4,698,428 + AMB_RS24715 0.51 +0.0 4,698,428 + AMB_RS24715 0.51 +0.8 4,698,429 - AMB_RS24715 0.51 +1.9 4,698,458 + AMB_RS24715 0.55 -0.4 4,698,459 - AMB_RS24715 0.55 +0.3 4,698,459 - AMB_RS24715 0.55 +2.2 4,698,459 - AMB_RS24715 0.55 +2.0 4,698,557 - AMB_RS24715 0.66 +0.3 4,698,570 + AMB_RS24715 0.68 +0.3 4,698,570 + AMB_RS24715 0.68 +2.1 4,698,570 + AMB_RS24715 0.68 +1.9 4,698,571 - AMB_RS24715 0.68 +1.9 4,698,670 + AMB_RS24715 0.79 +2.1 4,698,777 + -0.1 4,698,913 - +1.5 4,698,963 + AMB_RS24720 0.16 -0.4 4,698,964 - AMB_RS24720 0.16 +0.3 4,699,029 - AMB_RS24720 0.26 -0.7 4,699,029 - AMB_RS24720 0.26 +1.7 4,699,029 - AMB_RS24720 0.26 -1.4 4,699,143 - AMB_RS24720 0.42 +2.3 4,699,174 + AMB_RS24720 0.47 +2.0 4,699,182 + AMB_RS24720 0.48 +2.2 4,699,182 + AMB_RS24720 0.48 -0.7 4,699,183 - AMB_RS24720 0.48 -1.1 4,699,186 + AMB_RS24720 0.49 +1.9 4,699,186 + AMB_RS24720 0.49 +0.9 4,699,187 - AMB_RS24720 0.49 +1.6 4,699,187 - AMB_RS24720 0.49 -1.8 4,699,217 + AMB_RS24720 0.53 -0.9 4,699,217 + AMB_RS24720 0.53 +1.9 4,699,218 - AMB_RS24720 0.53 +0.9 4,699,276 + AMB_RS24720 0.62 +0.8 4,699,277 - AMB_RS24720 0.62 -0.7 4,699,277 - AMB_RS24720 0.62 +2.2 4,699,292 + AMB_RS24720 0.64 -1.4 4,699,293 - AMB_RS24720 0.64 +0.3 4,699,322 + AMB_RS24720 0.69 -0.4 4,699,323 - AMB_RS24720 0.69 -2.6 4,699,337 + AMB_RS24720 0.71 +1.9 4,699,337 + AMB_RS24720 0.71 +1.6 4,699,337 + AMB_RS24720 0.71 -0.7 4,699,338 - AMB_RS24720 0.71 +1.8 4,699,338 - AMB_RS24720 0.71 +1.9 4,699,361 + AMB_RS24720 0.74 +1.8 4,699,362 - AMB_RS24720 0.74 -1.4 4,699,362 - AMB_RS24720 0.74 -0.4 4,699,429 - AMB_RS24720 0.84 +1.3 4,699,496 - +1.9 4,699,527 - +2.1 4,699,535 - +0.1 4,699,551 - -0.9 4,699,578 + +0.1 4,699,578 + -0.1 4,699,578 + +0.3 4,699,579 - -0.7 4,699,579 - -1.1 4,699,579 - -4.9 4,699,579 - +0.2 4,699,598 + -0.4 4,699,598 + -2.4 4,699,598 + -4.4 4,699,599 - -0.4 4,699,599 - -2.4 4,699,737 - AMB_RS21705 0.33 +0.3 4,699,737 - AMB_RS21705 0.33 +0.1 4,699,737 - AMB_RS21705 0.33 +1.9 4,699,737 - AMB_RS21705 0.33 -1.8 4,699,737 - AMB_RS21705 0.33 -1.4 4,699,737 - AMB_RS21705 0.33 -0.4 4,699,739 - AMB_RS21705 0.34 -1.3 4,699,739 - AMB_RS21705 0.34 +0.3 4,699,739 - AMB_RS21705 0.34 -0.4 4,699,739 - AMB_RS21705 0.34 +0.2 4,699,739 - AMB_RS21705 0.34 -1.3 4,699,739 - AMB_RS21705 0.34 -0.7 4,699,750 + AMB_RS21705 0.35 -0.3 4,699,830 + AMB_RS21705 0.50 +1.9 4,699,908 - AMB_RS21705 0.63 -0.4 4,699,908 - AMB_RS21705 0.63 +0.8 4,700,006 + AMB_RS21705 0.81 +0.3 4,700,006 + AMB_RS21705 0.81 -0.3 4,700,006 + AMB_RS21705 0.81 -0.3 4,700,007 - AMB_RS21705 0.81 -0.6 4,700,007 - AMB_RS21705 0.81 -0.7 4,700,007 - AMB_RS21705 0.81 -4.8 4,700,007 - AMB_RS21705 0.81 -3.6 4,700,007 - AMB_RS21705 0.81 +1.0 4,700,098 + +0.3 4,700,319 + AMB_RS21710 0.31 -1.0 4,700,320 - AMB_RS21710 0.31 -0.3 4,700,442 - -1.5 4,700,442 - -1.1 4,700,442 - -3.6 4,700,492 + +0.3 4,700,492 + +0.9 4,700,492 + +4.3 4,700,493 - +0.9 4,700,493 - -0.1 4,700,493 - -0.7 4,700,496 + +0.3 4,700,496 + -0.6 4,700,497 - -1.4
Or see this region's nucleotide sequence