Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS23280

Experiment: 30_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS23275 and AMB_RS07255 are separated by 124 nucleotidesAMB_RS07255 and AMB_RS23280 overlap by 178 nucleotidesAMB_RS23280 and AMB_RS07265 overlap by 27 nucleotidesAMB_RS07265 and AMB_RS24245 are separated by 26 nucleotides AMB_RS23275: AMB_RS23275 - class I SAM-dependent methyltransferase, at 1,564,541 to 1,565,485 _RS23275 AMB_RS07255: AMB_RS07255 - nucleoside-diphosphate sugar epimerase, at 1,565,610 to 1,566,572 _RS07255 AMB_RS23280: AMB_RS23280 - glycosyltransferase family 1 protein, at 1,566,395 to 1,567,732 _RS23280 AMB_RS07265: AMB_RS07265 - glycosyltransferase, at 1,567,706 to 1,568,473 _RS07265 AMB_RS24245: AMB_RS24245 - hypothetical protein, at 1,568,500 to 1,568,772 _RS24245 Position (kb) 1566 1567 1568Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3 4 5at 1565.503 kb on - strandat 1565.535 kb on + strandat 1565.536 kb on - strandat 1565.578 kb on + strandat 1565.579 kb on - strandat 1565.622 kb on + strandat 1565.622 kb on + strandat 1565.623 kb on - strandat 1565.623 kb on - strandat 1565.623 kb on - strandat 1565.979 kb on + strand, within AMB_RS07255at 1565.979 kb on + strand, within AMB_RS07255at 1565.979 kb on + strand, within AMB_RS07255at 1566.039 kb on + strand, within AMB_RS07255at 1566.039 kb on + strand, within AMB_RS07255at 1566.039 kb on + strand, within AMB_RS07255at 1566.039 kb on + strand, within AMB_RS07255at 1566.119 kb on + strand, within AMB_RS07255at 1566.119 kb on + strand, within AMB_RS07255at 1566.119 kb on + strand, within AMB_RS07255at 1566.162 kb on + strand, within AMB_RS07255at 1566.162 kb on + strand, within AMB_RS07255at 1566.162 kb on + strand, within AMB_RS07255at 1566.163 kb on - strand, within AMB_RS07255at 1566.163 kb on - strand, within AMB_RS07255at 1566.164 kb on + strand, within AMB_RS07255at 1566.164 kb on + strand, within AMB_RS07255at 1566.164 kb on + strand, within AMB_RS07255at 1566.164 kb on + strand, within AMB_RS07255at 1566.164 kb on + strand, within AMB_RS07255at 1566.164 kb on + strand, within AMB_RS07255at 1566.164 kb on + strand, within AMB_RS07255at 1566.164 kb on + strand, within AMB_RS07255at 1566.165 kb on - strand, within AMB_RS07255at 1566.165 kb on - strand, within AMB_RS07255at 1566.165 kb on - strand, within AMB_RS07255at 1566.165 kb on - strand, within AMB_RS07255at 1566.165 kb on - strand, within AMB_RS07255at 1566.165 kb on - strand, within AMB_RS07255at 1566.165 kb on - strand, within AMB_RS07255at 1566.272 kb on - strand, within AMB_RS07255at 1566.299 kb on - strand, within AMB_RS07255at 1566.333 kb on + strand, within AMB_RS07255at 1566.333 kb on + strand, within AMB_RS07255at 1566.334 kb on - strand, within AMB_RS07255at 1566.334 kb on - strand, within AMB_RS07255at 1566.334 kb on - strand, within AMB_RS07255at 1566.722 kb on + strand, within AMB_RS23280at 1566.722 kb on + strand, within AMB_RS23280at 1566.722 kb on + strand, within AMB_RS23280at 1566.722 kb on + strand, within AMB_RS23280at 1566.722 kb on + strand, within AMB_RS23280at 1566.723 kb on - strand, within AMB_RS23280at 1566.723 kb on - strand, within AMB_RS23280at 1566.723 kb on - strand, within AMB_RS23280at 1566.723 kb on - strand, within AMB_RS23280at 1566.723 kb on - strand, within AMB_RS23280at 1566.723 kb on - strand, within AMB_RS23280at 1566.725 kb on - strand, within AMB_RS23280at 1566.725 kb on - strand, within AMB_RS23280at 1566.784 kb on + strand, within AMB_RS23280at 1566.785 kb on - strand, within AMB_RS23280at 1566.794 kb on + strand, within AMB_RS23280at 1566.899 kb on + strand, within AMB_RS23280at 1566.899 kb on + strand, within AMB_RS23280at 1566.899 kb on + strand, within AMB_RS23280at 1566.900 kb on - strand, within AMB_RS23280at 1566.900 kb on - strand, within AMB_RS23280at 1567.071 kb on - strand, within AMB_RS23280at 1567.420 kb on + strand, within AMB_RS23280at 1567.420 kb on + strand, within AMB_RS23280at 1567.420 kb on + strand, within AMB_RS23280at 1567.421 kb on - strand, within AMB_RS23280at 1567.421 kb on - strand, within AMB_RS23280at 1567.697 kb on + strandat 1567.697 kb on + strandat 1567.698 kb on - strandat 1567.698 kb on - strandat 1567.698 kb on - strandat 1567.698 kb on - strandat 1567.698 kb on - strandat 1567.710 kb on - strandat 1568.126 kb on + strand, within AMB_RS07265at 1568.214 kb on + strand, within AMB_RS07265at 1568.214 kb on + strand, within AMB_RS07265at 1568.362 kb on + strand, within AMB_RS07265at 1568.362 kb on + strand, within AMB_RS07265at 1568.362 kb on + strand, within AMB_RS07265at 1568.362 kb on + strand, within AMB_RS07265at 1568.362 kb on + strand, within AMB_RS07265at 1568.362 kb on + strand, within AMB_RS07265at 1568.362 kb on + strand, within AMB_RS07265at 1568.362 kb on + strand, within AMB_RS07265at 1568.362 kb on + strand, within AMB_RS07265at 1568.363 kb on - strand, within AMB_RS07265at 1568.363 kb on - strand, within AMB_RS07265at 1568.363 kb on - strand, within AMB_RS07265at 1568.363 kb on - strand, within AMB_RS07265at 1568.363 kb on - strand, within AMB_RS07265at 1568.363 kb on - strand, within AMB_RS07265at 1568.363 kb on - strand, within AMB_RS07265at 1568.363 kb on - strand, within AMB_RS07265at 1568.364 kb on + strand, within AMB_RS07265at 1568.365 kb on - strand, within AMB_RS07265at 1568.365 kb on - strand, within AMB_RS07265at 1568.365 kb on - strand, within AMB_RS07265at 1568.499 kb on - strandat 1568.549 kb on + strand, within AMB_RS24245at 1568.549 kb on + strand, within AMB_RS24245at 1568.549 kb on + strand, within AMB_RS24245at 1568.549 kb on + strand, within AMB_RS24245at 1568.550 kb on - strand, within AMB_RS24245at 1568.550 kb on - strand, within AMB_RS24245at 1568.550 kb on - strand, within AMB_RS24245at 1568.550 kb on - strand, within AMB_RS24245

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_1
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1,565,503 - -0.1
1,565,535 + +1.3
1,565,536 - -1.3
1,565,578 + -0.8
1,565,579 - -4.3
1,565,622 + -0.1
1,565,622 + -2.4
1,565,623 - -6.0
1,565,623 - -1.3
1,565,623 - -0.4
1,565,979 + AMB_RS07255 0.38 +0.5
1,565,979 + AMB_RS07255 0.38 -0.0
1,565,979 + AMB_RS07255 0.38 -1.5
1,566,039 + AMB_RS07255 0.45 -2.7
1,566,039 + AMB_RS07255 0.45 -1.3
1,566,039 + AMB_RS07255 0.45 -1.1
1,566,039 + AMB_RS07255 0.45 -4.4
1,566,119 + AMB_RS07255 0.53 -2.1
1,566,119 + AMB_RS07255 0.53 -0.2
1,566,119 + AMB_RS07255 0.53 -0.5
1,566,162 + AMB_RS07255 0.57 +1.1
1,566,162 + AMB_RS07255 0.57 -1.9
1,566,162 + AMB_RS07255 0.57 -1.3
1,566,163 - AMB_RS07255 0.57 +0.3
1,566,163 - AMB_RS07255 0.57 -1.1
1,566,164 + AMB_RS07255 0.58 -4.7
1,566,164 + AMB_RS07255 0.58 +0.4
1,566,164 + AMB_RS07255 0.58 +1.7
1,566,164 + AMB_RS07255 0.58 +1.5
1,566,164 + AMB_RS07255 0.58 -1.1
1,566,164 + AMB_RS07255 0.58 -0.0
1,566,164 + AMB_RS07255 0.58 -3.8
1,566,164 + AMB_RS07255 0.58 -0.3
1,566,165 - AMB_RS07255 0.58 -1.3
1,566,165 - AMB_RS07255 0.58 -0.5
1,566,165 - AMB_RS07255 0.58 -1.1
1,566,165 - AMB_RS07255 0.58 -1.1
1,566,165 - AMB_RS07255 0.58 +1.5
1,566,165 - AMB_RS07255 0.58 +0.8
1,566,165 - AMB_RS07255 0.58 -1.7
1,566,272 - AMB_RS07255 0.69 +0.1
1,566,299 - AMB_RS07255 0.72 -2.8
1,566,333 + AMB_RS07255 0.75 +0.1
1,566,333 + AMB_RS07255 0.75 -1.1
1,566,334 - AMB_RS07255 0.75 +0.8
1,566,334 - AMB_RS07255 0.75 +0.7
1,566,334 - AMB_RS07255 0.75 -1.2
1,566,722 + AMB_RS23280 0.24 +4.8
1,566,722 + AMB_RS23280 0.24 -1.3
1,566,722 + AMB_RS23280 0.24 -0.4
1,566,722 + AMB_RS23280 0.24 -0.8
1,566,722 + AMB_RS23280 0.24 +0.0
1,566,723 - AMB_RS23280 0.25 -3.6
1,566,723 - AMB_RS23280 0.25 -0.1
1,566,723 - AMB_RS23280 0.25 +0.6
1,566,723 - AMB_RS23280 0.25 -2.3
1,566,723 - AMB_RS23280 0.25 +1.7
1,566,723 - AMB_RS23280 0.25 +0.9
1,566,725 - AMB_RS23280 0.25 -1.9
1,566,725 - AMB_RS23280 0.25 -1.8
1,566,784 + AMB_RS23280 0.29 -1.6
1,566,785 - AMB_RS23280 0.29 +0.0
1,566,794 + AMB_RS23280 0.30 -3.8
1,566,899 + AMB_RS23280 0.38 -2.9
1,566,899 + AMB_RS23280 0.38 -0.1
1,566,899 + AMB_RS23280 0.38 -2.1
1,566,900 - AMB_RS23280 0.38 -0.5
1,566,900 - AMB_RS23280 0.38 -1.4
1,567,071 - AMB_RS23280 0.51 -1.3
1,567,420 + AMB_RS23280 0.77 -0.8
1,567,420 + AMB_RS23280 0.77 -4.0
1,567,420 + AMB_RS23280 0.77 -0.1
1,567,421 - AMB_RS23280 0.77 -3.6
1,567,421 - AMB_RS23280 0.77 -3.8
1,567,697 + +0.7
1,567,697 + +0.5
1,567,698 - -2.9
1,567,698 - -0.5
1,567,698 - -2.4
1,567,698 - +0.7
1,567,698 - +1.5
1,567,710 - -0.2
1,568,126 + AMB_RS07265 0.55 -0.8
1,568,214 + AMB_RS07265 0.66 -0.1
1,568,214 + AMB_RS07265 0.66 -2.4
1,568,362 + AMB_RS07265 0.85 -3.5
1,568,362 + AMB_RS07265 0.85 +0.8
1,568,362 + AMB_RS07265 0.85 -1.6
1,568,362 + AMB_RS07265 0.85 -0.1
1,568,362 + AMB_RS07265 0.85 -1.5
1,568,362 + AMB_RS07265 0.85 -5.5
1,568,362 + AMB_RS07265 0.85 -0.1
1,568,362 + AMB_RS07265 0.85 +4.6
1,568,362 + AMB_RS07265 0.85 -2.4
1,568,363 - AMB_RS07265 0.86 -0.2
1,568,363 - AMB_RS07265 0.86 +0.3
1,568,363 - AMB_RS07265 0.86 -0.8
1,568,363 - AMB_RS07265 0.86 -0.8
1,568,363 - AMB_RS07265 0.86 -1.1
1,568,363 - AMB_RS07265 0.86 -2.2
1,568,363 - AMB_RS07265 0.86 -0.8
1,568,363 - AMB_RS07265 0.86 -0.8
1,568,364 + AMB_RS07265 0.86 -2.1
1,568,365 - AMB_RS07265 0.86 -0.3
1,568,365 - AMB_RS07265 0.86 -1.9
1,568,365 - AMB_RS07265 0.86 -2.6
1,568,499 - -0.7
1,568,549 + AMB_RS24245 0.18 +0.0
1,568,549 + AMB_RS24245 0.18 -1.5
1,568,549 + AMB_RS24245 0.18 -2.2
1,568,549 + AMB_RS24245 0.18 -2.2
1,568,550 - AMB_RS24245 0.18 -0.8
1,568,550 - AMB_RS24245 0.18 -1.5
1,568,550 - AMB_RS24245 0.18 -1.5
1,568,550 - AMB_RS24245 0.18 -1.1

Or see this region's nucleotide sequence