Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22750

Experiment: 30_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22745 and AMB_RS22750 are separated by 307 nucleotidesAMB_RS22750 and AMB_RS22755 are separated by 26 nucleotides AMB_RS22745: AMB_RS22745 - 4-hydroxy-tetrahydrodipicolinate reductase, at 4,910,148 to 4,910,945 _RS22745 AMB_RS22750: AMB_RS22750 - nucleotide exchange factor GrpE, at 4,911,253 to 4,911,864 _RS22750 AMB_RS22755: AMB_RS22755 - heat-inducible transcriptional repressor HrcA, at 4,911,891 to 4,912,955 _RS22755 Position (kb) 4911 4912Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4910.995 kb on - strandat 4910.995 kb on - strandat 4911.016 kb on - strandat 4911.016 kb on - strandat 4911.112 kb on - strandat 4911.132 kb on + strandat 4911.133 kb on - strandat 4911.133 kb on - strandat 4911.133 kb on - strandat 4911.181 kb on - strandat 4911.192 kb on + strandat 4911.935 kb on - strandat 4911.961 kb on + strandat 4911.962 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_1
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4,910,995 - +0.9
4,910,995 - -0.3
4,911,016 - -2.4
4,911,016 - +1.2
4,911,112 - +0.3
4,911,132 + -0.3
4,911,133 - -0.7
4,911,133 - -0.5
4,911,133 - -2.2
4,911,181 - +0.9
4,911,192 + -0.7
4,911,935 - -0.9
4,911,961 + -2.0
4,911,962 - -3.9

Or see this region's nucleotide sequence