Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22540 and AMB_RS22545 are separated by 99 nucleotides AMB_RS22545 and AMB_RS22550 are separated by 58 nucleotides AMB_RS22550 and AMB_RS22555 overlap by 4 nucleotides
AMB_RS22540: AMB_RS22540 - alpha-hydroxy-acid oxidizing protein, at 4,867,425 to 4,868,579
_RS22540
AMB_RS22545: AMB_RS22545 - D-alanyl-D-alanine dipeptidase, at 4,868,679 to 4,869,248
_RS22545
AMB_RS22550: AMB_RS22550 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 4,869,307 to 4,869,963
_RS22550
AMB_RS22555: AMB_RS22555 - N-acetyltransferase, at 4,869,960 to 4,870,439
_RS22555
Position (kb) 4868
4869
4870 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4867.682 kb on - strand, within AMB_RS22540 at 4867.815 kb on + strand, within AMB_RS22540 at 4867.815 kb on + strand, within AMB_RS22540 at 4867.815 kb on + strand, within AMB_RS22540 at 4868.058 kb on + strand, within AMB_RS22540 at 4868.059 kb on - strand, within AMB_RS22540 at 4868.059 kb on - strand, within AMB_RS22540 at 4868.424 kb on + strand, within AMB_RS22540 at 4868.424 kb on + strand, within AMB_RS22540 at 4868.424 kb on + strand, within AMB_RS22540 at 4868.425 kb on - strand, within AMB_RS22540 at 4868.425 kb on - strand, within AMB_RS22540 at 4868.425 kb on - strand, within AMB_RS22540 at 4868.425 kb on - strand, within AMB_RS22540 at 4868.425 kb on - strand, within AMB_RS22540 at 4868.425 kb on - strand, within AMB_RS22540 at 4868.425 kb on - strand, within AMB_RS22540 at 4868.428 kb on - strand, within AMB_RS22540 at 4868.755 kb on + strand, within AMB_RS22545 at 4868.756 kb on - strand, within AMB_RS22545 at 4868.776 kb on + strand, within AMB_RS22545 at 4868.776 kb on + strand, within AMB_RS22545 at 4868.776 kb on + strand, within AMB_RS22545 at 4868.776 kb on + strand, within AMB_RS22545 at 4868.776 kb on + strand, within AMB_RS22545 at 4868.776 kb on + strand, within AMB_RS22545 at 4868.776 kb on + strand, within AMB_RS22545 at 4868.776 kb on + strand, within AMB_RS22545 at 4868.777 kb on - strand, within AMB_RS22545 at 4868.777 kb on - strand, within AMB_RS22545 at 4868.777 kb on - strand, within AMB_RS22545 at 4869.154 kb on + strand, within AMB_RS22545 at 4869.155 kb on - strand, within AMB_RS22545 at 4869.190 kb on + strand, within AMB_RS22545 at 4869.190 kb on + strand, within AMB_RS22545 at 4869.190 kb on + strand, within AMB_RS22545 at 4869.191 kb on - strand, within AMB_RS22545 at 4869.280 kb on + strand at 4869.280 kb on + strand at 4869.280 kb on + strand at 4869.282 kb on + strand at 4870.020 kb on - strand, within AMB_RS22555 at 4870.020 kb on - strand, within AMB_RS22555 at 4870.020 kb on - strand, within AMB_RS22555 at 4870.020 kb on - strand, within AMB_RS22555
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 4,867,682 - AMB_RS22540 0.22 +0.1 4,867,815 + AMB_RS22540 0.34 -0.3 4,867,815 + AMB_RS22540 0.34 -0.1 4,867,815 + AMB_RS22540 0.34 +1.9 4,868,058 + AMB_RS22540 0.55 -0.7 4,868,059 - AMB_RS22540 0.55 -0.4 4,868,059 - AMB_RS22540 0.55 -0.1 4,868,424 + AMB_RS22540 0.86 +0.5 4,868,424 + AMB_RS22540 0.86 -0.9 4,868,424 + AMB_RS22540 0.86 -0.4 4,868,425 - AMB_RS22540 0.87 +1.6 4,868,425 - AMB_RS22540 0.87 -1.7 4,868,425 - AMB_RS22540 0.87 -0.2 4,868,425 - AMB_RS22540 0.87 -0.9 4,868,425 - AMB_RS22540 0.87 -2.6 4,868,425 - AMB_RS22540 0.87 -2.0 4,868,425 - AMB_RS22540 0.87 -0.9 4,868,428 - AMB_RS22540 0.87 -0.8 4,868,755 + AMB_RS22545 0.13 +0.5 4,868,756 - AMB_RS22545 0.14 -1.9 4,868,776 + AMB_RS22545 0.17 -0.9 4,868,776 + AMB_RS22545 0.17 -0.1 4,868,776 + AMB_RS22545 0.17 -1.3 4,868,776 + AMB_RS22545 0.17 -0.4 4,868,776 + AMB_RS22545 0.17 +0.9 4,868,776 + AMB_RS22545 0.17 -0.1 4,868,776 + AMB_RS22545 0.17 -2.1 4,868,776 + AMB_RS22545 0.17 -0.4 4,868,777 - AMB_RS22545 0.17 -1.1 4,868,777 - AMB_RS22545 0.17 +0.3 4,868,777 - AMB_RS22545 0.17 +0.7 4,869,154 + AMB_RS22545 0.83 +0.5 4,869,155 - AMB_RS22545 0.84 +0.1 4,869,190 + AMB_RS22545 0.90 -1.8 4,869,190 + AMB_RS22545 0.90 -1.4 4,869,190 + AMB_RS22545 0.90 -4.2 4,869,191 - AMB_RS22545 0.90 -0.4 4,869,280 + -0.4 4,869,280 + +0.3 4,869,280 + -1.1 4,869,282 + +1.9 4,870,020 - AMB_RS22555 0.12 -1.1 4,870,020 - AMB_RS22555 0.12 +0.3 4,870,020 - AMB_RS22555 0.12 -1.9 4,870,020 - AMB_RS22555 0.12 +1.6
Or see this region's nucleotide sequence