Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22210 and AMB_RS22215 are separated by 105 nucleotides AMB_RS22215 and AMB_RS22220 are separated by 20 nucleotides AMB_RS22220 and AMB_RS22225 are separated by 10 nucleotides AMB_RS22225 and AMB_RS22230 overlap by 1 nucleotides AMB_RS22230 and AMB_RS22235 are separated by 70 nucleotides
AMB_RS22210: AMB_RS22210 - adenosylhomocysteinase, at 4,793,749 to 4,795,140
_RS22210
AMB_RS22215: AMB_RS22215 - cupin domain-containing protein, at 4,795,246 to 4,795,656
_RS22215
AMB_RS22220: AMB_RS22220 - phosphoenolpyruvate--protein phosphotransferase, at 4,795,677 to 4,797,467
_RS22220
AMB_RS22225: AMB_RS22225 - HPr family phosphocarrier protein, at 4,797,478 to 4,797,783
_RS22225
AMB_RS22230: AMB_RS22230 - PTS fructose transporter subunit IIA, at 4,797,783 to 4,798,190
_RS22230
AMB_RS22235: AMB_RS22235 - RNase adaptor protein RapZ, at 4,798,261 to 4,799,181
_RS22235
Position (kb) 4795
4796
4797
4798 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 4795.225 kb on + strand at 4795.247 kb on + strand at 4795.379 kb on + strand, within AMB_RS22215 at 4795.379 kb on + strand, within AMB_RS22215 at 4795.379 kb on + strand, within AMB_RS22215 at 4795.379 kb on + strand, within AMB_RS22215 at 4795.380 kb on - strand, within AMB_RS22215 at 4795.380 kb on - strand, within AMB_RS22215 at 4795.380 kb on - strand, within AMB_RS22215 at 4795.380 kb on - strand, within AMB_RS22215 at 4795.380 kb on - strand, within AMB_RS22215 at 4795.431 kb on + strand, within AMB_RS22215 at 4795.432 kb on - strand, within AMB_RS22215 at 4795.433 kb on + strand, within AMB_RS22215 at 4795.433 kb on + strand, within AMB_RS22215 at 4795.433 kb on + strand, within AMB_RS22215 at 4795.433 kb on + strand, within AMB_RS22215 at 4795.433 kb on + strand, within AMB_RS22215 at 4795.433 kb on + strand, within AMB_RS22215 at 4795.434 kb on - strand, within AMB_RS22215 at 4795.434 kb on - strand, within AMB_RS22215 at 4795.434 kb on - strand, within AMB_RS22215 at 4795.434 kb on - strand, within AMB_RS22215 at 4795.434 kb on - strand, within AMB_RS22215 at 4795.439 kb on + strand, within AMB_RS22215 at 4795.439 kb on + strand, within AMB_RS22215 at 4795.439 kb on + strand, within AMB_RS22215 at 4795.439 kb on + strand, within AMB_RS22215 at 4795.439 kb on + strand, within AMB_RS22215 at 4795.439 kb on + strand, within AMB_RS22215 at 4795.439 kb on + strand, within AMB_RS22215 at 4795.439 kb on + strand, within AMB_RS22215 at 4795.439 kb on + strand, within AMB_RS22215 at 4795.439 kb on + strand, within AMB_RS22215 at 4795.439 kb on + strand, within AMB_RS22215 at 4795.439 kb on + strand, within AMB_RS22215 at 4795.440 kb on - strand, within AMB_RS22215 at 4795.440 kb on - strand, within AMB_RS22215 at 4795.440 kb on - strand, within AMB_RS22215 at 4795.440 kb on - strand, within AMB_RS22215 at 4795.440 kb on - strand, within AMB_RS22215 at 4795.440 kb on - strand, within AMB_RS22215 at 4795.440 kb on - strand, within AMB_RS22215 at 4795.440 kb on - strand, within AMB_RS22215 at 4795.440 kb on - strand, within AMB_RS22215 at 4795.440 kb on - strand, within AMB_RS22215 at 4795.440 kb on - strand, within AMB_RS22215 at 4795.440 kb on - strand, within AMB_RS22215 at 4795.440 kb on - strand, within AMB_RS22215 at 4795.656 kb on + strand at 4795.656 kb on + strand at 4795.656 kb on + strand at 4795.656 kb on + strand at 4795.656 kb on + strand at 4795.656 kb on + strand at 4795.656 kb on + strand at 4795.656 kb on + strand at 4795.656 kb on + strand at 4795.656 kb on + strand at 4795.657 kb on - strand at 4795.657 kb on - strand at 4795.657 kb on - strand at 4795.657 kb on - strand at 4795.657 kb on - strand at 4795.657 kb on - strand at 4795.657 kb on - strand at 4795.657 kb on - strand at 4795.657 kb on - strand at 4795.657 kb on - strand at 4795.657 kb on - strand at 4795.657 kb on - strand at 4795.973 kb on - strand, within AMB_RS22220 at 4795.973 kb on - strand, within AMB_RS22220 at 4796.017 kb on + strand, within AMB_RS22220 at 4796.017 kb on + strand, within AMB_RS22220 at 4796.017 kb on + strand, within AMB_RS22220 at 4796.017 kb on + strand, within AMB_RS22220 at 4796.017 kb on + strand, within AMB_RS22220 at 4796.017 kb on + strand, within AMB_RS22220 at 4796.017 kb on + strand, within AMB_RS22220 at 4796.017 kb on + strand, within AMB_RS22220 at 4796.018 kb on - strand, within AMB_RS22220 at 4796.018 kb on - strand, within AMB_RS22220 at 4796.018 kb on - strand, within AMB_RS22220 at 4796.018 kb on - strand, within AMB_RS22220 at 4796.354 kb on + strand, within AMB_RS22220 at 4796.355 kb on - strand, within AMB_RS22220 at 4796.355 kb on - strand, within AMB_RS22220 at 4796.455 kb on + strand, within AMB_RS22220 at 4796.455 kb on + strand, within AMB_RS22220 at 4796.456 kb on - strand, within AMB_RS22220 at 4796.456 kb on - strand, within AMB_RS22220 at 4796.456 kb on - strand, within AMB_RS22220 at 4796.456 kb on - strand, within AMB_RS22220 at 4796.494 kb on + strand, within AMB_RS22220 at 4796.494 kb on + strand, within AMB_RS22220 at 4796.494 kb on + strand, within AMB_RS22220 at 4796.495 kb on - strand, within AMB_RS22220 at 4796.495 kb on - strand, within AMB_RS22220 at 4796.495 kb on - strand, within AMB_RS22220 at 4796.574 kb on - strand, within AMB_RS22220 at 4796.574 kb on - strand, within AMB_RS22220 at 4796.680 kb on + strand, within AMB_RS22220 at 4796.681 kb on - strand, within AMB_RS22220 at 4796.681 kb on - strand, within AMB_RS22220 at 4796.829 kb on - strand, within AMB_RS22220 at 4797.031 kb on + strand, within AMB_RS22220 at 4797.032 kb on - strand, within AMB_RS22220 at 4797.032 kb on - strand, within AMB_RS22220 at 4797.170 kb on - strand, within AMB_RS22220 at 4797.184 kb on + strand, within AMB_RS22220 at 4797.355 kb on + strand at 4797.355 kb on + strand at 4797.355 kb on + strand at 4797.355 kb on + strand at 4797.356 kb on - strand at 4797.356 kb on - strand at 4797.785 kb on - strand at 4797.785 kb on - strand at 4797.785 kb on - strand at 4797.785 kb on - strand at 4797.785 kb on - strand at 4798.333 kb on + strand at 4798.333 kb on + strand at 4798.398 kb on - strand, within AMB_RS22235
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 4,795,225 + -1.5 4,795,247 + -1.4 4,795,379 + AMB_RS22215 0.32 +0.4 4,795,379 + AMB_RS22215 0.32 +0.9 4,795,379 + AMB_RS22215 0.32 +0.7 4,795,379 + AMB_RS22215 0.32 -0.1 4,795,380 - AMB_RS22215 0.33 +1.2 4,795,380 - AMB_RS22215 0.33 -3.2 4,795,380 - AMB_RS22215 0.33 +0.9 4,795,380 - AMB_RS22215 0.33 -1.1 4,795,380 - AMB_RS22215 0.33 +0.4 4,795,431 + AMB_RS22215 0.45 -0.1 4,795,432 - AMB_RS22215 0.45 -2.1 4,795,433 + AMB_RS22215 0.45 +0.3 4,795,433 + AMB_RS22215 0.45 -1.1 4,795,433 + AMB_RS22215 0.45 +0.7 4,795,433 + AMB_RS22215 0.45 -1.1 4,795,433 + AMB_RS22215 0.45 -0.9 4,795,433 + AMB_RS22215 0.45 +0.2 4,795,434 - AMB_RS22215 0.46 -0.1 4,795,434 - AMB_RS22215 0.46 +0.3 4,795,434 - AMB_RS22215 0.46 -0.1 4,795,434 - AMB_RS22215 0.46 -3.8 4,795,434 - AMB_RS22215 0.46 -0.5 4,795,439 + AMB_RS22215 0.47 -1.7 4,795,439 + AMB_RS22215 0.47 +1.1 4,795,439 + AMB_RS22215 0.47 -1.3 4,795,439 + AMB_RS22215 0.47 -2.9 4,795,439 + AMB_RS22215 0.47 -0.1 4,795,439 + AMB_RS22215 0.47 +1.8 4,795,439 + AMB_RS22215 0.47 -5.5 4,795,439 + AMB_RS22215 0.47 -0.8 4,795,439 + AMB_RS22215 0.47 +0.3 4,795,439 + AMB_RS22215 0.47 -1.4 4,795,439 + AMB_RS22215 0.47 -0.2 4,795,439 + AMB_RS22215 0.47 -1.1 4,795,440 - AMB_RS22215 0.47 +0.2 4,795,440 - AMB_RS22215 0.47 -2.0 4,795,440 - AMB_RS22215 0.47 +0.3 4,795,440 - AMB_RS22215 0.47 -0.2 4,795,440 - AMB_RS22215 0.47 +0.7 4,795,440 - AMB_RS22215 0.47 -0.2 4,795,440 - AMB_RS22215 0.47 +0.8 4,795,440 - AMB_RS22215 0.47 -4.0 4,795,440 - AMB_RS22215 0.47 -1.8 4,795,440 - AMB_RS22215 0.47 -0.7 4,795,440 - AMB_RS22215 0.47 -2.3 4,795,440 - AMB_RS22215 0.47 +1.1 4,795,440 - AMB_RS22215 0.47 +0.5 4,795,656 + -0.6 4,795,656 + +0.9 4,795,656 + -0.2 4,795,656 + -0.1 4,795,656 + -4.0 4,795,656 + -4.3 4,795,656 + -3.0 4,795,656 + -0.4 4,795,656 + -3.6 4,795,656 + -3.7 4,795,657 - +0.9 4,795,657 - +0.2 4,795,657 - -0.4 4,795,657 - -2.7 4,795,657 - +0.9 4,795,657 - -0.3 4,795,657 - -2.5 4,795,657 - -0.5 4,795,657 - -4.1 4,795,657 - -0.5 4,795,657 - -0.1 4,795,657 - -0.4 4,795,973 - AMB_RS22220 0.17 +0.8 4,795,973 - AMB_RS22220 0.17 -1.3 4,796,017 + AMB_RS22220 0.19 -0.4 4,796,017 + AMB_RS22220 0.19 -0.7 4,796,017 + AMB_RS22220 0.19 +0.1 4,796,017 + AMB_RS22220 0.19 -0.7 4,796,017 + AMB_RS22220 0.19 -3.2 4,796,017 + AMB_RS22220 0.19 -0.1 4,796,017 + AMB_RS22220 0.19 -0.7 4,796,017 + AMB_RS22220 0.19 -2.3 4,796,018 - AMB_RS22220 0.19 +1.1 4,796,018 - AMB_RS22220 0.19 -0.8 4,796,018 - AMB_RS22220 0.19 +0.3 4,796,018 - AMB_RS22220 0.19 -1.7 4,796,354 + AMB_RS22220 0.38 -2.2 4,796,355 - AMB_RS22220 0.38 -0.4 4,796,355 - AMB_RS22220 0.38 +0.9 4,796,455 + AMB_RS22220 0.43 +0.5 4,796,455 + AMB_RS22220 0.43 +0.3 4,796,456 - AMB_RS22220 0.43 -2.9 4,796,456 - AMB_RS22220 0.43 -3.1 4,796,456 - AMB_RS22220 0.43 +0.1 4,796,456 - AMB_RS22220 0.43 -1.1 4,796,494 + AMB_RS22220 0.46 -2.8 4,796,494 + AMB_RS22220 0.46 -1.9 4,796,494 + AMB_RS22220 0.46 -0.1 4,796,495 - AMB_RS22220 0.46 -3.4 4,796,495 - AMB_RS22220 0.46 +0.3 4,796,495 - AMB_RS22220 0.46 -0.1 4,796,574 - AMB_RS22220 0.50 +0.3 4,796,574 - AMB_RS22220 0.50 -3.2 4,796,680 + AMB_RS22220 0.56 -0.9 4,796,681 - AMB_RS22220 0.56 -0.7 4,796,681 - AMB_RS22220 0.56 -0.9 4,796,829 - AMB_RS22220 0.64 -0.3 4,797,031 + AMB_RS22220 0.76 -0.4 4,797,032 - AMB_RS22220 0.76 -0.6 4,797,032 - AMB_RS22220 0.76 -0.4 4,797,170 - AMB_RS22220 0.83 -0.4 4,797,184 + AMB_RS22220 0.84 -0.3 4,797,355 + +0.3 4,797,355 + -0.6 4,797,355 + -4.8 4,797,355 + -3.9 4,797,356 - -1.4 4,797,356 - -1.6 4,797,785 - +1.9 4,797,785 - +0.2 4,797,785 - +0.9 4,797,785 - -0.1 4,797,785 - +0.9 4,798,333 + -2.8 4,798,333 + -1.8 4,798,398 - AMB_RS22235 0.15 -0.2
Or see this region's nucleotide sequence