Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21730 and AMB_RS21735 are separated by 12 nucleotides AMB_RS21735 and AMB_RS21740 are separated by 18 nucleotides AMB_RS21740 and AMB_RS21745 are separated by 104 nucleotides
AMB_RS21730: AMB_RS21730 - hypothetical protein, at 4,703,558 to 4,703,830
_RS21730
AMB_RS21735: AMB_RS21735 - hypothetical protein, at 4,703,843 to 4,704,139
_RS21735
AMB_RS21740: AMB_RS21740 - hypothetical protein, at 4,704,158 to 4,704,427
_RS21740
AMB_RS21745: AMB_RS21745 - signal transduction histidine kinase, at 4,704,532 to 4,706,016
_RS21745
Position (kb) 4704
4705 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4703.247 kb on - strand at 4703.299 kb on - strand at 4703.354 kb on + strand at 4703.354 kb on + strand at 4703.535 kb on + strand at 4703.535 kb on + strand at 4703.536 kb on - strand at 4703.536 kb on - strand at 4703.536 kb on - strand at 4703.536 kb on - strand at 4703.559 kb on + strand at 4703.559 kb on + strand at 4703.559 kb on + strand at 4703.560 kb on - strand at 4703.560 kb on - strand at 4703.560 kb on - strand at 4703.560 kb on - strand at 4703.870 kb on - strand at 4703.937 kb on + strand, within AMB_RS21735 at 4703.937 kb on + strand, within AMB_RS21735 at 4703.937 kb on + strand, within AMB_RS21735 at 4703.937 kb on + strand, within AMB_RS21735 at 4703.938 kb on - strand, within AMB_RS21735 at 4703.938 kb on - strand, within AMB_RS21735 at 4703.958 kb on + strand, within AMB_RS21735 at 4703.958 kb on + strand, within AMB_RS21735 at 4703.959 kb on - strand, within AMB_RS21735 at 4703.964 kb on + strand, within AMB_RS21735 at 4703.964 kb on + strand, within AMB_RS21735 at 4704.125 kb on + strand at 4704.126 kb on - strand at 4704.126 kb on - strand at 4704.126 kb on - strand at 4704.159 kb on + strand at 4704.159 kb on + strand at 4704.159 kb on + strand at 4704.159 kb on + strand at 4704.159 kb on + strand at 4704.160 kb on - strand at 4704.160 kb on - strand at 4704.160 kb on - strand at 4704.160 kb on - strand at 4704.427 kb on + strand at 4704.427 kb on + strand at 4704.427 kb on + strand at 4704.427 kb on + strand at 4704.427 kb on + strand at 4704.427 kb on + strand at 4704.427 kb on + strand at 4704.428 kb on - strand at 4704.433 kb on + strand at 4704.434 kb on - strand at 4704.434 kb on - strand at 4704.434 kb on - strand at 4704.434 kb on - strand at 4704.467 kb on + strand at 4704.467 kb on + strand at 4704.467 kb on + strand at 4704.468 kb on - strand at 4704.468 kb on - strand at 4704.474 kb on - strand at 4704.474 kb on - strand at 4704.512 kb on + strand at 4704.513 kb on - strand at 4704.513 kb on - strand at 4704.650 kb on + strand at 4704.651 kb on - strand at 4704.944 kb on + strand, within AMB_RS21745 at 4704.944 kb on + strand, within AMB_RS21745 at 4704.944 kb on + strand, within AMB_RS21745 at 4704.944 kb on + strand, within AMB_RS21745 at 4704.944 kb on + strand, within AMB_RS21745 at 4704.944 kb on + strand, within AMB_RS21745 at 4704.944 kb on + strand, within AMB_RS21745 at 4704.944 kb on + strand, within AMB_RS21745 at 4704.945 kb on - strand, within AMB_RS21745 at 4704.945 kb on - strand, within AMB_RS21745 at 4704.945 kb on - strand, within AMB_RS21745 at 4704.945 kb on - strand, within AMB_RS21745 at 4704.945 kb on - strand, within AMB_RS21745 at 4704.945 kb on - strand, within AMB_RS21745 at 4705.029 kb on + strand, within AMB_RS21745 at 4705.409 kb on + strand, within AMB_RS21745 at 4705.410 kb on - strand, within AMB_RS21745 at 4705.410 kb on - strand, within AMB_RS21745 at 4705.410 kb on - strand, within AMB_RS21745
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 4,703,247 - -0.1 4,703,299 - -0.9 4,703,354 + -3.3 4,703,354 + -2.5 4,703,535 + -0.5 4,703,535 + +0.4 4,703,536 - -1.1 4,703,536 - -1.9 4,703,536 - -0.5 4,703,536 - -4.5 4,703,559 + +0.3 4,703,559 + -0.7 4,703,559 + -0.5 4,703,560 - -2.2 4,703,560 - -1.7 4,703,560 - +0.3 4,703,560 - -0.1 4,703,870 - -0.7 4,703,937 + AMB_RS21735 0.32 +0.0 4,703,937 + AMB_RS21735 0.32 -0.7 4,703,937 + AMB_RS21735 0.32 -0.9 4,703,937 + AMB_RS21735 0.32 +0.2 4,703,938 - AMB_RS21735 0.32 -1.6 4,703,938 - AMB_RS21735 0.32 -0.1 4,703,958 + AMB_RS21735 0.39 -0.1 4,703,958 + AMB_RS21735 0.39 -1.9 4,703,959 - AMB_RS21735 0.39 -2.5 4,703,964 + AMB_RS21735 0.41 +0.3 4,703,964 + AMB_RS21735 0.41 +0.3 4,704,125 + -0.4 4,704,126 - +0.3 4,704,126 - +0.2 4,704,126 - -4.5 4,704,159 + -0.3 4,704,159 + -0.7 4,704,159 + -1.3 4,704,159 + -1.6 4,704,159 + -1.1 4,704,160 - +0.6 4,704,160 - -0.2 4,704,160 - +0.9 4,704,160 - -0.8 4,704,427 + +0.4 4,704,427 + -2.6 4,704,427 + -1.1 4,704,427 + -3.4 4,704,427 + -0.5 4,704,427 + -0.2 4,704,427 + -4.7 4,704,428 - +3.7 4,704,433 + -0.1 4,704,434 - -0.9 4,704,434 - -3.3 4,704,434 - -2.0 4,704,434 - -3.1 4,704,467 + +1.9 4,704,467 + -0.9 4,704,467 + -0.2 4,704,468 - -1.7 4,704,468 - -1.5 4,704,474 - -1.1 4,704,474 - +3.2 4,704,512 + -1.1 4,704,513 - -1.9 4,704,513 - -2.2 4,704,650 + +0.9 4,704,651 - -3.4 4,704,944 + AMB_RS21745 0.28 +0.9 4,704,944 + AMB_RS21745 0.28 -0.8 4,704,944 + AMB_RS21745 0.28 -3.7 4,704,944 + AMB_RS21745 0.28 -1.5 4,704,944 + AMB_RS21745 0.28 +0.3 4,704,944 + AMB_RS21745 0.28 -0.9 4,704,944 + AMB_RS21745 0.28 -2.2 4,704,944 + AMB_RS21745 0.28 +0.5 4,704,945 - AMB_RS21745 0.28 -0.4 4,704,945 - AMB_RS21745 0.28 -0.5 4,704,945 - AMB_RS21745 0.28 -0.4 4,704,945 - AMB_RS21745 0.28 -4.5 4,704,945 - AMB_RS21745 0.28 -0.1 4,704,945 - AMB_RS21745 0.28 -2.1 4,705,029 + AMB_RS21745 0.33 -1.9 4,705,409 + AMB_RS21745 0.59 +0.3 4,705,410 - AMB_RS21745 0.59 -0.1 4,705,410 - AMB_RS21745 0.59 -1.3 4,705,410 - AMB_RS21745 0.59 -2.6
Or see this region's nucleotide sequence