Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21665 and AMB_RS21670 are separated by 82 nucleotides AMB_RS21670 and AMB_RS21675 are separated by 266 nucleotides AMB_RS21675 and AMB_RS21680 are separated by 123 nucleotides AMB_RS21680 and AMB_RS21685 are separated by 135 nucleotides
AMB_RS21665: AMB_RS21665 - hypothetical protein, at 4,692,060 to 4,692,290
_RS21665
AMB_RS21670: AMB_RS21670 - thioredoxin TrxA, at 4,692,373 to 4,692,687
_RS21670
AMB_RS21675: AMB_RS21675 - tRNA-Arg, at 4,692,954 to 4,693,030
_RS21675
AMB_RS21680: AMB_RS21680 - hypothetical protein, at 4,693,154 to 4,694,491
_RS21680
AMB_RS21685: AMB_RS21685 - hypothetical protein, at 4,694,627 to 4,695,088
_RS21685
Position (kb) 4693
4694
4695 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4692.247 kb on + strand, within AMB_RS21665 at 4692.247 kb on + strand, within AMB_RS21665 at 4692.248 kb on - strand, within AMB_RS21665 at 4692.375 kb on - strand at 4692.786 kb on - strand at 4692.786 kb on - strand at 4692.786 kb on - strand at 4692.925 kb on + strand at 4692.925 kb on + strand at 4692.925 kb on + strand at 4692.925 kb on + strand at 4692.925 kb on + strand at 4692.925 kb on + strand at 4692.925 kb on + strand at 4692.927 kb on + strand at 4693.178 kb on + strand at 4693.179 kb on - strand at 4693.179 kb on - strand at 4693.179 kb on - strand at 4693.179 kb on - strand at 4693.179 kb on - strand at 4693.184 kb on + strand at 4693.184 kb on + strand at 4693.185 kb on - strand at 4693.211 kb on + strand at 4693.212 kb on - strand at 4693.249 kb on + strand at 4693.250 kb on - strand at 4693.250 kb on - strand at 4693.487 kb on + strand, within AMB_RS21680 at 4693.487 kb on + strand, within AMB_RS21680 at 4693.487 kb on + strand, within AMB_RS21680 at 4693.487 kb on + strand, within AMB_RS21680 at 4693.487 kb on + strand, within AMB_RS21680 at 4693.488 kb on - strand, within AMB_RS21680 at 4693.488 kb on - strand, within AMB_RS21680 at 4693.547 kb on + strand, within AMB_RS21680 at 4693.547 kb on + strand, within AMB_RS21680 at 4693.613 kb on + strand, within AMB_RS21680 at 4693.613 kb on + strand, within AMB_RS21680 at 4693.613 kb on + strand, within AMB_RS21680 at 4693.613 kb on + strand, within AMB_RS21680 at 4693.613 kb on + strand, within AMB_RS21680 at 4693.613 kb on + strand, within AMB_RS21680 at 4693.614 kb on - strand, within AMB_RS21680 at 4693.614 kb on - strand, within AMB_RS21680 at 4693.614 kb on - strand, within AMB_RS21680 at 4693.614 kb on - strand, within AMB_RS21680 at 4693.618 kb on - strand, within AMB_RS21680 at 4693.618 kb on - strand, within AMB_RS21680 at 4693.618 kb on - strand, within AMB_RS21680 at 4693.652 kb on + strand, within AMB_RS21680 at 4693.688 kb on + strand, within AMB_RS21680 at 4693.688 kb on + strand, within AMB_RS21680 at 4693.859 kb on - strand, within AMB_RS21680 at 4693.974 kb on + strand, within AMB_RS21680 at 4693.974 kb on + strand, within AMB_RS21680 at 4693.974 kb on + strand, within AMB_RS21680 at 4693.974 kb on + strand, within AMB_RS21680 at 4693.974 kb on + strand, within AMB_RS21680 at 4693.974 kb on + strand, within AMB_RS21680 at 4693.975 kb on - strand, within AMB_RS21680 at 4693.975 kb on - strand, within AMB_RS21680 at 4693.975 kb on - strand, within AMB_RS21680 at 4693.975 kb on - strand, within AMB_RS21680 at 4693.975 kb on - strand, within AMB_RS21680 at 4693.975 kb on - strand, within AMB_RS21680 at 4693.975 kb on - strand, within AMB_RS21680 at 4694.048 kb on - strand, within AMB_RS21680 at 4694.083 kb on + strand, within AMB_RS21680 at 4694.083 kb on + strand, within AMB_RS21680 at 4694.084 kb on - strand, within AMB_RS21680 at 4694.084 kb on - strand, within AMB_RS21680 at 4694.241 kb on + strand, within AMB_RS21680 at 4694.241 kb on + strand, within AMB_RS21680 at 4694.241 kb on + strand, within AMB_RS21680 at 4694.241 kb on + strand, within AMB_RS21680 at 4694.242 kb on - strand, within AMB_RS21680 at 4694.242 kb on - strand, within AMB_RS21680 at 4694.242 kb on - strand, within AMB_RS21680 at 4694.242 kb on - strand, within AMB_RS21680 at 4694.264 kb on + strand, within AMB_RS21680 at 4694.264 kb on + strand, within AMB_RS21680 at 4694.264 kb on + strand, within AMB_RS21680 at 4694.265 kb on - strand, within AMB_RS21680 at 4694.265 kb on - strand, within AMB_RS21680 at 4694.282 kb on + strand, within AMB_RS21680 at 4694.283 kb on - strand, within AMB_RS21680 at 4694.283 kb on - strand, within AMB_RS21680 at 4694.283 kb on - strand, within AMB_RS21680 at 4694.325 kb on + strand, within AMB_RS21680 at 4694.326 kb on - strand, within AMB_RS21680 at 4694.336 kb on - strand, within AMB_RS21680 at 4694.344 kb on + strand, within AMB_RS21680 at 4694.344 kb on + strand, within AMB_RS21680 at 4694.369 kb on + strand at 4694.369 kb on + strand at 4694.370 kb on - strand at 4694.388 kb on + strand at 4694.424 kb on - strand at 4694.435 kb on - strand at 4694.435 kb on - strand at 4694.489 kb on + strand at 4694.489 kb on + strand at 4694.489 kb on + strand at 4694.489 kb on + strand at 4694.489 kb on + strand at 4694.489 kb on + strand at 4694.489 kb on + strand at 4694.489 kb on + strand at 4694.489 kb on + strand at 4694.490 kb on - strand at 4694.490 kb on - strand at 4694.490 kb on - strand at 4694.490 kb on - strand at 4694.551 kb on + strand at 4694.552 kb on - strand at 4694.628 kb on + strand at 4695.099 kb on + strand at 4695.100 kb on - strand at 4695.100 kb on - strand at 4695.103 kb on - strand at 4695.143 kb on - strand at 4695.148 kb on + strand at 4695.149 kb on - strand at 4695.153 kb on + strand at 4695.153 kb on + strand at 4695.154 kb on - strand at 4695.154 kb on - strand at 4695.154 kb on - strand at 4695.154 kb on - strand at 4695.174 kb on - strand at 4695.231 kb on - strand at 4695.333 kb on + strand at 4695.429 kb on + strand at 4695.430 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 4,692,247 + AMB_RS21665 0.81 +1.9 4,692,247 + AMB_RS21665 0.81 -1.1 4,692,248 - AMB_RS21665 0.81 -3.8 4,692,375 - +0.9 4,692,786 - -3.5 4,692,786 - -2.2 4,692,786 - -0.9 4,692,925 + -2.2 4,692,925 + -0.2 4,692,925 + -0.3 4,692,925 + +3.1 4,692,925 + +1.9 4,692,925 + +1.6 4,692,925 + -0.9 4,692,927 + -0.7 4,693,178 + -3.8 4,693,179 - +0.6 4,693,179 - -0.7 4,693,179 - -0.7 4,693,179 - -1.1 4,693,179 - -1.6 4,693,184 + -0.1 4,693,184 + -0.4 4,693,185 - -1.3 4,693,211 + -0.1 4,693,212 - -0.9 4,693,249 + -1.8 4,693,250 - -0.7 4,693,250 - -0.1 4,693,487 + AMB_RS21680 0.25 -0.9 4,693,487 + AMB_RS21680 0.25 -2.1 4,693,487 + AMB_RS21680 0.25 -3.1 4,693,487 + AMB_RS21680 0.25 +1.3 4,693,487 + AMB_RS21680 0.25 -4.2 4,693,488 - AMB_RS21680 0.25 +0.1 4,693,488 - AMB_RS21680 0.25 -1.4 4,693,547 + AMB_RS21680 0.29 +0.6 4,693,547 + AMB_RS21680 0.29 -0.9 4,693,613 + AMB_RS21680 0.34 -1.1 4,693,613 + AMB_RS21680 0.34 -1.8 4,693,613 + AMB_RS21680 0.34 -1.4 4,693,613 + AMB_RS21680 0.34 -0.9 4,693,613 + AMB_RS21680 0.34 -0.0 4,693,613 + AMB_RS21680 0.34 -0.3 4,693,614 - AMB_RS21680 0.34 -0.9 4,693,614 - AMB_RS21680 0.34 -0.1 4,693,614 - AMB_RS21680 0.34 +0.0 4,693,614 - AMB_RS21680 0.34 -2.2 4,693,618 - AMB_RS21680 0.35 -0.1 4,693,618 - AMB_RS21680 0.35 -1.4 4,693,618 - AMB_RS21680 0.35 -0.7 4,693,652 + AMB_RS21680 0.37 -0.5 4,693,688 + AMB_RS21680 0.40 -0.7 4,693,688 + AMB_RS21680 0.40 -1.7 4,693,859 - AMB_RS21680 0.53 -0.1 4,693,974 + AMB_RS21680 0.61 -1.7 4,693,974 + AMB_RS21680 0.61 -4.5 4,693,974 + AMB_RS21680 0.61 +0.9 4,693,974 + AMB_RS21680 0.61 -1.7 4,693,974 + AMB_RS21680 0.61 -0.8 4,693,974 + AMB_RS21680 0.61 -0.9 4,693,975 - AMB_RS21680 0.61 -0.9 4,693,975 - AMB_RS21680 0.61 -0.7 4,693,975 - AMB_RS21680 0.61 -1.1 4,693,975 - AMB_RS21680 0.61 -2.9 4,693,975 - AMB_RS21680 0.61 -0.6 4,693,975 - AMB_RS21680 0.61 -0.1 4,693,975 - AMB_RS21680 0.61 -0.8 4,694,048 - AMB_RS21680 0.67 -0.4 4,694,083 + AMB_RS21680 0.69 +0.4 4,694,083 + AMB_RS21680 0.69 -0.4 4,694,084 - AMB_RS21680 0.70 -0.7 4,694,084 - AMB_RS21680 0.70 -1.1 4,694,241 + AMB_RS21680 0.81 -0.6 4,694,241 + AMB_RS21680 0.81 +0.9 4,694,241 + AMB_RS21680 0.81 -0.9 4,694,241 + AMB_RS21680 0.81 +0.3 4,694,242 - AMB_RS21680 0.81 -0.2 4,694,242 - AMB_RS21680 0.81 -3.3 4,694,242 - AMB_RS21680 0.81 +1.1 4,694,242 - AMB_RS21680 0.81 -2.1 4,694,264 + AMB_RS21680 0.83 -1.1 4,694,264 + AMB_RS21680 0.83 -1.7 4,694,264 + AMB_RS21680 0.83 -0.6 4,694,265 - AMB_RS21680 0.83 -1.3 4,694,265 - AMB_RS21680 0.83 -0.4 4,694,282 + AMB_RS21680 0.84 -2.6 4,694,283 - AMB_RS21680 0.84 +1.4 4,694,283 - AMB_RS21680 0.84 -4.4 4,694,283 - AMB_RS21680 0.84 -1.1 4,694,325 + AMB_RS21680 0.88 -0.8 4,694,326 - AMB_RS21680 0.88 -0.3 4,694,336 - AMB_RS21680 0.88 -1.6 4,694,344 + AMB_RS21680 0.89 -3.1 4,694,344 + AMB_RS21680 0.89 -1.3 4,694,369 + -0.7 4,694,369 + -2.5 4,694,370 - -0.1 4,694,388 + -0.4 4,694,424 - +0.4 4,694,435 - -2.1 4,694,435 - -0.1 4,694,489 + -1.1 4,694,489 + +0.9 4,694,489 + -0.0 4,694,489 + -1.1 4,694,489 + -3.5 4,694,489 + -0.1 4,694,489 + -2.1 4,694,489 + -3.4 4,694,489 + -2.3 4,694,490 - -0.9 4,694,490 - -0.9 4,694,490 - -1.4 4,694,490 - +0.9 4,694,551 + -2.8 4,694,552 - -1.4 4,694,628 + -0.1 4,695,099 + -0.8 4,695,100 - -0.4 4,695,100 - -0.7 4,695,103 - -0.4 4,695,143 - -0.5 4,695,148 + +0.9 4,695,149 - -0.7 4,695,153 + -0.8 4,695,153 + +0.3 4,695,154 - +0.3 4,695,154 - +0.2 4,695,154 - +0.3 4,695,154 - -0.7 4,695,174 - -0.7 4,695,231 - -0.9 4,695,333 + -1.4 4,695,429 + +0.5 4,695,430 - -0.7
Or see this region's nucleotide sequence