Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20975

Experiment: 30_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20970 and AMB_RS20975 overlap by 4 nucleotidesAMB_RS20975 and AMB_RS20980 are separated by 68 nucleotides AMB_RS20970: AMB_RS20970 - PAS domain S-box protein, at 4,551,087 to 4,554,863 _RS20970 AMB_RS20975: AMB_RS20975 - C4-dicarboxylate transport sensor protein dctB, at 4,554,860 to 4,556,422 _RS20975 AMB_RS20980: AMB_RS20980 - alpha/beta hydrolase, at 4,556,491 to 4,557,423 _RS20980 Position (kb) 4554 4555 4556 4557Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 4553.878 kb on + strand, within AMB_RS20970at 4553.923 kb on + strand, within AMB_RS20970at 4553.923 kb on + strand, within AMB_RS20970at 4553.923 kb on + strand, within AMB_RS20970at 4553.923 kb on + strand, within AMB_RS20970at 4553.923 kb on + strand, within AMB_RS20970at 4553.923 kb on + strand, within AMB_RS20970at 4553.923 kb on + strand, within AMB_RS20970at 4553.923 kb on + strand, within AMB_RS20970at 4553.923 kb on + strand, within AMB_RS20970at 4553.923 kb on + strand, within AMB_RS20970at 4553.923 kb on + strand, within AMB_RS20970at 4553.923 kb on + strand, within AMB_RS20970at 4553.924 kb on - strand, within AMB_RS20970at 4553.924 kb on - strand, within AMB_RS20970at 4553.924 kb on - strand, within AMB_RS20970at 4553.924 kb on - strand, within AMB_RS20970at 4553.924 kb on - strand, within AMB_RS20970at 4554.295 kb on + strand, within AMB_RS20970at 4554.295 kb on + strand, within AMB_RS20970at 4554.296 kb on - strand, within AMB_RS20970at 4554.715 kb on + strandat 4554.715 kb on + strandat 4554.715 kb on + strandat 4554.715 kb on + strandat 4554.715 kb on + strandat 4554.716 kb on - strandat 4554.716 kb on - strandat 4554.716 kb on - strandat 4554.763 kb on + strandat 4554.764 kb on - strandat 4554.764 kb on - strandat 4554.764 kb on - strandat 4555.245 kb on + strand, within AMB_RS20975at 4555.246 kb on - strand, within AMB_RS20975at 4555.249 kb on + strand, within AMB_RS20975at 4555.249 kb on + strand, within AMB_RS20975at 4555.249 kb on + strand, within AMB_RS20975at 4555.249 kb on + strand, within AMB_RS20975at 4555.249 kb on + strand, within AMB_RS20975at 4555.250 kb on - strand, within AMB_RS20975at 4555.250 kb on - strand, within AMB_RS20975at 4555.395 kb on + strand, within AMB_RS20975at 4555.396 kb on - strand, within AMB_RS20975at 4555.396 kb on - strand, within AMB_RS20975at 4555.569 kb on + strand, within AMB_RS20975at 4555.570 kb on - strand, within AMB_RS20975at 4555.570 kb on - strand, within AMB_RS20975at 4555.570 kb on - strand, within AMB_RS20975at 4555.926 kb on + strand, within AMB_RS20975at 4555.927 kb on - strand, within AMB_RS20975at 4555.965 kb on + strand, within AMB_RS20975at 4555.966 kb on - strand, within AMB_RS20975at 4555.966 kb on - strand, within AMB_RS20975at 4556.227 kb on + strand, within AMB_RS20975at 4556.227 kb on + strand, within AMB_RS20975at 4556.227 kb on + strand, within AMB_RS20975at 4556.227 kb on + strand, within AMB_RS20975at 4556.227 kb on + strand, within AMB_RS20975at 4556.227 kb on + strand, within AMB_RS20975at 4556.228 kb on - strand, within AMB_RS20975at 4556.228 kb on - strand, within AMB_RS20975at 4556.228 kb on - strand, within AMB_RS20975at 4556.480 kb on + strandat 4556.480 kb on + strandat 4556.480 kb on + strandat 4556.481 kb on - strandat 4556.481 kb on - strandat 4556.498 kb on + strandat 4556.498 kb on + strandat 4556.498 kb on + strandat 4556.705 kb on + strand, within AMB_RS20980at 4556.705 kb on + strand, within AMB_RS20980at 4556.705 kb on + strand, within AMB_RS20980at 4556.705 kb on + strand, within AMB_RS20980at 4556.705 kb on + strand, within AMB_RS20980at 4556.705 kb on + strand, within AMB_RS20980at 4556.706 kb on - strand, within AMB_RS20980at 4556.706 kb on - strand, within AMB_RS20980at 4556.706 kb on - strand, within AMB_RS20980at 4556.706 kb on - strand, within AMB_RS20980at 4556.706 kb on - strand, within AMB_RS20980at 4556.706 kb on - strand, within AMB_RS20980at 4556.706 kb on - strand, within AMB_RS20980at 4556.829 kb on - strand, within AMB_RS20980at 4556.829 kb on - strand, within AMB_RS20980at 4556.884 kb on + strand, within AMB_RS20980at 4556.885 kb on - strand, within AMB_RS20980at 4556.885 kb on - strand, within AMB_RS20980at 4556.885 kb on - strand, within AMB_RS20980at 4556.885 kb on - strand, within AMB_RS20980at 4556.996 kb on + strand, within AMB_RS20980at 4556.996 kb on + strand, within AMB_RS20980at 4556.996 kb on + strand, within AMB_RS20980at 4556.997 kb on - strand, within AMB_RS20980at 4556.997 kb on - strand, within AMB_RS20980at 4556.997 kb on - strand, within AMB_RS20980at 4556.997 kb on - strand, within AMB_RS20980at 4557.008 kb on + strand, within AMB_RS20980at 4557.008 kb on + strand, within AMB_RS20980at 4557.008 kb on + strand, within AMB_RS20980at 4557.015 kb on - strand, within AMB_RS20980at 4557.015 kb on - strand, within AMB_RS20980at 4557.015 kb on - strand, within AMB_RS20980at 4557.015 kb on - strand, within AMB_RS20980at 4557.234 kb on - strand, within AMB_RS20980at 4557.239 kb on + strand, within AMB_RS20980at 4557.239 kb on + strand, within AMB_RS20980at 4557.239 kb on + strand, within AMB_RS20980at 4557.239 kb on + strand, within AMB_RS20980at 4557.239 kb on + strand, within AMB_RS20980at 4557.240 kb on - strand, within AMB_RS20980at 4557.281 kb on + strand, within AMB_RS20980at 4557.282 kb on - strand, within AMB_RS20980at 4557.290 kb on + strand, within AMB_RS20980at 4557.290 kb on + strand, within AMB_RS20980at 4557.290 kb on + strand, within AMB_RS20980at 4557.290 kb on + strand, within AMB_RS20980at 4557.290 kb on + strand, within AMB_RS20980at 4557.291 kb on - strand, within AMB_RS20980at 4557.293 kb on + strand, within AMB_RS20980at 4557.293 kb on + strand, within AMB_RS20980

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_1
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4,553,878 + AMB_RS20970 0.74 -2.2
4,553,923 + AMB_RS20970 0.75 -0.9
4,553,923 + AMB_RS20970 0.75 -2.3
4,553,923 + AMB_RS20970 0.75 +0.3
4,553,923 + AMB_RS20970 0.75 +0.2
4,553,923 + AMB_RS20970 0.75 -1.9
4,553,923 + AMB_RS20970 0.75 +2.8
4,553,923 + AMB_RS20970 0.75 -2.9
4,553,923 + AMB_RS20970 0.75 -0.6
4,553,923 + AMB_RS20970 0.75 +0.1
4,553,923 + AMB_RS20970 0.75 -1.1
4,553,923 + AMB_RS20970 0.75 -0.3
4,553,923 + AMB_RS20970 0.75 +1.1
4,553,924 - AMB_RS20970 0.75 -0.8
4,553,924 - AMB_RS20970 0.75 -2.4
4,553,924 - AMB_RS20970 0.75 -1.9
4,553,924 - AMB_RS20970 0.75 +0.1
4,553,924 - AMB_RS20970 0.75 +0.7
4,554,295 + AMB_RS20970 0.85 +2.0
4,554,295 + AMB_RS20970 0.85 +1.7
4,554,296 - AMB_RS20970 0.85 -4.8
4,554,715 + -1.1
4,554,715 + -3.2
4,554,715 + +0.1
4,554,715 + -1.9
4,554,715 + -1.3
4,554,716 - -3.4
4,554,716 - -1.3
4,554,716 - -0.4
4,554,763 + -2.5
4,554,764 - -0.2
4,554,764 - -2.0
4,554,764 - -1.1
4,555,245 + AMB_RS20975 0.25 -0.9
4,555,246 - AMB_RS20975 0.25 +0.1
4,555,249 + AMB_RS20975 0.25 +0.7
4,555,249 + AMB_RS20975 0.25 +0.3
4,555,249 + AMB_RS20975 0.25 -0.9
4,555,249 + AMB_RS20975 0.25 -0.5
4,555,249 + AMB_RS20975 0.25 -1.0
4,555,250 - AMB_RS20975 0.25 -0.9
4,555,250 - AMB_RS20975 0.25 +0.1
4,555,395 + AMB_RS20975 0.34 -0.3
4,555,396 - AMB_RS20975 0.34 -1.2
4,555,396 - AMB_RS20975 0.34 -0.9
4,555,569 + AMB_RS20975 0.45 +0.6
4,555,570 - AMB_RS20975 0.45 +0.7
4,555,570 - AMB_RS20975 0.45 -0.3
4,555,570 - AMB_RS20975 0.45 -1.1
4,555,926 + AMB_RS20975 0.68 +0.1
4,555,927 - AMB_RS20975 0.68 -3.1
4,555,965 + AMB_RS20975 0.71 -0.0
4,555,966 - AMB_RS20975 0.71 -0.6
4,555,966 - AMB_RS20975 0.71 +0.3
4,556,227 + AMB_RS20975 0.87 +0.7
4,556,227 + AMB_RS20975 0.87 -4.3
4,556,227 + AMB_RS20975 0.87 +1.8
4,556,227 + AMB_RS20975 0.87 -0.5
4,556,227 + AMB_RS20975 0.87 +0.0
4,556,227 + AMB_RS20975 0.87 -3.6
4,556,228 - AMB_RS20975 0.88 -0.3
4,556,228 - AMB_RS20975 0.88 +0.7
4,556,228 - AMB_RS20975 0.88 -1.4
4,556,480 + +0.7
4,556,480 + +0.1
4,556,480 + -1.0
4,556,481 - -0.0
4,556,481 - -0.5
4,556,498 + -0.3
4,556,498 + -2.1
4,556,498 + -0.4
4,556,705 + AMB_RS20980 0.23 -2.1
4,556,705 + AMB_RS20980 0.23 -1.1
4,556,705 + AMB_RS20980 0.23 -0.3
4,556,705 + AMB_RS20980 0.23 +0.1
4,556,705 + AMB_RS20980 0.23 +0.1
4,556,705 + AMB_RS20980 0.23 -0.3
4,556,706 - AMB_RS20980 0.23 -1.4
4,556,706 - AMB_RS20980 0.23 -2.3
4,556,706 - AMB_RS20980 0.23 -1.3
4,556,706 - AMB_RS20980 0.23 -1.3
4,556,706 - AMB_RS20980 0.23 -0.9
4,556,706 - AMB_RS20980 0.23 -0.6
4,556,706 - AMB_RS20980 0.23 -0.9
4,556,829 - AMB_RS20980 0.36 +0.1
4,556,829 - AMB_RS20980 0.36 -2.1
4,556,884 + AMB_RS20980 0.42 -0.3
4,556,885 - AMB_RS20980 0.42 -1.4
4,556,885 - AMB_RS20980 0.42 -0.3
4,556,885 - AMB_RS20980 0.42 -0.9
4,556,885 - AMB_RS20980 0.42 -1.3
4,556,996 + AMB_RS20980 0.54 -0.3
4,556,996 + AMB_RS20980 0.54 +1.7
4,556,996 + AMB_RS20980 0.54 -0.6
4,556,997 - AMB_RS20980 0.54 -0.5
4,556,997 - AMB_RS20980 0.54 -2.3
4,556,997 - AMB_RS20980 0.54 -2.0
4,556,997 - AMB_RS20980 0.54 +0.9
4,557,008 + AMB_RS20980 0.55 -0.6
4,557,008 + AMB_RS20980 0.55 +0.7
4,557,008 + AMB_RS20980 0.55 -1.9
4,557,015 - AMB_RS20980 0.56 -0.6
4,557,015 - AMB_RS20980 0.56 -1.2
4,557,015 - AMB_RS20980 0.56 -0.3
4,557,015 - AMB_RS20980 0.56 -0.5
4,557,234 - AMB_RS20980 0.80 -0.6
4,557,239 + AMB_RS20980 0.80 +1.7
4,557,239 + AMB_RS20980 0.80 +1.7
4,557,239 + AMB_RS20980 0.80 -2.0
4,557,239 + AMB_RS20980 0.80 -0.1
4,557,239 + AMB_RS20980 0.80 -2.8
4,557,240 - AMB_RS20980 0.80 -1.5
4,557,281 + AMB_RS20980 0.85 -0.6
4,557,282 - AMB_RS20980 0.85 +1.7
4,557,290 + AMB_RS20980 0.86 -2.9
4,557,290 + AMB_RS20980 0.86 +0.3
4,557,290 + AMB_RS20980 0.86 +0.5
4,557,290 + AMB_RS20980 0.86 -0.3
4,557,290 + AMB_RS20980 0.86 -0.3
4,557,291 - AMB_RS20980 0.86 -0.9
4,557,293 + AMB_RS20980 0.86 -0.3
4,557,293 + AMB_RS20980 0.86 -0.6

Or see this region's nucleotide sequence