Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS20455 and AMB_RS20460 are separated by 10 nucleotides AMB_RS20460 and AMB_RS20465 are separated by 180 nucleotides AMB_RS20465 and AMB_RS20470 overlap by 4 nucleotides AMB_RS20470 and AMB_RS23635 are separated by 2 nucleotides
AMB_RS20455: AMB_RS20455 - hypothetical protein, at 4,446,932 to 4,447,192
_RS20455
AMB_RS20460: AMB_RS20460 - hypothetical protein, at 4,447,203 to 4,447,469
_RS20460
AMB_RS20465: AMB_RS20465 - hypothetical protein, at 4,447,650 to 4,448,309
_RS20465
AMB_RS20470: AMB_RS20470 - hypothetical protein, at 4,448,306 to 4,449,235
_RS20470
AMB_RS23635: AMB_RS23635 - hypothetical protein, at 4,449,238 to 4,449,720
_RS23635
Position (kb) 4447
4448
4449 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 4446.817 kb on + strand at 4446.817 kb on + strand at 4446.818 kb on - strand at 4446.818 kb on - strand at 4446.818 kb on - strand at 4446.818 kb on - strand at 4446.818 kb on - strand at 4446.890 kb on + strand at 4446.950 kb on + strand at 4446.950 kb on + strand at 4446.950 kb on + strand at 4446.950 kb on + strand at 4446.951 kb on - strand at 4446.951 kb on - strand at 4446.951 kb on - strand at 4446.951 kb on - strand at 4446.951 kb on - strand at 4446.951 kb on - strand at 4447.022 kb on + strand, within AMB_RS20455 at 4447.022 kb on + strand, within AMB_RS20455 at 4447.022 kb on + strand, within AMB_RS20455 at 4447.022 kb on + strand, within AMB_RS20455 at 4447.022 kb on + strand, within AMB_RS20455 at 4447.022 kb on + strand, within AMB_RS20455 at 4447.022 kb on + strand, within AMB_RS20455 at 4447.023 kb on - strand, within AMB_RS20455 at 4447.023 kb on - strand, within AMB_RS20455 at 4447.023 kb on - strand, within AMB_RS20455 at 4447.023 kb on - strand, within AMB_RS20455 at 4447.023 kb on - strand, within AMB_RS20455 at 4447.023 kb on - strand, within AMB_RS20455 at 4447.023 kb on - strand, within AMB_RS20455 at 4447.037 kb on + strand, within AMB_RS20455 at 4447.037 kb on + strand, within AMB_RS20455 at 4447.037 kb on + strand, within AMB_RS20455 at 4447.038 kb on - strand, within AMB_RS20455 at 4447.038 kb on - strand, within AMB_RS20455 at 4447.062 kb on + strand, within AMB_RS20455 at 4447.062 kb on + strand, within AMB_RS20455 at 4447.240 kb on + strand, within AMB_RS20460 at 4447.240 kb on + strand, within AMB_RS20460 at 4447.240 kb on + strand, within AMB_RS20460 at 4447.240 kb on + strand, within AMB_RS20460 at 4447.240 kb on + strand, within AMB_RS20460 at 4447.241 kb on - strand, within AMB_RS20460 at 4447.241 kb on - strand, within AMB_RS20460 at 4447.241 kb on - strand, within AMB_RS20460 at 4447.241 kb on - strand, within AMB_RS20460 at 4447.496 kb on - strand at 4447.557 kb on + strand at 4447.558 kb on - strand at 4447.558 kb on - strand at 4447.704 kb on + strand at 4447.705 kb on - strand at 4447.776 kb on + strand, within AMB_RS20465 at 4447.776 kb on + strand, within AMB_RS20465 at 4447.777 kb on - strand, within AMB_RS20465 at 4447.777 kb on - strand, within AMB_RS20465 at 4447.777 kb on - strand, within AMB_RS20465 at 4447.777 kb on - strand, within AMB_RS20465 at 4447.976 kb on + strand, within AMB_RS20465 at 4447.976 kb on + strand, within AMB_RS20465 at 4447.976 kb on + strand, within AMB_RS20465 at 4447.976 kb on + strand, within AMB_RS20465 at 4447.976 kb on + strand, within AMB_RS20465 at 4447.977 kb on - strand, within AMB_RS20465 at 4447.977 kb on - strand, within AMB_RS20465 at 4448.001 kb on + strand, within AMB_RS20465 at 4448.001 kb on + strand, within AMB_RS20465 at 4448.001 kb on + strand, within AMB_RS20465 at 4448.001 kb on + strand, within AMB_RS20465 at 4448.001 kb on + strand, within AMB_RS20465 at 4448.001 kb on + strand, within AMB_RS20465 at 4448.001 kb on + strand, within AMB_RS20465 at 4448.002 kb on - strand, within AMB_RS20465 at 4448.002 kb on - strand, within AMB_RS20465 at 4448.002 kb on - strand, within AMB_RS20465 at 4448.002 kb on - strand, within AMB_RS20465 at 4448.002 kb on - strand, within AMB_RS20465 at 4448.002 kb on - strand, within AMB_RS20465 at 4448.002 kb on - strand, within AMB_RS20465 at 4448.002 kb on - strand, within AMB_RS20465 at 4448.136 kb on + strand, within AMB_RS20465 at 4448.136 kb on + strand, within AMB_RS20465 at 4448.136 kb on + strand, within AMB_RS20465 at 4448.136 kb on + strand, within AMB_RS20465 at 4448.137 kb on - strand, within AMB_RS20465 at 4448.137 kb on - strand, within AMB_RS20465 at 4448.137 kb on - strand, within AMB_RS20465 at 4448.137 kb on - strand, within AMB_RS20465 at 4448.137 kb on - strand, within AMB_RS20465 at 4448.137 kb on - strand, within AMB_RS20465 at 4448.137 kb on - strand, within AMB_RS20465 at 4448.137 kb on - strand, within AMB_RS20465 at 4448.301 kb on + strand at 4448.301 kb on + strand at 4448.302 kb on - strand at 4448.302 kb on - strand at 4448.302 kb on - strand at 4448.302 kb on - strand at 4448.611 kb on + strand, within AMB_RS20470 at 4448.639 kb on + strand, within AMB_RS20470 at 4448.639 kb on + strand, within AMB_RS20470 at 4448.639 kb on + strand, within AMB_RS20470 at 4448.639 kb on + strand, within AMB_RS20470 at 4448.640 kb on - strand, within AMB_RS20470 at 4448.640 kb on - strand, within AMB_RS20470 at 4449.008 kb on + strand, within AMB_RS20470 at 4449.008 kb on + strand, within AMB_RS20470 at 4449.009 kb on - strand, within AMB_RS20470 at 4449.009 kb on - strand, within AMB_RS20470 at 4449.009 kb on - strand, within AMB_RS20470 at 4449.041 kb on + strand, within AMB_RS20470 at 4449.041 kb on + strand, within AMB_RS20470 at 4449.042 kb on - strand, within AMB_RS20470 at 4449.042 kb on - strand, within AMB_RS20470 at 4449.042 kb on - strand, within AMB_RS20470 at 4449.042 kb on - strand, within AMB_RS20470 at 4449.062 kb on + strand, within AMB_RS20470 at 4449.062 kb on + strand, within AMB_RS20470 at 4449.063 kb on - strand, within AMB_RS20470 at 4449.063 kb on - strand, within AMB_RS20470
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 4,446,817 + +0.7 4,446,817 + -0.0 4,446,818 - -0.6 4,446,818 - +0.7 4,446,818 - -0.1 4,446,818 - -0.6 4,446,818 - +0.1 4,446,890 + -1.1 4,446,950 + -4.2 4,446,950 + -0.1 4,446,950 + -0.9 4,446,950 + -1.1 4,446,951 - -1.5 4,446,951 - +1.7 4,446,951 - +1.7 4,446,951 - +0.1 4,446,951 - -0.6 4,446,951 - -1.1 4,447,022 + AMB_RS20455 0.34 -1.3 4,447,022 + AMB_RS20455 0.34 -1.7 4,447,022 + AMB_RS20455 0.34 +0.3 4,447,022 + AMB_RS20455 0.34 -0.1 4,447,022 + AMB_RS20455 0.34 +1.7 4,447,022 + AMB_RS20455 0.34 -1.0 4,447,022 + AMB_RS20455 0.34 -1.1 4,447,023 - AMB_RS20455 0.35 +2.2 4,447,023 - AMB_RS20455 0.35 -0.7 4,447,023 - AMB_RS20455 0.35 +1.1 4,447,023 - AMB_RS20455 0.35 +1.2 4,447,023 - AMB_RS20455 0.35 -2.0 4,447,023 - AMB_RS20455 0.35 -1.7 4,447,023 - AMB_RS20455 0.35 -1.3 4,447,037 + AMB_RS20455 0.40 -3.9 4,447,037 + AMB_RS20455 0.40 +0.1 4,447,037 + AMB_RS20455 0.40 -0.6 4,447,038 - AMB_RS20455 0.41 +0.1 4,447,038 - AMB_RS20455 0.41 -1.5 4,447,062 + AMB_RS20455 0.50 -4.2 4,447,062 + AMB_RS20455 0.50 +0.1 4,447,240 + AMB_RS20460 0.14 +0.5 4,447,240 + AMB_RS20460 0.14 +1.2 4,447,240 + AMB_RS20460 0.14 -1.1 4,447,240 + AMB_RS20460 0.14 -0.3 4,447,240 + AMB_RS20460 0.14 -2.7 4,447,241 - AMB_RS20460 0.14 +0.8 4,447,241 - AMB_RS20460 0.14 -2.8 4,447,241 - AMB_RS20460 0.14 +0.6 4,447,241 - AMB_RS20460 0.14 -2.7 4,447,496 - -2.1 4,447,557 + +1.7 4,447,558 - +0.7 4,447,558 - -0.7 4,447,704 + -0.6 4,447,705 - -0.3 4,447,776 + AMB_RS20465 0.19 -1.5 4,447,776 + AMB_RS20465 0.19 +0.7 4,447,777 - AMB_RS20465 0.19 -1.3 4,447,777 - AMB_RS20465 0.19 -0.3 4,447,777 - AMB_RS20465 0.19 +1.6 4,447,777 - AMB_RS20465 0.19 +0.1 4,447,976 + AMB_RS20465 0.49 -1.5 4,447,976 + AMB_RS20465 0.49 -0.3 4,447,976 + AMB_RS20465 0.49 -0.2 4,447,976 + AMB_RS20465 0.49 +1.4 4,447,976 + AMB_RS20465 0.49 -0.3 4,447,977 - AMB_RS20465 0.50 -2.6 4,447,977 - AMB_RS20465 0.50 -0.9 4,448,001 + AMB_RS20465 0.53 -0.7 4,448,001 + AMB_RS20465 0.53 -0.6 4,448,001 + AMB_RS20465 0.53 -1.2 4,448,001 + AMB_RS20465 0.53 -0.5 4,448,001 + AMB_RS20465 0.53 -1.3 4,448,001 + AMB_RS20465 0.53 -1.0 4,448,001 + AMB_RS20465 0.53 -0.8 4,448,002 - AMB_RS20465 0.53 -0.9 4,448,002 - AMB_RS20465 0.53 -0.2 4,448,002 - AMB_RS20465 0.53 -0.1 4,448,002 - AMB_RS20465 0.53 +0.7 4,448,002 - AMB_RS20465 0.53 -0.3 4,448,002 - AMB_RS20465 0.53 -0.1 4,448,002 - AMB_RS20465 0.53 -2.7 4,448,002 - AMB_RS20465 0.53 +0.9 4,448,136 + AMB_RS20465 0.74 -3.5 4,448,136 + AMB_RS20465 0.74 +0.1 4,448,136 + AMB_RS20465 0.74 -1.4 4,448,136 + AMB_RS20465 0.74 -1.4 4,448,137 - AMB_RS20465 0.74 -4.7 4,448,137 - AMB_RS20465 0.74 +0.5 4,448,137 - AMB_RS20465 0.74 -2.5 4,448,137 - AMB_RS20465 0.74 -1.5 4,448,137 - AMB_RS20465 0.74 -0.3 4,448,137 - AMB_RS20465 0.74 -0.6 4,448,137 - AMB_RS20465 0.74 +0.1 4,448,137 - AMB_RS20465 0.74 +0.1 4,448,301 + -3.8 4,448,301 + -2.7 4,448,302 - -2.5 4,448,302 - -1.1 4,448,302 - +0.3 4,448,302 - +0.7 4,448,611 + AMB_RS20470 0.33 -0.8 4,448,639 + AMB_RS20470 0.36 +0.1 4,448,639 + AMB_RS20470 0.36 -3.7 4,448,639 + AMB_RS20470 0.36 -0.3 4,448,639 + AMB_RS20470 0.36 +0.1 4,448,640 - AMB_RS20470 0.36 -0.6 4,448,640 - AMB_RS20470 0.36 -0.6 4,449,008 + AMB_RS20470 0.75 -1.7 4,449,008 + AMB_RS20470 0.75 -1.1 4,449,009 - AMB_RS20470 0.76 -0.3 4,449,009 - AMB_RS20470 0.76 -0.9 4,449,009 - AMB_RS20470 0.76 -1.7 4,449,041 + AMB_RS20470 0.79 +1.7 4,449,041 + AMB_RS20470 0.79 -0.9 4,449,042 - AMB_RS20470 0.79 -2.8 4,449,042 - AMB_RS20470 0.79 -3.3 4,449,042 - AMB_RS20470 0.79 -2.0 4,449,042 - AMB_RS20470 0.79 +0.6 4,449,062 + AMB_RS20470 0.81 +1.6 4,449,062 + AMB_RS20470 0.81 -0.3 4,449,063 - AMB_RS20470 0.81 -4.8 4,449,063 - AMB_RS20470 0.81 -0.6
Or see this region's nucleotide sequence