Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16665

Experiment: 30_an_nonmag_1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_nonmag_1
3,580,138	-				-0.2
3,580,211	+				-0.5
3,580,211	+				+0.0
3,580,211	+				-1.9
3,580,211	+				-0.0
3,580,212	-				+1.5
3,580,212	-				+0.5
3,580,212	-				-0.5
3,580,212	-				-1.0
3,580,212	-				-4.4
3,580,212	-				+0.5
3,580,249	+				+0.6
3,580,250	-				-0.5
3,580,250	-				-1.3
3,580,250	-				-0.5
3,580,519	+				-0.7
3,580,519	+				-1.6
3,580,519	+				-1.5
3,580,519	+				-0.3
3,580,519	+				-1.5
3,580,519	+				-3.0
3,580,519	+				-0.5
3,580,519	+				-0.1
3,580,519	+				-2.7
3,580,519	+				+1.5
3,580,520	-				-2.0
3,580,520	-				-1.5
3,580,520	-				+0.2
3,580,520	-				-0.5
3,580,607	-				-1.6
3,580,607	-				+1.5
3,580,607	-				-0.0
3,580,839	+				-0.0
3,580,840	-				+0.5
3,580,840	-				-0.4
3,581,028	-				-1.0
3,581,070	+				-4.6
3,581,070	+				-0.0
3,581,070	+				-0.4
3,581,070	+				-1.0
3,581,070	+				-0.2
3,581,070	+				-0.6
3,581,070	+				-1.0
3,581,070	+				-0.6
3,581,070	+				+1.0
3,581,070	+				-1.5
3,581,070	+				+5.0
3,581,070	+				-0.5
3,581,132	+				-2.0
3,581,132	+				+0.5
3,581,132	+				-0.3
3,581,132	+				-2.6
3,581,272	+		AMB_RS16665	0.16	-1.7
3,581,272	+		AMB_RS16665	0.16	-1.9
3,581,272	+		AMB_RS16665	0.16	-2.4
3,581,272	+		AMB_RS16665	0.16	-0.5
3,581,272	+		AMB_RS16665	0.16	-0.5
3,581,272	+		AMB_RS16665	0.16	+5.1
3,581,272	+		AMB_RS16665	0.16	+0.6
3,581,272	+		AMB_RS16665	0.16	-0.0
3,581,273	-		AMB_RS16665	0.16	-1.0
3,581,295	+		AMB_RS16665	0.18	+1.5
3,581,295	+		AMB_RS16665	0.18	+1.4
3,581,296	-		AMB_RS16665	0.18	+0.5
3,581,391	+		AMB_RS16665	0.27	-0.8
3,581,391	+		AMB_RS16665	0.27	-0.0
3,581,392	-		AMB_RS16665	0.27	-0.0
3,581,401	+		AMB_RS16665	0.27	-3.2
3,581,402	-		AMB_RS16665	0.28	+1.5
3,581,402	-		AMB_RS16665	0.28	-0.5
3,581,402	-		AMB_RS16665	0.28	+0.1
3,581,428	+		AMB_RS16665	0.30	-0.1
3,581,429	-		AMB_RS16665	0.30	-2.2
3,581,518	+		AMB_RS16665	0.38	-0.5
3,581,527	-		AMB_RS16665	0.39	-0.8
3,581,576	+		AMB_RS16665	0.44	+0.2
3,581,576	+		AMB_RS16665	0.44	+0.5
3,581,576	+		AMB_RS16665	0.44	+0.2
3,581,576	+		AMB_RS16665	0.44	+2.1
3,581,576	+		AMB_RS16665	0.44	+0.4
3,581,576	+		AMB_RS16665	0.44	-2.2
3,581,576	+		AMB_RS16665	0.44	-4.4
3,581,577	-		AMB_RS16665	0.44	+0.1
3,581,577	-		AMB_RS16665	0.44	-2.8
3,581,577	-		AMB_RS16665	0.44	-3.2
3,581,620	+		AMB_RS16665	0.48	-0.5
3,581,620	+		AMB_RS16665	0.48	-0.5
3,581,621	-		AMB_RS16665	0.48	+0.1
3,581,621	-		AMB_RS16665	0.48	+0.4
3,581,621	-		AMB_RS16665	0.48	-1.0
3,581,621	-		AMB_RS16665	0.48	-2.3
3,581,621	-		AMB_RS16665	0.48	-2.4
3,581,621	-		AMB_RS16665	0.48	+0.1
3,581,621	-		AMB_RS16665	0.48	-1.7
3,581,621	-		AMB_RS16665	0.48	-1.6
3,581,677	+		AMB_RS16665	0.53	-0.0
3,581,677	+		AMB_RS16665	0.53	-0.8
3,581,678	-		AMB_RS16665	0.53	-0.8
3,581,678	-		AMB_RS16665	0.53	-0.6
3,581,678	-		AMB_RS16665	0.53	-1.0
3,581,678	-		AMB_RS16665	0.53	+0.7
3,581,678	-		AMB_RS16665	0.53	+0.1
3,581,678	-		AMB_RS16665	0.53	-0.3
3,581,678	-		AMB_RS16665	0.53	-1.3
3,581,678	-		AMB_RS16665	0.53	+0.7
3,581,757	-		AMB_RS16665	0.60	-0.7
3,581,757	-		AMB_RS16665	0.60	-3.2
3,581,757	-		AMB_RS16665	0.60	+0.0
3,581,763	+		AMB_RS16665	0.61	-1.5
3,581,763	+		AMB_RS16665	0.61	+0.2
3,581,836	+		AMB_RS16665	0.67	-2.6
3,581,837	-		AMB_RS16665	0.68	-2.9
3,581,918	+		AMB_RS16665	0.75	-0.5
3,581,983	+		AMB_RS16665	0.81	-1.0
3,581,983	+		AMB_RS16665	0.81	-1.5
3,581,984	-		AMB_RS16665	0.81	-0.8
3,581,984	-		AMB_RS16665	0.81	-1.0
3,581,984	-		AMB_RS16665	0.81	+0.2
3,582,006	+		AMB_RS16665	0.83	-1.8
3,582,007	-		AMB_RS16665	0.83	-1.3
3,582,012	+		AMB_RS16665	0.84	-3.8
3,582,013	-		AMB_RS16665	0.84	+1.3
3,582,198	-				-0.4
3,582,198	-				-0.8
3,582,298	+				-0.0
3,582,298	+				-0.6
3,582,298	+				-3.0
3,582,298	+				-0.8
3,582,298	+				-1.8
3,582,298	+				+1.2
3,582,298	+				+1.5
3,582,299	-				-0.8
3,582,299	-				-0.1
3,582,299	-				-2.1
3,582,299	-				-0.2
3,582,302	+				-0.8
3,582,302	+				-0.0
3,582,303	-				-2.6
3,582,303	-				-1.1
3,582,303	-				-2.9
3,582,303	-				+1.2
3,582,303	-				+1.5
3,582,303	-				-2.1
3,582,303	-				+0.9
3,582,303	-				-1.5
3,582,370	+				+1.5
3,582,370	+				-1.6
3,582,370	+				-5.5
3,582,370	+				-0.8
3,582,370	+				+1.0
3,582,370	+				-0.1
3,582,371	-				-1.1
3,582,371	-				-0.2
3,582,371	-				-2.4
3,582,371	-				-0.1
3,582,371	-				+0.5
3,582,371	-				-0.4
3,582,371	-				+0.5
3,582,371	-				-1.9
3,582,371	-				+0.2
3,582,371	-				+0.5
3,582,371	-				+0.5
3,582,478	+		AMB_RS16670	0.17	-1.5
3,582,478	+		AMB_RS16670	0.17	-0.9
3,582,478	+		AMB_RS16670	0.17	-3.7
3,582,478	+		AMB_RS16670	0.17	-0.8
3,582,479	-		AMB_RS16670	0.17	-1.8
3,582,479	-		AMB_RS16670	0.17	-1.8
3,582,479	-		AMB_RS16670	0.17	+0.4
3,582,479	-		AMB_RS16670	0.17	-0.5
3,582,479	-		AMB_RS16670	0.17	-1.8
3,582,479	-		AMB_RS16670	0.17	-1.3
3,582,714	+		AMB_RS16670	0.34	-4.7
3,582,714	+		AMB_RS16670	0.34	+0.5
3,582,715	-		AMB_RS16670	0.34	-2.0
3,582,782	+		AMB_RS16670	0.39	-0.3
3,582,783	-		AMB_RS16670	0.39	-1.6
3,582,839	+		AMB_RS16670	0.43	-4.6
3,582,839	+		AMB_RS16670	0.43	+0.5
3,582,840	-		AMB_RS16670	0.43	-0.8
3,582,840	-		AMB_RS16670	0.43	-1.8
3,582,840	-		AMB_RS16670	0.43	-2.4
3,583,043	+		AMB_RS16670	0.57	-1.2