Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16460

Experiment: 30_an_nonmag_1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_nonmag_1
3,521,510	-		AMB_RS16450	0.85	-0.3
3,521,527	+		AMB_RS16450	0.86	-0.5
3,521,527	+		AMB_RS16450	0.86	+0.5
3,521,527	+		AMB_RS16450	0.86	-0.8
3,521,527	+		AMB_RS16450	0.86	-2.5
3,521,528	-		AMB_RS16450	0.86	-3.2
3,521,528	-		AMB_RS16450	0.86	-1.5
3,521,528	-		AMB_RS16450	0.86	-0.7
3,521,528	-		AMB_RS16450	0.86	-3.6
3,521,590	+				-0.5
3,521,605	-				-0.8
3,521,704	+				-2.7
3,521,704	+				+0.5
3,521,705	-				-0.5
3,521,705	-				-1.3
3,521,705	-				-0.5
3,521,705	-				+0.6
3,521,988	+		AMB_RS16455	0.58	-1.6
3,522,044	-		AMB_RS16455	0.72	-0.0
3,522,102	+		AMB_RS16455	0.86	-2.2
3,522,103	-		AMB_RS16455	0.86	-4.3
3,522,103	-		AMB_RS16455	0.86	-1.5
3,522,141	-				-0.5
3,522,149	+				+0.2
3,522,151	+				-1.0
3,522,260	-				-2.2
3,522,260	-				-2.0
3,522,260	-				-3.0
3,522,266	+				-1.6
3,522,266	+				+0.0
3,522,266	+				-0.8
3,522,267	-				+0.3
3,522,294	-				-4.2
3,522,294	-				-0.7
3,522,304	+				+0.3
3,522,338	+				-2.4
3,522,339	-				+1.5
3,522,339	-				-2.0
3,522,339	-				-1.5
3,522,339	-				-3.3
3,522,339	-				-1.8
3,522,525	+		AMB_RS16460	0.11	+1.5
3,522,525	+		AMB_RS16460	0.11	+0.0
3,522,525	+		AMB_RS16460	0.11	+0.4
3,522,525	+		AMB_RS16460	0.11	-1.4
3,522,525	+		AMB_RS16460	0.11	-0.5
3,522,526	-		AMB_RS16460	0.12	-1.6
3,522,526	-		AMB_RS16460	0.12	-0.5
3,522,526	-		AMB_RS16460	0.12	-2.1
3,522,927	+		AMB_RS16460	0.29	+0.5
3,522,927	+		AMB_RS16460	0.29	-0.0
3,522,929	+		AMB_RS16460	0.29	+1.7
3,522,930	-		AMB_RS16460	0.29	-0.0
3,522,954	+		AMB_RS16460	0.30	+2.2
3,522,954	+		AMB_RS16460	0.30	-0.8
3,522,955	-		AMB_RS16460	0.31	+0.3
3,522,955	-		AMB_RS16460	0.31	-5.2
3,523,034	+		AMB_RS16460	0.34	-0.7
3,523,034	+		AMB_RS16460	0.34	-1.8
3,523,034	+		AMB_RS16460	0.34	-0.8
3,523,035	-		AMB_RS16460	0.34	+0.6
3,523,202	+		AMB_RS16460	0.41	-1.8
3,523,202	+		AMB_RS16460	0.41	-0.4
3,523,319	+		AMB_RS16460	0.47	-1.4
3,523,332	+		AMB_RS16460	0.47	-0.6
3,523,378	-		AMB_RS16460	0.49	+0.8
3,523,431	+		AMB_RS16460	0.52	-1.6
3,523,431	+		AMB_RS16460	0.52	-0.0
3,523,431	+		AMB_RS16460	0.52	-0.1
3,523,431	+		AMB_RS16460	0.52	-0.4
3,523,432	-		AMB_RS16460	0.52	-1.0
3,523,432	-		AMB_RS16460	0.52	+0.5
3,523,520	+		AMB_RS16460	0.55	-0.0
3,523,520	+		AMB_RS16460	0.55	-0.5
3,523,520	+		AMB_RS16460	0.55	-2.6
3,523,520	+		AMB_RS16460	0.55	-1.0
3,523,520	+		AMB_RS16460	0.55	+0.4
3,523,520	+		AMB_RS16460	0.55	-0.8
3,523,521	-		AMB_RS16460	0.56	+0.8
3,523,521	-		AMB_RS16460	0.56	+0.2
3,523,521	-		AMB_RS16460	0.56	-1.5
3,523,527	-		AMB_RS16460	0.56	-0.1
3,523,527	-		AMB_RS16460	0.56	-3.0
3,523,624	+		AMB_RS16460	0.60	+0.6
3,523,625	-		AMB_RS16460	0.60	-0.1
3,523,779	+		AMB_RS16460	0.67	-1.6
3,523,781	+		AMB_RS16460	0.67	+0.3
3,523,781	+		AMB_RS16460	0.67	+1.5
3,523,781	+		AMB_RS16460	0.67	+0.5
3,523,871	+		AMB_RS16460	0.71	-3.2
3,523,871	+		AMB_RS16460	0.71	+0.1
3,523,871	+		AMB_RS16460	0.71	-3.3
3,523,872	-		AMB_RS16460	0.71	-1.5
3,523,872	-		AMB_RS16460	0.71	-2.0
3,523,872	-		AMB_RS16460	0.71	-1.2
3,523,872	-		AMB_RS16460	0.71	+0.5
3,523,872	-		AMB_RS16460	0.71	-1.6
3,523,938	-		AMB_RS16460	0.74	-0.5
3,523,954	+		AMB_RS16460	0.75	-0.0
3,523,954	+		AMB_RS16460	0.75	+0.2
3,523,954	+		AMB_RS16460	0.75	-1.6
3,523,954	+		AMB_RS16460	0.75	-0.5
3,523,955	-		AMB_RS16460	0.75	-2.9
3,523,955	-		AMB_RS16460	0.75	-1.1
3,524,039	+		AMB_RS16460	0.78	-3.0
3,524,039	+		AMB_RS16460	0.78	+0.5
3,524,040	-		AMB_RS16460	0.78	-1.0
3,524,040	-		AMB_RS16460	0.78	-0.5
3,524,179	+		AMB_RS16460	0.85	-2.8
3,524,179	+		AMB_RS16460	0.85	-1.5
3,524,179	+		AMB_RS16460	0.85	-0.3
3,524,179	+		AMB_RS16460	0.85	-0.5
3,524,179	+		AMB_RS16460	0.85	-0.5
3,524,180	-		AMB_RS16460	0.85	+0.4
3,524,180	-		AMB_RS16460	0.85	-1.9
3,524,180	-		AMB_RS16460	0.85	-1.0
3,524,193	+		AMB_RS16460	0.85	-2.8
3,524,243	+		AMB_RS16460	0.87	-1.3
3,524,314	-				-1.8
3,524,323	+				-2.5
3,524,324	-				+0.5
3,524,438	+				+0.5
3,524,445	+				+0.2
3,524,446	-				-1.3
3,524,506	+				-3.8
3,524,507	-				+0.3
3,524,608	+				-0.4
3,524,608	+				-0.3
3,524,608	+				-3.3
3,524,608	+				+0.1
3,524,609	-				-3.6
3,524,609	-				-2.5
3,524,609	-				-2.5
3,524,609	-				-0.6
3,524,609	-				-2.4
3,524,609	-				+0.3
3,524,609	-				-0.1
3,524,609	-				-0.6
3,524,609	-				-4.5
3,524,609	-				+0.5
3,524,609	-				-0.8
3,524,609	-				-0.9
3,524,610	+				-2.8
3,524,610	+				-0.8
3,524,610	+				-1.3
3,524,610	+				-0.1
3,524,610	+				-2.0
3,524,610	+				-0.9
3,524,611	-				-4.4
3,524,611	-				-1.8
3,524,611	-				-0.6
3,524,611	-				-2.2
3,524,611	-				-1.1
3,524,635	+				-0.7
3,524,636	-				+0.5
3,524,636	-				+0.5
3,524,636	-				+0.5
3,524,690	+				-0.8
3,524,748	+				-1.0
3,524,874	-				-0.5
3,524,909	+				+0.4
3,524,966	+				-4.9
3,524,966	+				+1.0
3,525,047	+		AMB_RS16465	0.13	+0.5
3,525,047	+		AMB_RS16465	0.13	-0.6
3,525,078	+		AMB_RS16465	0.16	-2.2
3,525,079	-		AMB_RS16465	0.16	-1.0
3,525,121	+		AMB_RS16465	0.21	+0.6
3,525,122	-		AMB_RS16465	0.21	-2.3
3,525,122	-		AMB_RS16465	0.21	-1.8
3,525,122	-		AMB_RS16465	0.21	-1.0
3,525,170	+		AMB_RS16465	0.27	+0.9
3,525,170	+		AMB_RS16465	0.27	-3.5
3,525,171	-		AMB_RS16465	0.27	-1.0
3,525,179	+		AMB_RS16465	0.28	-0.5
3,525,180	-		AMB_RS16465	0.28	-2.2
3,525,180	-		AMB_RS16465	0.28	-0.8
3,525,263	-		AMB_RS16465	0.38	-0.2
3,525,284	+		AMB_RS16465	0.40	-1.0
3,525,284	+		AMB_RS16465	0.40	+1.5
3,525,285	-		AMB_RS16465	0.40	-0.5
3,525,378	-		AMB_RS16465	0.51	-1.0
3,525,407	+		AMB_RS16465	0.55	-2.6
3,525,407	+		AMB_RS16465	0.55	-2.2
3,525,407	+		AMB_RS16465	0.55	-0.0
3,525,408	-		AMB_RS16465	0.55	-1.0
3,525,408	-		AMB_RS16465	0.55	-0.5
3,525,408	-		AMB_RS16465	0.55	-2.4
3,525,425	-		AMB_RS16465	0.57	-0.8