Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS09275

Experiment: 30_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS09260 and AMB_RS09265 are separated by 4 nucleotidesAMB_RS09265 and AMB_RS09270 are separated by 11 nucleotidesAMB_RS09270 and AMB_RS09275 are separated by 10 nucleotidesAMB_RS09275 and AMB_RS09280 are separated by 47 nucleotidesAMB_RS09280 and AMB_RS09285 are separated by 185 nucleotides AMB_RS09260: AMB_RS09260 - arsenical-resistance protein, at 1,969,012 to 1,970,070 _RS09260 AMB_RS09265: AMB_RS09265 - arsenate reductase (glutaredoxin), at 1,970,075 to 1,970,503 _RS09265 AMB_RS09270: AMB_RS09270 - arsenical resistance operon transcriptional repressor ArsD, at 1,970,515 to 1,970,886 _RS09270 AMB_RS09275: AMB_RS09275 - arsenical pump-driving ATPase, at 1,970,897 to 1,972,603 _RS09275 AMB_RS09280: AMB_RS09280 - ArsR family transcriptional regulator, at 1,972,651 to 1,972,950 _RS09280 AMB_RS09285: AMB_RS09285 - RNA polymerase sigma factor, at 1,973,136 to 1,973,669 _RS09285 Position (kb) 1970 1971 1972 1973Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1970.053 kb on + strandat 1970.096 kb on + strandat 1970.096 kb on + strandat 1970.096 kb on + strandat 1970.096 kb on + strandat 1970.097 kb on - strandat 1970.097 kb on - strandat 1970.097 kb on - strandat 1970.177 kb on + strand, within AMB_RS09265at 1970.177 kb on + strand, within AMB_RS09265at 1970.177 kb on + strand, within AMB_RS09265at 1970.178 kb on - strand, within AMB_RS09265at 1970.274 kb on - strand, within AMB_RS09265at 1970.502 kb on - strandat 1970.533 kb on + strandat 1970.533 kb on + strandat 1970.533 kb on + strandat 1970.534 kb on - strandat 1970.650 kb on + strand, within AMB_RS09270at 1970.650 kb on + strand, within AMB_RS09270at 1970.754 kb on + strand, within AMB_RS09270at 1970.754 kb on + strand, within AMB_RS09270at 1970.754 kb on + strand, within AMB_RS09270at 1970.755 kb on - strand, within AMB_RS09270at 1970.774 kb on - strand, within AMB_RS09270at 1970.774 kb on - strand, within AMB_RS09270at 1970.774 kb on - strand, within AMB_RS09270at 1970.774 kb on - strand, within AMB_RS09270at 1970.774 kb on - strand, within AMB_RS09270at 1970.774 kb on - strand, within AMB_RS09270at 1971.340 kb on + strand, within AMB_RS09275at 1971.340 kb on + strand, within AMB_RS09275at 1971.341 kb on - strand, within AMB_RS09275at 1971.452 kb on + strand, within AMB_RS09275at 1971.452 kb on + strand, within AMB_RS09275at 1971.452 kb on + strand, within AMB_RS09275at 1971.453 kb on - strand, within AMB_RS09275at 1971.453 kb on - strand, within AMB_RS09275at 1972.250 kb on - strand, within AMB_RS09275at 1972.250 kb on - strand, within AMB_RS09275at 1972.250 kb on - strand, within AMB_RS09275at 1972.250 kb on - strand, within AMB_RS09275at 1972.280 kb on + strand, within AMB_RS09275at 1972.280 kb on + strand, within AMB_RS09275at 1972.281 kb on - strand, within AMB_RS09275at 1972.281 kb on - strand, within AMB_RS09275at 1972.529 kb on + strandat 1972.529 kb on + strandat 1972.529 kb on + strandat 1972.529 kb on + strandat 1972.529 kb on + strandat 1972.650 kb on + strandat 1972.867 kb on + strand, within AMB_RS09280at 1972.867 kb on + strand, within AMB_RS09280at 1972.867 kb on + strand, within AMB_RS09280at 1972.867 kb on + strand, within AMB_RS09280at 1972.868 kb on - strand, within AMB_RS09280at 1972.907 kb on - strand, within AMB_RS09280at 1973.043 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_1
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1,970,053 + -0.5
1,970,096 + -2.0
1,970,096 + -0.2
1,970,096 + -1.3
1,970,096 + -1.1
1,970,097 - -2.2
1,970,097 - -2.3
1,970,097 - -1.5
1,970,177 + AMB_RS09265 0.24 -1.3
1,970,177 + AMB_RS09265 0.24 -4.6
1,970,177 + AMB_RS09265 0.24 +1.4
1,970,178 - AMB_RS09265 0.24 -0.0
1,970,274 - AMB_RS09265 0.46 +0.1
1,970,502 - -0.5
1,970,533 + -1.9
1,970,533 + +0.1
1,970,533 + -2.8
1,970,534 - -0.5
1,970,650 + AMB_RS09270 0.36 -3.7
1,970,650 + AMB_RS09270 0.36 -0.8
1,970,754 + AMB_RS09270 0.64 -1.7
1,970,754 + AMB_RS09270 0.64 -1.1
1,970,754 + AMB_RS09270 0.64 -1.5
1,970,755 - AMB_RS09270 0.65 -0.1
1,970,774 - AMB_RS09270 0.70 -1.0
1,970,774 - AMB_RS09270 0.70 -0.1
1,970,774 - AMB_RS09270 0.70 -0.9
1,970,774 - AMB_RS09270 0.70 +0.8
1,970,774 - AMB_RS09270 0.70 -1.1
1,970,774 - AMB_RS09270 0.70 -0.5
1,971,340 + AMB_RS09275 0.26 +1.0
1,971,340 + AMB_RS09275 0.26 -3.1
1,971,341 - AMB_RS09275 0.26 -2.1
1,971,452 + AMB_RS09275 0.33 +1.3
1,971,452 + AMB_RS09275 0.33 +1.7
1,971,452 + AMB_RS09275 0.33 +1.3
1,971,453 - AMB_RS09275 0.33 -2.6
1,971,453 - AMB_RS09275 0.33 +1.5
1,972,250 - AMB_RS09275 0.79 +1.5
1,972,250 - AMB_RS09275 0.79 -0.1
1,972,250 - AMB_RS09275 0.79 -0.9
1,972,250 - AMB_RS09275 0.79 -1.1
1,972,280 + AMB_RS09275 0.81 -1.8
1,972,280 + AMB_RS09275 0.81 -0.9
1,972,281 - AMB_RS09275 0.81 -2.7
1,972,281 - AMB_RS09275 0.81 -0.1
1,972,529 + -0.1
1,972,529 + -0.1
1,972,529 + -0.1
1,972,529 + -0.5
1,972,529 + -0.5
1,972,650 + -1.2
1,972,867 + AMB_RS09280 0.72 -1.9
1,972,867 + AMB_RS09280 0.72 -0.2
1,972,867 + AMB_RS09280 0.72 -0.5
1,972,867 + AMB_RS09280 0.72 -0.3
1,972,868 - AMB_RS09280 0.72 +0.2
1,972,907 - AMB_RS09280 0.85 -2.0
1,973,043 - -3.7

Or see this region's nucleotide sequence