Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS09215 and AMB_RS09220 are separated by 26 nucleotides AMB_RS09220 and AMB_RS09225 are separated by 28 nucleotides AMB_RS09225 and AMB_RS09230 are separated by 49 nucleotides AMB_RS09230 and AMB_RS09235 are separated by 2 nucleotides
AMB_RS09215: AMB_RS09215 - CTP synthetase, at 1,960,519 to 1,962,144
_RS09215
AMB_RS09220: AMB_RS09220 - 3-deoxy-8-phosphooctulonate synthase, at 1,962,171 to 1,963,022
_RS09220
AMB_RS09225: AMB_RS09225 - enolase, at 1,963,051 to 1,964,328
_RS09225
AMB_RS09230: AMB_RS09230 - class I SAM-dependent methyltransferase, at 1,964,378 to 1,965,085
_RS09230
AMB_RS09235: AMB_RS09235 - hypothetical protein, at 1,965,088 to 1,965,948
_RS09235
Position (kb) 1963
1964
1965 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1962.158 kb on + strand at 1963.015 kb on + strand at 1964.581 kb on - strand, within AMB_RS09230 at 1964.581 kb on - strand, within AMB_RS09230 at 1964.581 kb on - strand, within AMB_RS09230 at 1964.641 kb on - strand, within AMB_RS09230 at 1964.641 kb on - strand, within AMB_RS09230 at 1964.646 kb on + strand, within AMB_RS09230 at 1964.661 kb on + strand, within AMB_RS09230 at 1964.661 kb on + strand, within AMB_RS09230 at 1964.661 kb on + strand, within AMB_RS09230 at 1964.661 kb on + strand, within AMB_RS09230 at 1964.661 kb on + strand, within AMB_RS09230 at 1964.661 kb on + strand, within AMB_RS09230 at 1964.662 kb on - strand, within AMB_RS09230 at 1964.662 kb on - strand, within AMB_RS09230 at 1964.662 kb on - strand, within AMB_RS09230 at 1964.664 kb on + strand, within AMB_RS09230 at 1964.664 kb on + strand, within AMB_RS09230 at 1964.664 kb on + strand, within AMB_RS09230 at 1964.665 kb on - strand, within AMB_RS09230 at 1965.007 kb on - strand, within AMB_RS09230 at 1965.123 kb on - strand at 1965.135 kb on - strand at 1965.147 kb on + strand at 1965.182 kb on + strand, within AMB_RS09235 at 1965.183 kb on - strand, within AMB_RS09235 at 1965.188 kb on + strand, within AMB_RS09235 at 1965.188 kb on + strand, within AMB_RS09235 at 1965.188 kb on + strand, within AMB_RS09235 at 1965.189 kb on - strand, within AMB_RS09235 at 1965.267 kb on + strand, within AMB_RS09235 at 1965.268 kb on - strand, within AMB_RS09235 at 1965.268 kb on - strand, within AMB_RS09235 at 1965.274 kb on + strand, within AMB_RS09235 at 1965.275 kb on - strand, within AMB_RS09235 at 1965.275 kb on - strand, within AMB_RS09235 at 1965.275 kb on - strand, within AMB_RS09235 at 1965.285 kb on + strand, within AMB_RS09235
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 1,962,158 + -0.9 1,963,015 + -2.7 1,964,581 - AMB_RS09230 0.29 -1.9 1,964,581 - AMB_RS09230 0.29 -1.3 1,964,581 - AMB_RS09230 0.29 -2.5 1,964,641 - AMB_RS09230 0.37 -3.6 1,964,641 - AMB_RS09230 0.37 -0.1 1,964,646 + AMB_RS09230 0.38 -2.1 1,964,661 + AMB_RS09230 0.40 -1.1 1,964,661 + AMB_RS09230 0.40 -0.5 1,964,661 + AMB_RS09230 0.40 -1.0 1,964,661 + AMB_RS09230 0.40 +0.5 1,964,661 + AMB_RS09230 0.40 -0.4 1,964,661 + AMB_RS09230 0.40 -0.2 1,964,662 - AMB_RS09230 0.40 +0.9 1,964,662 - AMB_RS09230 0.40 +0.8 1,964,662 - AMB_RS09230 0.40 -0.1 1,964,664 + AMB_RS09230 0.40 +0.5 1,964,664 + AMB_RS09230 0.40 -1.9 1,964,664 + AMB_RS09230 0.40 -1.9 1,964,665 - AMB_RS09230 0.41 -0.3 1,965,007 - AMB_RS09230 0.89 -1.3 1,965,123 - +1.0 1,965,135 - -0.1 1,965,147 + -1.9 1,965,182 + AMB_RS09235 0.11 -1.7 1,965,183 - AMB_RS09235 0.11 -2.0 1,965,188 + AMB_RS09235 0.12 +0.1 1,965,188 + AMB_RS09235 0.12 -0.3 1,965,188 + AMB_RS09235 0.12 -3.4 1,965,189 - AMB_RS09235 0.12 -1.1 1,965,267 + AMB_RS09235 0.21 -1.1 1,965,268 - AMB_RS09235 0.21 -1.1 1,965,268 - AMB_RS09235 0.21 -2.8 1,965,274 + AMB_RS09235 0.22 +0.6 1,965,275 - AMB_RS09235 0.22 -1.1 1,965,275 - AMB_RS09235 0.22 -0.1 1,965,275 - AMB_RS09235 0.22 -0.1 1,965,285 + AMB_RS09235 0.23 -0.2
Or see this region's nucleotide sequence