Experiment: 30_an_nonmag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS07490 and AMB_RS07495 overlap by 1 nucleotides AMB_RS07495 and AMB_RS07500 are separated by 156 nucleotides AMB_RS07500 and AMB_RS07505 are separated by 138 nucleotides
AMB_RS07490: AMB_RS07490 - aldehyde oxidase, at 1,620,644 to 1,623,385
_RS07490
AMB_RS07495: AMB_RS07495 - xanthine dehydrogenase, at 1,623,385 to 1,624,227
_RS07495
AMB_RS07500: AMB_RS07500 - MarR family transcriptional regulator, at 1,624,384 to 1,624,860
_RS07500
AMB_RS07505: AMB_RS07505 - adenine deaminase, at 1,624,999 to 1,626,201
_RS07505
Position (kb) 1623
1624
1625 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 1622.835 kb on + strand, within AMB_RS07490 at 1622.835 kb on + strand, within AMB_RS07490 at 1622.836 kb on - strand, within AMB_RS07490 at 1622.836 kb on - strand, within AMB_RS07490 at 1622.978 kb on - strand, within AMB_RS07490 at 1623.079 kb on + strand, within AMB_RS07490 at 1623.080 kb on - strand, within AMB_RS07490 at 1623.166 kb on + strand at 1624.021 kb on - strand, within AMB_RS07495 at 1624.214 kb on + strand at 1624.991 kb on + strand at 1624.993 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_nonmag_1 remove 1,622,835 + AMB_RS07490 0.80 +0.2 1,622,835 + AMB_RS07490 0.80 -2.0 1,622,836 - AMB_RS07490 0.80 -0.4 1,622,836 - AMB_RS07490 0.80 -1.0 1,622,978 - AMB_RS07490 0.85 -1.1 1,623,079 + AMB_RS07490 0.89 +0.3 1,623,080 - AMB_RS07490 0.89 -1.6 1,623,166 + +1.4 1,624,021 - AMB_RS07495 0.75 +0.8 1,624,214 + -5.0 1,624,991 + -1.6 1,624,993 + -0.2
Or see this region's nucleotide sequence