Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06330

Experiment: 30_an_nonmag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06320 and AMB_RS06325 are separated by 0 nucleotidesAMB_RS06325 and AMB_RS06330 are separated by 13 nucleotidesAMB_RS06330 and AMB_RS06335 overlap by 4 nucleotides AMB_RS06320: AMB_RS06320 - phenylacetate--CoA ligase, at 1,327,061 to 1,328,359 _RS06320 AMB_RS06325: AMB_RS06325 - metal-binding protein, at 1,328,360 to 1,328,782 _RS06325 AMB_RS06330: AMB_RS06330 - cytochrome c, at 1,328,796 to 1,329,530 _RS06330 AMB_RS06335: AMB_RS06335 - CusA/CzcA family heavy metal efflux RND transporter, at 1,329,527 to 1,332,628 _RS06335 Position (kb) 1328 1329 1330Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1328.076 kb on - strand, within AMB_RS06320at 1328.129 kb on + strand, within AMB_RS06320at 1328.129 kb on + strand, within AMB_RS06320at 1328.129 kb on + strand, within AMB_RS06320at 1328.130 kb on - strand, within AMB_RS06320at 1328.358 kb on - strandat 1328.542 kb on - strand, within AMB_RS06325at 1328.542 kb on - strand, within AMB_RS06325at 1328.592 kb on + strand, within AMB_RS06325at 1328.592 kb on + strand, within AMB_RS06325at 1328.644 kb on - strand, within AMB_RS06325at 1328.659 kb on + strand, within AMB_RS06325at 1328.659 kb on + strand, within AMB_RS06325at 1328.659 kb on + strand, within AMB_RS06325at 1328.659 kb on + strand, within AMB_RS06325at 1328.660 kb on - strand, within AMB_RS06325at 1328.660 kb on - strand, within AMB_RS06325at 1328.660 kb on - strand, within AMB_RS06325at 1328.660 kb on - strand, within AMB_RS06325at 1328.881 kb on + strand, within AMB_RS06330at 1328.881 kb on + strand, within AMB_RS06330at 1328.881 kb on + strand, within AMB_RS06330at 1328.881 kb on + strand, within AMB_RS06330at 1328.882 kb on - strand, within AMB_RS06330at 1328.882 kb on - strand, within AMB_RS06330at 1328.882 kb on - strand, within AMB_RS06330at 1328.882 kb on - strand, within AMB_RS06330at 1328.882 kb on - strand, within AMB_RS06330at 1328.951 kb on + strand, within AMB_RS06330at 1328.951 kb on + strand, within AMB_RS06330at 1328.951 kb on + strand, within AMB_RS06330at 1328.951 kb on + strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1329.019 kb on + strand, within AMB_RS06330at 1329.019 kb on + strand, within AMB_RS06330at 1329.019 kb on + strand, within AMB_RS06330at 1329.020 kb on - strand, within AMB_RS06330at 1329.020 kb on - strand, within AMB_RS06330at 1329.020 kb on - strand, within AMB_RS06330at 1329.020 kb on - strand, within AMB_RS06330at 1329.820 kb on - strandat 1329.820 kb on - strandat 1330.089 kb on + strand, within AMB_RS06335at 1330.089 kb on + strand, within AMB_RS06335at 1330.090 kb on - strand, within AMB_RS06335at 1330.449 kb on + strand, within AMB_RS06335at 1330.450 kb on - strand, within AMB_RS06335at 1330.450 kb on - strand, within AMB_RS06335at 1330.450 kb on - strand, within AMB_RS06335at 1330.450 kb on - strand, within AMB_RS06335at 1330.484 kb on + strand, within AMB_RS06335at 1330.484 kb on + strand, within AMB_RS06335at 1330.484 kb on + strand, within AMB_RS06335at 1330.485 kb on - strand, within AMB_RS06335at 1330.485 kb on - strand, within AMB_RS06335at 1330.485 kb on - strand, within AMB_RS06335at 1330.485 kb on - strand, within AMB_RS06335at 1330.485 kb on - strand, within AMB_RS06335

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_nonmag_1
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1,328,076 - AMB_RS06320 0.78 -0.8
1,328,129 + AMB_RS06320 0.82 -0.5
1,328,129 + AMB_RS06320 0.82 -0.5
1,328,129 + AMB_RS06320 0.82 -1.0
1,328,130 - AMB_RS06320 0.82 -3.2
1,328,358 - -1.5
1,328,542 - AMB_RS06325 0.43 -1.2
1,328,542 - AMB_RS06325 0.43 -1.0
1,328,592 + AMB_RS06325 0.55 -0.0
1,328,592 + AMB_RS06325 0.55 -0.5
1,328,644 - AMB_RS06325 0.67 +0.1
1,328,659 + AMB_RS06325 0.71 -1.3
1,328,659 + AMB_RS06325 0.71 -1.9
1,328,659 + AMB_RS06325 0.71 -0.4
1,328,659 + AMB_RS06325 0.71 -0.3
1,328,660 - AMB_RS06325 0.71 -0.0
1,328,660 - AMB_RS06325 0.71 -3.3
1,328,660 - AMB_RS06325 0.71 -3.3
1,328,660 - AMB_RS06325 0.71 -0.5
1,328,881 + AMB_RS06330 0.12 -0.8
1,328,881 + AMB_RS06330 0.12 -2.4
1,328,881 + AMB_RS06330 0.12 -0.3
1,328,881 + AMB_RS06330 0.12 +1.4
1,328,882 - AMB_RS06330 0.12 +0.3
1,328,882 - AMB_RS06330 0.12 -0.0
1,328,882 - AMB_RS06330 0.12 -1.9
1,328,882 - AMB_RS06330 0.12 -1.0
1,328,882 - AMB_RS06330 0.12 -0.6
1,328,951 + AMB_RS06330 0.21 -1.3
1,328,951 + AMB_RS06330 0.21 -2.5
1,328,951 + AMB_RS06330 0.21 -2.0
1,328,951 + AMB_RS06330 0.21 -2.8
1,328,952 - AMB_RS06330 0.21 +1.5
1,328,952 - AMB_RS06330 0.21 -0.0
1,328,952 - AMB_RS06330 0.21 +0.7
1,328,952 - AMB_RS06330 0.21 -1.5
1,328,952 - AMB_RS06330 0.21 -0.8
1,328,952 - AMB_RS06330 0.21 -1.3
1,328,952 - AMB_RS06330 0.21 +0.1
1,328,952 - AMB_RS06330 0.21 -0.0
1,329,019 + AMB_RS06330 0.30 -0.0
1,329,019 + AMB_RS06330 0.30 +0.5
1,329,019 + AMB_RS06330 0.30 +0.5
1,329,020 - AMB_RS06330 0.30 -2.0
1,329,020 - AMB_RS06330 0.30 -1.0
1,329,020 - AMB_RS06330 0.30 -1.3
1,329,020 - AMB_RS06330 0.30 -1.5
1,329,820 - -1.3
1,329,820 - -1.8
1,330,089 + AMB_RS06335 0.18 -1.3
1,330,089 + AMB_RS06335 0.18 +0.2
1,330,090 - AMB_RS06335 0.18 -0.8
1,330,449 + AMB_RS06335 0.30 -2.3
1,330,450 - AMB_RS06335 0.30 -1.5
1,330,450 - AMB_RS06335 0.30 -0.6
1,330,450 - AMB_RS06335 0.30 +2.1
1,330,450 - AMB_RS06335 0.30 +0.4
1,330,484 + AMB_RS06335 0.31 -1.8
1,330,484 + AMB_RS06335 0.31 +0.5
1,330,484 + AMB_RS06335 0.31 +0.5
1,330,485 - AMB_RS06335 0.31 -0.8
1,330,485 - AMB_RS06335 0.31 -2.5
1,330,485 - AMB_RS06335 0.31 +0.3
1,330,485 - AMB_RS06335 0.31 -0.7
1,330,485 - AMB_RS06335 0.31 -3.5

Or see this region's nucleotide sequence